Contig 001371:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028A14Sequence527010858 (9)ref|XP_006359369.1|2e-77PREDICTED: dynamin-related protein 3A-like [Solanum tuberosum]683001371 (7)ref|XP_009768280.1|8e-71PREDICTED: dynamin-related protein 3A-like [Nicotiana sylvestris]
JMFN009C01Sequence609001371 (7)ref|XP_009768280.1|1e-105PREDICTED: dynamin-related protein 3A-like [Nicotiana sylvestris]
JMFS101C02Sequence619001371 (7)ref|XP_009768280.1|1e-39PREDICTED: dynamin-related protein 3A-like [Nicotiana sylvestris]
JMSF025E06Sequence689010858 (9)ref|XP_006359369.1|8e-110PREDICTED: dynamin-related protein 3A-like [Solanum tuberosum]787001371 (7)ref|XP_009768280.1|2e-54PREDICTED: dynamin-related protein 3A-like [Nicotiana sylvestris]
JMSF027B17Sequence679010858 (9)ref|XP_006359369.1|8e-110PREDICTED: dynamin-related protein 3A-like [Solanum tuberosum]772001371 (7)ref|XP_009768280.1|2e-70PREDICTED: dynamin-related protein 3A-like [Nicotiana sylvestris]
JMSF029G13Sequence664010858 (9)ref|XP_006359369.1|3e-91PREDICTED: dynamin-related protein 3A-like [Solanum tuberosum]756001371 (7)ref|XP_009768280.1|7e-86PREDICTED: dynamin-related protein 3A-like [Nicotiana sylvestris]
JMSF042A21Sequence486010858 (9)emb|CAN69848.1|2e-33hypothetical protein VITISV_007522 [Vitis vinifera]763001371 (7)ref|XP_009768280.1|1e-82PREDICTED: dynamin-related protein 3A-like [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN009C01- ACATTCTATTTCTATGATTCATTTGAGAGAGCCACCAAGTGTC
                      ____________________________________________________________
consensus ACATTCTATTTCTATGATTCATTTGAGAGAGCCACCAAGTGTC
 
. : . : . : . : . : . :
JMFN009C01- TTGAGGCCCACAGAAACCCACACAGATCAGGAGACCATCGAAATAACTGTCAC-AAAACT
rJMSF042A21+ CACACAGATCAGGAGACCATNGAAATAACTGTCACNAAAACT
rJMSF029G13+ AAAACT
                      ____________________________________________________________
consensus TTGAGGCCCACAGAAACCCACACAGATCAGGAGACCATCGAAATAACTGTCACNAAAACT
 
. : . : . : . : . : . :
JMFN009C01- GTTGCTGAGATCATATTATGACATTGTTAGAAAGAATATTGAAGATTCTGTACCTAAAGC
rJMSF042A21+ GTTGCTGAGATCATATTATGACATTGTTAGAAAGAATATTGAAGATTCTGTACCTAAAGC
rJMSF029G13+ GTTGCTGAGATCATATTATGACATTGTTAGAAAGAATATTGAAGATTCTGTACCTAAAGC
rJMFF028A14+ TAAAGC
rJMSF027B17+ CTAAAGC
rJMSF025E06+ CCTAAAGC
                      ____________________________________________________________
consensus GTTGCTGAGATCATATTATGACATTGTTAGAAAGAATATTGAAGATTCTGTACCTAAAGC
 
. : . : . : . : . : . :
JMFN009C01- AATCATGCACTTCCTGGTAAATCACACCAAACGAGAACTGCACAACGTATTTATCAAAAA
rJMSF042A21+ AATCATGCACTTCCTGGTAAATCACACCAAACGAGAACTGCACAACGTATTTATCAAAAA
rJMSF029G13+ AATCATGCACTTCCTGGTAAATCACACCAAACGAGAACTGCACAACGTATTTATCAAAAA
rJMFF028A14+ AATCATGCACTTCCTGGTAAATCACACCAAACGAGAACTGCACAACGTATTTATCAAAAA
rJMSF027B17+ AATCATGCACTTCCTGGTAAATCACACCAAACGAGAACTGCACAACGTATTTATCAAAAA
rJMSF025E06+ CATCATGCACTTCCTGGTAAATCACACCAAACGAGAACTGCACAACGTATTTATCAAAAA
                      ____________________________________________________________
consensus AATCATGCACTTCCTGGTAAATCACACCAAACGAGAACTGCACAACGTATTTATCAAAAA
 
. : . : . : . : . : . :
JMFN009C01- GCTTTACAGAGATAACCTCTTTGAAGAGATGCTGCAAGAACCTGATGAGGTAGCTACAAA
rJMSF042A21+ GCTTTACAGAGATAACCTCTTTGAAGAGATGCTGCAAGAACCTGATGAGGTAGCTACAAA
rJMSF029G13+ GCTTTACAGAGATAACCTCTTTGAAGAGATGCTGCAAGAACCTGATGAGGTAGCTACAAA
rJMFF028A14+ GCTTTACAGAGATAACCTCTTTGAAGAGATGCTGCAAGAACCTGATGAGGTAGCTACAAA
rJMSF027B17+ GCTTTACAGAGATAACCTCTTTGAAGAGATGCTGCAAGAACCTGATGAGGTAGCTACAAA
rJMSF025E06+ GC-TTACAGAGATAACCTCTTTGAAGAGATGCTGCAAGAACCTGATGAGGTAGCTACAAA
                      ____________________________________________________________
consensus GCTTTACAGAGATAACCTCTTTGAAGAGATGCTGCAAGAACCTGATGAGGTAGCTACAAA
 
. : . : . : . : . : . :
JMFN009C01- GAGAAAGCGCACTCGTGATACACTCCGTGTACTTCAGCAAGCATTCAAGACGTTGGATGA
rJMSF042A21+ GAGAAAGCGCACTCGTGATACACTCCGTGTACTTCAGCAAGCATTCAAGACGTTGGATGA
rJMSF029G13+ GAGAAAGCGCACTCGTGATACACTCCGTGTACTTCAGCAAGCATTCAAGACGTTGGATGA
rJMFF028A14+ GAGAAAGCGCACTCGTGATACACTCCGTGTACTTCAGCAAGCATTCAAGACGTTGGATGA
rJMSF027B17+ GAGAAAGCGCACTCGTGATACACTCCGTGTACTTCAGCAAGCATTCAAGACGTTGGATGA
JMFS101C02- AGCGCACTCGTGATACACTCCGTGTACTTCAGCAAGCATTCAAGACGTTGGATGA
rJMSF025E06+ GAGAAAGCGCACTCGTGATACACTCCGTGTACTTCAGCAAGCATTCAAGACGTTGGATGA
                      ____________________________________________________________
consensus GAGAAAGCGCACTCGTGATACACTCCGTGTACTTCAGCAAGCATTCAAGACGTTGGATGA
 
. : . : . : . : . : . :
JMFN009C01- ATTGCCACTTGAAGCTGAGTCAGTTGAAAGAGGCTATAGTTTGAGTCCTGATCCAACAGG
rJMSF042A21+ ATTGCCACTTGAAGCTGAGTCAGTTGAAAGAGGCTATAGTTTGAGTCCTGATCCAACAGG
rJMSF029G13+ ATTGCCACTTGAAGCTGAGTCAGTTGAAAGAGGCTATAGTTTGAGTCCTGATCCAACAGG
rJMFF028A14+ ATTGCCACTTGAAGCTGAGTCAGTTGAAAGAGGCTATAGTTTGAGTCCTGATCCAACAGG
rJMSF027B17+ ATTGCCACTTGAAGCTGAGTCAGTTGAAAGAGGCTATAGTTTGAGTCCTGATCCAACAGG
JMFS101C02- ATTGCCACTTGAAGCTGAGTCAGTTGAAAGAGGCTATAGTTTGAGTCCTGATCCAACAGG
rJMSF025E06+ ATTGCCACTTGAAGCTGAGTCAGTTGAAAGAGGCTATAGTTTGAGTCCTGATCCAACAGG
                      ____________________________________________________________
consensus ATTGCCACTTGAAGCTGAGTCAGTTGAAAGAGGCTATAGTTTGAGTCCTGATCCAACAGG
 
. : . : . : . : . : . :
JMFN009C01- ATTGCCAAAGATCCATGGGCTCCCCACATCCTCTATGTATACTACTAGTAGTTCAGTGGA
rJMSF042A21+ ATTGCCAAAGATCCATGGGCTCCCCACATCCTCTATGTATACTACTAGTAGTTCAGTGGA
rJMSF029G13+ ATTGCCAAAGATCCATGGGCTCCCCACATCCTCTATGTATACTACTAGTAGTTCAGTGGA
rJMFF028A14+ ATTGCCAAAGATCCATGGGCTCCCCACATCCTCTATGTATACTACTAGTAGTTCAGTGGA
rJMSF027B17+ ATTGCCAAAGATCCATGGGCTCCCCACATCCTCTATGTATACTACTAGTAGTTCAGTGGA
JMFS101C02- ATTGCCAAAGATCCATGGGCTCCCCACATCCTCTATGTATACTACTAGTAGTTCAGTGGA
rJMSF025E06+ ATTGCCAAAGATCCATGGGCTCCCCACATCCTCTATGTATACTACTAGTAGTTCAGTGGA
                      ____________________________________________________________
consensus ATTGCCAAAGATCCATGGGCTCCCCACATCCTCTATGTATACTACTAGTAGTTCAGTGGA
 
. : . : . : . : . : . :
JMFN009C01- TTCATACACTGCTTCCCCCAAGAACCCAAGATCACGCAAATCTTCACATTCAGGGGAGCT
rJMSF042A21+ TTCATACACTGCTTCCCCCAAGAACCCAAGATCACGCAAATCTTCACATTCAGGGGAGCT
rJMSF029G13+ TTCATACACTGCTTCCCCCAAGAACCCAAGATCACGCAAATCTTCACATTCAGGGGAGCT
rJMFF028A14+ TTCATACACTGCTTCCCCCAAGAACCCAAGATCACGCAAATCTTCACATTCAGGGGAGCT
rJMSF027B17+ TTCATACACTGCTTCCCCCAAGAACCCAAGATCACGCAAATCTTCACATTCAGGGGAGCT
JMFS101C02- TTCATACACTGCTTCCCCCAAGAACCCAAGATCACGCAAATCTTCACATTCAGGGGAGCT
rJMSF025E06+ TTCATACACTGCTTCCCCCAAGAACCCAAGATCACGCAAATCTTCACATTCAGGGGAGCT
                      ____________________________________________________________
consensus TTCATACACTGCTTCCCCCAAGAACCCAAGATCACGCAAATCTTCACATTCAGGGGAGCT
 
. : . : . : . : . : . :
JMFN009C01- TCAGTCACCCATGTATTATGTTGGTGGAGATTCTAATGGCAATGGACGCAATTCTCTTCT
rJMSF042A21+ TCAGTCACCCATGTATTATGTTGGTGGAGATTCTAATGGCAATGGACGCAATTCTCTTCT
rJMSF029G13+ TCAGTCACCCATGTATTATGTTGGTGGAGATTCTAATGGCAATGGACGCAATTCTCTTCT
rJMFF028A14+ TCAGTCACCCATGTATTATGTTGGTGGAGATTCTAATGGCAATGGACGCAATTCTCTTCT
rJMSF027B17+ TCAGTCACCCATGTATTATGTTGGTGGAGATTCTAATGGCAATGGACGCAATTCTCTTCT
JMFS101C02- TCAGTCACCCATGTATTATGTTGGTGGAGATTCTAATGGCAATGGACGCAATTCTCTTCT
rJMSF025E06+ TCAGTCACCCATGTATTATGTTGGTGGAGATTCTAATGGCAATGGACGCAATTCTCTTCT
                      ____________________________________________________________
consensus TCAGTCACCCATGTATTATGTTGGTGGAGATTCTAATGGCAATGGACGCAATTCTCTTCT
 
. : . : . : . : . : . :
JMFN009C01- GGGACTTTACCCAACAATTGATGCATA
rJMSF042A21+ GGGACTTTACCCAACAATTGATGCATAAGAATGCAGAAACGAACAACATTGATAATTTGG
rJMSF029G13+ GGGACTTTACCCAACAATTGATGCATAAGAATGCAGAAACGAACAACATTGATAATTTGG
rJMFF028A14+ GGGACTTTACCCAACAATTGATGCATAAGAATGCAGAAACGAACAACATTGATAATTTGG
rJMSF027B17+ GGGACTTTACCCAACAATTGATGCATAAGAATGCAGAAACGAACAACATTGATAATTTGG
JMFS101C02- GGGACTTTACCCAACAATTGATGCATAAGAATGCAGAAACGAACAACATTGATAATTTGG
rJMSF025E06+ GGGACTTTACCCAACAATTGATGCATAAGAATGCAGAAACGAACAACATTGATAATTTGG
                      ____________________________________________________________
consensus GGGACTTTACCCAACAATTGATGCATAAGAATGCAGAAACGAACAACATTGATAATTTGG
 
. : . : . : . : . : . :
rJMSF042A21+ ATTTATTTTATTTCCCTCTCCAACATTATTGCAGAGGCATGCAGGATCTAAAGCTCTGGA
rJMSF029G13+ ATTTATTTTATTTCCCTCTCCAACATTATTGCAGAGGCATGCAGGATCTAAAGCTCTGGA
rJMFF028A14+ ATTTATTTTATTTCCCTCTCCAACATTATTGCAGAGGCATGCAGGATCTAAAGCTCTGGA
rJMSF027B17+ ATTTATTTTATTTCCCTCTCCAACATTATTGCAGAGGCATGCAGGATCTAAAGCTCTGGA
JMFS101C02- ATTTATTTTATTTCCCTCTCCAACATTATTGCAGAGGCATGCAGGATCTAAAGCTCTGGA
rJMSF025E06+ ATTTATTTTATTTCCCTCTCCAACATTATTGCAGAGGCATGCAGGATCTAAAGCTCTGGA
                      ____________________________________________________________
consensus ATTTATTTTATTTCCCTCTCCAACATTATTGCAGAGGCATGCAGGATCTAAAGCTCTGGA
 
. : . : . : . : . : . :
rJMSF042A21+ TCTGGTATGATAGGAGAGTTGCTATTCTTTTATGGAAAGATGATGCTTAGATGTATAATA
rJMSF029G13+ TCTGGTATGATAGGAGAGTTGCTATTCTTTTATGGAAAGATGATGCTTAGATGTATAATA
rJMFF028A14+ TCTGGTATGATAGGAGAGTTGCTATTCTTTTATGGAAAGATGATGCTTAGATGTATAATA
rJMSF027B17+ TCTGGTATGATAGGAGAGTTGCTATTCTTTTATGGAAAGATGATGCTTAGATGTATAATA
JMFS101C02- TCTGGTATGATAGGAGAGTTGCTATTCTTTTATGGAAAGATGATGCTTAGATGTATAATA
rJMSF025E06+ TCTGGTATGATAGGAGAGTTGCTATTCTTTTATGGAAAGATGATGCTTAGATGTATAATA
                      ____________________________________________________________
consensus TCTGGTATGATAGGAGAGTTGCTATTCTTTTATGGAAAGATGATGCTTAGATGTATAATA
 
. : . : . : . : . : . :
rJMSF042A21+ TTATGCCTACGGCCTACACATGTTAGATATTTTTTGGTCCCTATAGCACATCATATATGC
rJMSF029G13+ TTATGCCTACGGCCTACACATGTTAGATATTTTTTGGTCCCTATAGCACATCATATATGC
rJMFF028A14+ TTATGCCTACGGCCTACACATGTTAGATATTTTTTGGTCCCTATAGCACATCATATATGC
rJMSF027B17+ TTATGCCTACGGCCTACACATGTTAGATATTTTTTGGTCCCTATAGCACATCATATATGC
JMFS101C02- TTATGCCTACGGCCTACACATGTTAGATATTTTTTGGTCCCTATAGCACATCATATATGC
rJMSF025E06+ TTATGCCTACGGCCTACACATGTTAGATATTTTTTGGTCCCTATAGCACATCATATATGC
                      ____________________________________________________________
consensus TTATGCCTACGGCCTACACATGTTAGATATTTTTTGGTCCCTATAGCACATCATATATGC
 
. : . : . : . : . : . :
rJMSF042A21+ A
rJMSF029G13+ ATTAGTATAG
rJMFF028A14+ ATTAGTATAGGCTCT
rJMSF027B17+ ATTAGTATAGGCTCTGGAATGAATGAATAATTGGTAGCTGTGTGAACAGAAGCTGCAATC
JMFS101C02- ATTAGTATAGGCTCTGGAATGAATGAATAATTGGTAGCTGTGTGAACAGAAGCTGCAATC
rJMSF025E06+ ATTAGTATAGGCTCTGGAATGAATGAATAATTGGTAGCTGTGTGAACAGAAGCTGCAATC
                      ____________________________________________________________
consensus ATTAGTATAGGCTCTGGAATGAATGAATAATTGGTAGCTGTGTGAACAGAAGCTGCAATC
 
. : . : . : . : . : . :
rJMSF027B17+ AGTTTTGTTTTTATTTTTTGTTATGGGTTGTGGCCAAC
JMFS101C02- AGTT
rJMSF025E06+ AGTTTTGTTTTTATTTTTTGTTATGGGTTGTGGCCAACTGCTGCCTGGTATTTGAATGCT
                      ____________________________________________________________
consensus AGTTTTGTTTTTATTTTTTGTTATGGGTTGTGGCCAACTGCTGCCTGGTATTTGAATGCT