Contig 001376:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF025O21Sequence266006256 (2)762001376 (2)ref|XP_010318560.1|98.2PREDICTED: uncharacterized protein LOC101247414 [Solanum lycopersicum]
JMSF040N13Sequence652024251ref|XP_006343110.1|176PREDICTED: uncharacterized protein LOC102601682 [Solanum tuberosum]815001376 (2)ref|XP_011072294.1|4e-48PREDICTED: protein CASC3-like [Sesamum indicum]

Alignment

This contig is upended


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rJMSF040N13+                                           TTTGCCAGTCATGCAATTTGGTAACCA
                      ____________________________________________________________
consensus                                              TTTGCCAGTCATGCAATTTGGTAACCA
 
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rJMSF040N13+          GCACCCTGGTGGCATTGGAGTTCCTGCTGTTGGCATGGCATTTCCAGGTTATGTGGCTCA
                      ____________________________________________________________
consensus             GCACCCTGGTGGCATTGGAGTTCCTGCTGTTGGCATGGCATTTCCAGGTTATGTGGCTCA
 
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rJMSF040N13+          GCCGCAACTTGGATTAGGGAGTTCCGAGATGACTTGGTTGCCTGTTTTAGCTGGTGCTGC
                      ____________________________________________________________
consensus             GCCGCAACTTGGATTAGGGAGTTCCGAGATGACTTGGTTGCCTGTTTTAGCTGGTGCTGC
 
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rJMSF040N13+          TGGAGCATTGGGGGCTACGTATTGCTCACCCTATATTGCTGTTGATGGTGCCTATCATGG
rJMSF025O21+                            GTATTGCTCACCCTATATTGCTGTNGATGGTGCCTATCATGG
                      ____________________________________________________________
consensus             TGGAGCATTGGGGGCTACGTATTGCTCACCCTATATTGCTGTTGATGGTGCCTATCATGG
 
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rJMSF040N13+          TCGTCCATCTGGGCAGATTTCTACCCTCACCGCTGCTTCAAGCAAAGAAAATAATAGCAG
rJMSF025O21+          TCGTCCATCTGGGCAGATTTCTACCCTCACCGCTGCTTCAAGCAAAGAAAATAATAGCAG
                      ____________________________________________________________
consensus             TCGTCCATCTGGGCAGATTTCTACCCTCACCGCTGCTTCAAGCAAAGAAAATAATAGCAG
 
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rJMSF040N13+          CAAACCTAATAATGAAGGGAAGCCTTCGCAAAAGCCTGAACTTGGAAATGATGACTTTGG
rJMSF025O21+          CAAACCTAATAATGAAGGGAAGCCTTCGCAAAAGCCTGAACTTGGAAATGATGACTTTGG
                      ____________________________________________________________
consensus             CAAACCTAATAATGAAGGGAAGCCTTCGCAAAAGCCTGAACTTGGAAATGATGACTTTGG
 
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rJMSF040N13+          GCAGCGACAGAAGAATCCTCGCAGATATACAGAGATGAAGTTTGACCAATGAAGTAGTGG
rJMSF025O21+          GCAGCGACAGAAGAATCCTCGCAGATATACAGAGATGAAGTTTGACCAATGAAGTAGTGG
                      ____________________________________________________________
consensus             GCAGCGACAGAAGAATCCTCGCAGATATACAGAGATGAAGTTTGACCAATGAAGTAGTGG
 
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rJMSF040N13+          TGTATGTTGAACCTGTTTGAATAAGCCGGTTAATATCAAATTATCCAATTAAAATCTTCC
rJMSF025O21+          TGTATGTTGAACCTGTTTGAATAAGCCGGTTAATATCAAATTATCCAATTAAAATCTTCC
                      ____________________________________________________________
consensus             TGTATGTTGAACCTGTTTGAATAAGCCGGTTAATATCAAATTATCCAATTAAAATCTTCC
 
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rJMSF040N13+          ATCTTTAGTTGGGTGTTGCATTCTGTGTGGTACTTTCAGTGCTGCAGGCCTTTTCCCGGG
rJMSF025O21+          ATCTTTAGTTGGGTGTTGCATTCTGTGTGGTACTTTCAGTGCTGCAGGCCTTTTCCCGGG
                      ____________________________________________________________
consensus             ATCTTTAGTTGGGTGTTGCATTCTGTGTGGTACTTTCAGTGCTGCAGGCCTTTTCCCGGG
 
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rJMSF040N13+          CCCTTCTCCATTTGTAGATCTGGAGAACCTGGGGCTCTCATGTATTCTGCCTTACCTTAG
rJMSF025O21+          CCCTTCTCCATTTGTAGATCTGGAGAACCTGGGGCTCTCATGTATTCTGCCTTACCTTAG
                      ____________________________________________________________
consensus             CCCTTCTCCATTTGTAGATCTGGAGAACCTGGGGCTCTCATGTATTCTGCCTTACCTTAG
 
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rJMSF040N13+          GTTTACATGACAAAACGCCTGCTCATGCTGCTTCACTTCAGGAGCTACACTGCAGCTTGA
rJMSF025O21+          GTTTACATGACAAAACGCCTGCTCATGCTGCTTCACTTCAGGAGCTACACTGCAGCTTGA
                      ____________________________________________________________
consensus             GTTTACATGACAAAACGCCTGCTCATGCTGCTTCACTTCAGGAGCTACACTGCAGCTTGA
 
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rJMSF040N13+          CGGGTGGCAGTTCTTTACTCAATATGT-GTTCTTGTGGCTTGCTTTTGTTTCAATGAGGC
rJMSF025O21+          CGGGTGGCAGTTCTTTACTCAATATGTGGTTCTTGTGGCTTGCTTTTGTTTCAATGAGGC
                      ____________________________________________________________
consensus             CGGGTGGCAGTTCTTTACTCAATATGTGGTTCTTGTGGCTTGCTTTTGTTTCAATGAGGC
 
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rJMSF040N13+          TTGTGAGAATAGTTACTGGACTTCTAGAAGATGATAAATAATGGCAAAGAACAAGAGGCA
rJMSF025O21+          TTGTGAGAATAGTTACTGGACTTCTAGAAGATGATAAATAATGGCAAAGAACAAGAGGCA
                      ____________________________________________________________
consensus             TTGTGAGAATAGTTACTGGACTTCTAGAAGATGATAAATAATGGCAAAGAACAAGAGGCA
 
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rJMSF040N13+          TTATGTAGCAGAAGTATGTTATGCTAAGTTCATATATTTCCAGTATATGGTTTTGTTTAC
rJMSF025O21+          TTATGTAGCAGAAGTATGTTATGCTAAGTTCATATATTTCCAGTATATGGTTTTGTTTAC
                      ____________________________________________________________
consensus             TTATGTAGCAGAAGTATGTTATGCTAAGTTCATATATTTCCAGTATATGGTTTTGTTTAC
 
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rJMSF040N13+          AAATCTGGT                                                   
rJMSF025O21+          AAATCTGGTTTGCGTCAAAATTCCGTGGATAATGTTACCCTTTTGAGGAGGATGCTGCCT
                      ____________________________________________________________
consensus             AAATCTGGTTTGCGTCAAAATTCCGTGGATAATGTTACCCTTTTGAGGAGGATGCTGCCT
 
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rJMSF025O21+          TGTGTATTTTACATTTACTTGATGGAAACACTGCTTTTGGTCAGATTTGTATTTTGCATT
                      ____________________________________________________________
consensus             TGTGTATTTTACATTTACTTGATGGAAACACTGCTTTTGGTCAGATTTGTATTTTGCATT