Contig 001372:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF025E20+                                                                  TCAA
                      ____________________________________________________________
consensus                                                                     TCAA
 
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rJMSF025M21+                                                             TGGTATTTG
rJMSF025E20+          CGAGTGCTGGTGGGACAGCATTGTTCTTGACATATTAATCTGCAATTGGTTTGGTATTTG
                      ____________________________________________________________
consensus             CGAGTGCTGGTGGGACAGCATTGTTCTTGACATATTAATCTGCAATTGGTTTGGTATTTG
 
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rJMSF025M21+          GGCAGGGATGCGTACTGTTCGTTATTTTGATGGTAGAACATATGAGTGGGTTGGTATCAG
rJMSF025E20+          GGCAGGGATGCGTACTGTTCGTTATTTTGATGGTAGAACATATGAGTGGGTTGGTATCAG
                      ____________________________________________________________
consensus             GGCAGGGATGCGTACTGTTCGTTATTTTGATGGTAGAACATATGAGTGGGTTGGTATCAG
 
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rJMSF025M21+          CCGACAACCAAATATTATTGGTAAAGTCAAGCGAACACTTGGTCAGTTTACTCCAGCACA
rJMSF025E20+          CCGACAACCAAATATTATTGGTAAAGTCAAGCGAACACTTGGTCAGTTTACTCCAGCACA
                      ____________________________________________________________
consensus             CCGACAACCAAATATTATTGGTAAAGTCAAGCGAACACTTGGTCAGTTTACTCCAGCACA
 
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rJMSF025M21+          TTGGGATAAAGATGAATGGCATCCACTTCTTGGTCCTTGGCGTTTTCTTCAAGTTCTGAG
rJMSF025E20+          TTGGGATAAAGATGAATGGCATCCACTTCTTGGTCCTTGGCGTTTTCTTCAAGTTCTGAG
                      ____________________________________________________________
consensus             TTGGGATAAAGATGAATGGCATCCACTTCTTGGTCCTTGGCGTTTTCTTCAAGTTCTGAG
 
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rJMSF025M21+          CCTCTGTGTTGTGTTCTTGACGGTGGAATTGAACACGTTCTTCCTCAAGTTTTGTCTTTG
rJMSF025E20+          CCTCTGTGTTGTGTTCTTGACGGTGGAATTGAACACGTTCTTCCTCAAGTTTTGTCTTTG
                      ____________________________________________________________
consensus             CCTCTGTGTTGTGTTCTTGACGGTGGAATTGAACACGTTCTTCCTCAAGTTTTGTCTTTG
 
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rJMSF025M21+          GGTTCCTCCCCGAAACCCTTTGATAATATATAGATTAGTGTTATGGTGGCTGATTGCAAT
rJMSF025E20+          GGTTCCTCCCCGAAACCCTTTGATAATATATAGATTAGTGTTATGGTGGCTGATTGCAAT
                      ____________________________________________________________
consensus             GGTTCCTCCCCGAAACCCTTTGATAATATATAGATTAGTGTTATGGTGGCTGATTGCAAT
 
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rJMSF025M21+          ACCAACCATCCGGGAGTACAATTCTTACCTACAAGACAGAAAACCGGATAAAAAGGTGGG
rJMSF025E20+          ACCAACCATCCGGGAGTACAATTCTTACCTACAAGACAGAAAACCGGATAAAAAGGTGGG
                      ____________________________________________________________
consensus             ACCAACCATCCGGGAGTACAATTCTTACCTACAAGACAGAAAACCGGATAAAAAGGTGGG
 
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rJMSF025M21+          AACATTTTGTTGGCTCTCCCTTGCTATCTGCATCGTTGAACTTCTAATATGCATCAAGTT
rJMSF025E20+          AACATTTTGTTGGCTCTCCCTTGCTATCTGCATCGTTGAACTTCTAATATGCATCAAGTT
                      ____________________________________________________________
consensus             AACATTTTGTTGGCTCTCCCTTGCTATCTGCATCGTTGAACTTCTAATATGCATCAAGTT
 
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rJMSF025M21+          TGGGCATGGATTGTTTCATGAACCCATGCCGAAATGGTTGGTTATTCTTTGGACATCCAT
rJMSF025E20+          TGGGCATGGATTGTTTCATGAACCCATGCCGAAATGGTTGGTTATTCTTTGGACATCCAT
                      ____________________________________________________________
consensus             TGGGCATGGATTGTTTCATGAACCCATGCCGAAATGGTTGGTTATTCTTTGGACATCCAT
 
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rJMSF025M21+          TGGGGTTGGGCATGTGATATTCTTGTCGGCGTGGTCATGGCAACTTATTAGGAGAAAGCA
rJMSF025E20+          TGGGGTTGGGCATGTGATATTCTTGTCGGCGTGGTCATGGCAACTTATTAGGAGAAAGCA
                      ____________________________________________________________
consensus             TGGGGTTGGGCATGTGATATTCTTGTCGGCGTGGTCATGGCAACTTATTAGGAGAAAGCA
 
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rJMSF025M21+          GCAATGAACCGTAGTGTGGGTGCCTAATTCATTGATTTCTTTCTGATGTTTTCCATAACT
rJMSF025E20+          GCAATGAACCGTAGTGTGGGTGCCTAATTCATTGATTTCTTTCTGATGTTTTCCATAACT
                      ____________________________________________________________
consensus             GCAATGAACCGTAGTGTGGGTGCCTAATTCATTGATTTCTTTCTGATGTTTTCCATAACT
 
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rJMSF025M21+          ATATGTTGTAAATACCCCGTATGTTGGTAATTGTATATGCTTTATTCTATTAGGTTAGAG
rJMSF025E20+          ATATGTTGTAAATACCCCGTATGTTGGTAATTGTATATGCTTTATTCTATTAGGTTAGAG
                      ____________________________________________________________
consensus             ATATGTTGTAAATACCCCGTATGTTGGTAATTGTATATGCTTTATTCTATTAGGTTAGAG
 
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rJMSF025M21+          ATCACAGATGAAGCATGTAGAGAACCTCAGTTTTTACTTCAATTCATAGATAAAAGTT  
rJMSF025E20+          ATCACAGATGAAGCATGTAGAGAACCTCAGTTTTTACTTCAATTCATAGATAAAAGTTGG
                      ____________________________________________________________
consensus             ATCACAGATGAAGCATGTAGAGAACCTCAGTTTTTACTTCAATTCATAGATAAAAGTTGG