clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF028A14 | Sequence | 527 | 010858 (9) | ref|XP_006359369.1| | 2e-77 | PREDICTED: dynamin-related protein 3A-like [Solanum tuberosum] | 683 | 001371 (7) | ref|XP_009768280.1| | 8e-71 | PREDICTED: dynamin-related protein 3A-like [Nicotiana sylvestris] |
JMFN009C01 | Sequence | 609 | 001371 (7) | ref|XP_009768280.1| | 1e-105 | PREDICTED: dynamin-related protein 3A-like [Nicotiana sylvestris] | |||||
JMFS101C02 | Sequence | 619 | 001371 (7) | ref|XP_009768280.1| | 1e-39 | PREDICTED: dynamin-related protein 3A-like [Nicotiana sylvestris] | |||||
JMSF025E06 | Sequence | 689 | 010858 (9) | ref|XP_006359369.1| | 8e-110 | PREDICTED: dynamin-related protein 3A-like [Solanum tuberosum] | 787 | 001371 (7) | ref|XP_009768280.1| | 2e-54 | PREDICTED: dynamin-related protein 3A-like [Nicotiana sylvestris] |
JMSF027B17 | Sequence | 679 | 010858 (9) | ref|XP_006359369.1| | 8e-110 | PREDICTED: dynamin-related protein 3A-like [Solanum tuberosum] | 772 | 001371 (7) | ref|XP_009768280.1| | 2e-70 | PREDICTED: dynamin-related protein 3A-like [Nicotiana sylvestris] |
JMSF029G13 | Sequence | 664 | 010858 (9) | ref|XP_006359369.1| | 3e-91 | PREDICTED: dynamin-related protein 3A-like [Solanum tuberosum] | 756 | 001371 (7) | ref|XP_009768280.1| | 7e-86 | PREDICTED: dynamin-related protein 3A-like [Nicotiana sylvestris] |
JMSF042A21 | Sequence | 486 | 010858 (9) | emb|CAN69848.1| | 2e-33 | hypothetical protein VITISV_007522 [Vitis vinifera] | 763 | 001371 (7) | ref|XP_009768280.1| | 1e-82 | PREDICTED: dynamin-related protein 3A-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMFN009C01- ACATTCTATTTCTATGATTCATTTGAGAGAGCCACCAAGTGTC
____________________________________________________________
consensus ACATTCTATTTCTATGATTCATTTGAGAGAGCCACCAAGTGTC
. : . : . : . : . : . :
JMFN009C01- TTGAGGCCCACAGAAACCCACACAGATCAGGAGACCATCGAAATAACTGTCAC-AAAACT
rJMSF042A21+ CACACAGATCAGGAGACCATNGAAATAACTGTCACNAAAACT
rJMSF029G13+ AAAACT
____________________________________________________________
consensus TTGAGGCCCACAGAAACCCACACAGATCAGGAGACCATCGAAATAACTGTCACNAAAACT
. : . : . : . : . : . :
JMFN009C01- GTTGCTGAGATCATATTATGACATTGTTAGAAAGAATATTGAAGATTCTGTACCTAAAGC
rJMSF042A21+ GTTGCTGAGATCATATTATGACATTGTTAGAAAGAATATTGAAGATTCTGTACCTAAAGC
rJMSF029G13+ GTTGCTGAGATCATATTATGACATTGTTAGAAAGAATATTGAAGATTCTGTACCTAAAGC
rJMFF028A14+ TAAAGC
rJMSF027B17+ CTAAAGC
rJMSF025E06+ CCTAAAGC
____________________________________________________________
consensus GTTGCTGAGATCATATTATGACATTGTTAGAAAGAATATTGAAGATTCTGTACCTAAAGC
. : . : . : . : . : . :
JMFN009C01- AATCATGCACTTCCTGGTAAATCACACCAAACGAGAACTGCACAACGTATTTATCAAAAA
rJMSF042A21+ AATCATGCACTTCCTGGTAAATCACACCAAACGAGAACTGCACAACGTATTTATCAAAAA
rJMSF029G13+ AATCATGCACTTCCTGGTAAATCACACCAAACGAGAACTGCACAACGTATTTATCAAAAA
rJMFF028A14+ AATCATGCACTTCCTGGTAAATCACACCAAACGAGAACTGCACAACGTATTTATCAAAAA
rJMSF027B17+ AATCATGCACTTCCTGGTAAATCACACCAAACGAGAACTGCACAACGTATTTATCAAAAA
rJMSF025E06+ CATCATGCACTTCCTGGTAAATCACACCAAACGAGAACTGCACAACGTATTTATCAAAAA
____________________________________________________________
consensus AATCATGCACTTCCTGGTAAATCACACCAAACGAGAACTGCACAACGTATTTATCAAAAA
. : . : . : . : . : . :
JMFN009C01- GCTTTACAGAGATAACCTCTTTGAAGAGATGCTGCAAGAACCTGATGAGGTAGCTACAAA
rJMSF042A21+ GCTTTACAGAGATAACCTCTTTGAAGAGATGCTGCAAGAACCTGATGAGGTAGCTACAAA
rJMSF029G13+ GCTTTACAGAGATAACCTCTTTGAAGAGATGCTGCAAGAACCTGATGAGGTAGCTACAAA
rJMFF028A14+ GCTTTACAGAGATAACCTCTTTGAAGAGATGCTGCAAGAACCTGATGAGGTAGCTACAAA
rJMSF027B17+ GCTTTACAGAGATAACCTCTTTGAAGAGATGCTGCAAGAACCTGATGAGGTAGCTACAAA
rJMSF025E06+ GC-TTACAGAGATAACCTCTTTGAAGAGATGCTGCAAGAACCTGATGAGGTAGCTACAAA
____________________________________________________________
consensus GCTTTACAGAGATAACCTCTTTGAAGAGATGCTGCAAGAACCTGATGAGGTAGCTACAAA
. : . : . : . : . : . :
JMFN009C01- GAGAAAGCGCACTCGTGATACACTCCGTGTACTTCAGCAAGCATTCAAGACGTTGGATGA
rJMSF042A21+ GAGAAAGCGCACTCGTGATACACTCCGTGTACTTCAGCAAGCATTCAAGACGTTGGATGA
rJMSF029G13+ GAGAAAGCGCACTCGTGATACACTCCGTGTACTTCAGCAAGCATTCAAGACGTTGGATGA
rJMFF028A14+ GAGAAAGCGCACTCGTGATACACTCCGTGTACTTCAGCAAGCATTCAAGACGTTGGATGA
rJMSF027B17+ GAGAAAGCGCACTCGTGATACACTCCGTGTACTTCAGCAAGCATTCAAGACGTTGGATGA
JMFS101C02- AGCGCACTCGTGATACACTCCGTGTACTTCAGCAAGCATTCAAGACGTTGGATGA
rJMSF025E06+ GAGAAAGCGCACTCGTGATACACTCCGTGTACTTCAGCAAGCATTCAAGACGTTGGATGA
____________________________________________________________
consensus GAGAAAGCGCACTCGTGATACACTCCGTGTACTTCAGCAAGCATTCAAGACGTTGGATGA
. : . : . : . : . : . :
JMFN009C01- ATTGCCACTTGAAGCTGAGTCAGTTGAAAGAGGCTATAGTTTGAGTCCTGATCCAACAGG
rJMSF042A21+ ATTGCCACTTGAAGCTGAGTCAGTTGAAAGAGGCTATAGTTTGAGTCCTGATCCAACAGG
rJMSF029G13+ ATTGCCACTTGAAGCTGAGTCAGTTGAAAGAGGCTATAGTTTGAGTCCTGATCCAACAGG
rJMFF028A14+ ATTGCCACTTGAAGCTGAGTCAGTTGAAAGAGGCTATAGTTTGAGTCCTGATCCAACAGG
rJMSF027B17+ ATTGCCACTTGAAGCTGAGTCAGTTGAAAGAGGCTATAGTTTGAGTCCTGATCCAACAGG
JMFS101C02- ATTGCCACTTGAAGCTGAGTCAGTTGAAAGAGGCTATAGTTTGAGTCCTGATCCAACAGG
rJMSF025E06+ ATTGCCACTTGAAGCTGAGTCAGTTGAAAGAGGCTATAGTTTGAGTCCTGATCCAACAGG
____________________________________________________________
consensus ATTGCCACTTGAAGCTGAGTCAGTTGAAAGAGGCTATAGTTTGAGTCCTGATCCAACAGG
. : . : . : . : . : . :
JMFN009C01- ATTGCCAAAGATCCATGGGCTCCCCACATCCTCTATGTATACTACTAGTAGTTCAGTGGA
rJMSF042A21+ ATTGCCAAAGATCCATGGGCTCCCCACATCCTCTATGTATACTACTAGTAGTTCAGTGGA
rJMSF029G13+ ATTGCCAAAGATCCATGGGCTCCCCACATCCTCTATGTATACTACTAGTAGTTCAGTGGA
rJMFF028A14+ ATTGCCAAAGATCCATGGGCTCCCCACATCCTCTATGTATACTACTAGTAGTTCAGTGGA
rJMSF027B17+ ATTGCCAAAGATCCATGGGCTCCCCACATCCTCTATGTATACTACTAGTAGTTCAGTGGA
JMFS101C02- ATTGCCAAAGATCCATGGGCTCCCCACATCCTCTATGTATACTACTAGTAGTTCAGTGGA
rJMSF025E06+ ATTGCCAAAGATCCATGGGCTCCCCACATCCTCTATGTATACTACTAGTAGTTCAGTGGA
____________________________________________________________
consensus ATTGCCAAAGATCCATGGGCTCCCCACATCCTCTATGTATACTACTAGTAGTTCAGTGGA
. : . : . : . : . : . :
JMFN009C01- TTCATACACTGCTTCCCCCAAGAACCCAAGATCACGCAAATCTTCACATTCAGGGGAGCT
rJMSF042A21+ TTCATACACTGCTTCCCCCAAGAACCCAAGATCACGCAAATCTTCACATTCAGGGGAGCT
rJMSF029G13+ TTCATACACTGCTTCCCCCAAGAACCCAAGATCACGCAAATCTTCACATTCAGGGGAGCT
rJMFF028A14+ TTCATACACTGCTTCCCCCAAGAACCCAAGATCACGCAAATCTTCACATTCAGGGGAGCT
rJMSF027B17+ TTCATACACTGCTTCCCCCAAGAACCCAAGATCACGCAAATCTTCACATTCAGGGGAGCT
JMFS101C02- TTCATACACTGCTTCCCCCAAGAACCCAAGATCACGCAAATCTTCACATTCAGGGGAGCT
rJMSF025E06+ TTCATACACTGCTTCCCCCAAGAACCCAAGATCACGCAAATCTTCACATTCAGGGGAGCT
____________________________________________________________
consensus TTCATACACTGCTTCCCCCAAGAACCCAAGATCACGCAAATCTTCACATTCAGGGGAGCT
. : . : . : . : . : . :
JMFN009C01- TCAGTCACCCATGTATTATGTTGGTGGAGATTCTAATGGCAATGGACGCAATTCTCTTCT
rJMSF042A21+ TCAGTCACCCATGTATTATGTTGGTGGAGATTCTAATGGCAATGGACGCAATTCTCTTCT
rJMSF029G13+ TCAGTCACCCATGTATTATGTTGGTGGAGATTCTAATGGCAATGGACGCAATTCTCTTCT
rJMFF028A14+ TCAGTCACCCATGTATTATGTTGGTGGAGATTCTAATGGCAATGGACGCAATTCTCTTCT
rJMSF027B17+ TCAGTCACCCATGTATTATGTTGGTGGAGATTCTAATGGCAATGGACGCAATTCTCTTCT
JMFS101C02- TCAGTCACCCATGTATTATGTTGGTGGAGATTCTAATGGCAATGGACGCAATTCTCTTCT
rJMSF025E06+ TCAGTCACCCATGTATTATGTTGGTGGAGATTCTAATGGCAATGGACGCAATTCTCTTCT
____________________________________________________________
consensus TCAGTCACCCATGTATTATGTTGGTGGAGATTCTAATGGCAATGGACGCAATTCTCTTCT
. : . : . : . : . : . :
JMFN009C01- GGGACTTTACCCAACAATTGATGCATA
rJMSF042A21+ GGGACTTTACCCAACAATTGATGCATAAGAATGCAGAAACGAACAACATTGATAATTTGG
rJMSF029G13+ GGGACTTTACCCAACAATTGATGCATAAGAATGCAGAAACGAACAACATTGATAATTTGG
rJMFF028A14+ GGGACTTTACCCAACAATTGATGCATAAGAATGCAGAAACGAACAACATTGATAATTTGG
rJMSF027B17+ GGGACTTTACCCAACAATTGATGCATAAGAATGCAGAAACGAACAACATTGATAATTTGG
JMFS101C02- GGGACTTTACCCAACAATTGATGCATAAGAATGCAGAAACGAACAACATTGATAATTTGG
rJMSF025E06+ GGGACTTTACCCAACAATTGATGCATAAGAATGCAGAAACGAACAACATTGATAATTTGG
____________________________________________________________
consensus GGGACTTTACCCAACAATTGATGCATAAGAATGCAGAAACGAACAACATTGATAATTTGG
. : . : . : . : . : . :
rJMSF042A21+ ATTTATTTTATTTCCCTCTCCAACATTATTGCAGAGGCATGCAGGATCTAAAGCTCTGGA
rJMSF029G13+ ATTTATTTTATTTCCCTCTCCAACATTATTGCAGAGGCATGCAGGATCTAAAGCTCTGGA
rJMFF028A14+ ATTTATTTTATTTCCCTCTCCAACATTATTGCAGAGGCATGCAGGATCTAAAGCTCTGGA
rJMSF027B17+ ATTTATTTTATTTCCCTCTCCAACATTATTGCAGAGGCATGCAGGATCTAAAGCTCTGGA
JMFS101C02- ATTTATTTTATTTCCCTCTCCAACATTATTGCAGAGGCATGCAGGATCTAAAGCTCTGGA
rJMSF025E06+ ATTTATTTTATTTCCCTCTCCAACATTATTGCAGAGGCATGCAGGATCTAAAGCTCTGGA
____________________________________________________________
consensus ATTTATTTTATTTCCCTCTCCAACATTATTGCAGAGGCATGCAGGATCTAAAGCTCTGGA
. : . : . : . : . : . :
rJMSF042A21+ TCTGGTATGATAGGAGAGTTGCTATTCTTTTATGGAAAGATGATGCTTAGATGTATAATA
rJMSF029G13+ TCTGGTATGATAGGAGAGTTGCTATTCTTTTATGGAAAGATGATGCTTAGATGTATAATA
rJMFF028A14+ TCTGGTATGATAGGAGAGTTGCTATTCTTTTATGGAAAGATGATGCTTAGATGTATAATA
rJMSF027B17+ TCTGGTATGATAGGAGAGTTGCTATTCTTTTATGGAAAGATGATGCTTAGATGTATAATA
JMFS101C02- TCTGGTATGATAGGAGAGTTGCTATTCTTTTATGGAAAGATGATGCTTAGATGTATAATA
rJMSF025E06+ TCTGGTATGATAGGAGAGTTGCTATTCTTTTATGGAAAGATGATGCTTAGATGTATAATA
____________________________________________________________
consensus TCTGGTATGATAGGAGAGTTGCTATTCTTTTATGGAAAGATGATGCTTAGATGTATAATA
. : . : . : . : . : . :
rJMSF042A21+ TTATGCCTACGGCCTACACATGTTAGATATTTTTTGGTCCCTATAGCACATCATATATGC
rJMSF029G13+ TTATGCCTACGGCCTACACATGTTAGATATTTTTTGGTCCCTATAGCACATCATATATGC
rJMFF028A14+ TTATGCCTACGGCCTACACATGTTAGATATTTTTTGGTCCCTATAGCACATCATATATGC
rJMSF027B17+ TTATGCCTACGGCCTACACATGTTAGATATTTTTTGGTCCCTATAGCACATCATATATGC
JMFS101C02- TTATGCCTACGGCCTACACATGTTAGATATTTTTTGGTCCCTATAGCACATCATATATGC
rJMSF025E06+ TTATGCCTACGGCCTACACATGTTAGATATTTTTTGGTCCCTATAGCACATCATATATGC
____________________________________________________________
consensus TTATGCCTACGGCCTACACATGTTAGATATTTTTTGGTCCCTATAGCACATCATATATGC
. : . : . : . : . : . :
rJMSF042A21+ A
rJMSF029G13+ ATTAGTATAG
rJMFF028A14+ ATTAGTATAGGCTCT
rJMSF027B17+ ATTAGTATAGGCTCTGGAATGAATGAATAATTGGTAGCTGTGTGAACAGAAGCTGCAATC
JMFS101C02- ATTAGTATAGGCTCTGGAATGAATGAATAATTGGTAGCTGTGTGAACAGAAGCTGCAATC
rJMSF025E06+ ATTAGTATAGGCTCTGGAATGAATGAATAATTGGTAGCTGTGTGAACAGAAGCTGCAATC
____________________________________________________________
consensus ATTAGTATAGGCTCTGGAATGAATGAATAATTGGTAGCTGTGTGAACAGAAGCTGCAATC
. : . : . : . : . : . :
rJMSF027B17+ AGTTTTGTTTTTATTTTTTGTTATGGGTTGTGGCCAAC
JMFS101C02- AGTT
rJMSF025E06+ AGTTTTGTTTTTATTTTTTGTTATGGGTTGTGGCCAACTGCTGCCTGGTATTTGAATGCT
____________________________________________________________
consensus AGTTTTGTTTTTATTTTTTGTTATGGGTTGTGGCCAACTGCTGCCTGGTATTTGAATGCT