Contig 001370:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003B14+                                                 TCTTTTTTTTTTGTCCGACTT
rJMSF025D08+                                                 TCTTTTTTTTTTGTCCGACTT
                      ____________________________________________________________
consensus                                                    TCTTTTTTTTTTGTCCGACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003B14+          GTTCTAAGTATATCCTAATATATGAGGCATTTTTAAATCTGTATCATACTTAGACTAATC
rJMSF025D08+          GTTCTAAGTATATCCTAATATATGAGGCATTTTTAAATCTGTATCATACTTAGACTAATC
                      ____________________________________________________________
consensus             GTTCTAAGTATATCCTAATATATGAGGCATTTTTAAATCTGTATCATACTTAGACTAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003B14+          TCCTTTCACATCGGGCCAGCCCAATTAAGGGGCAAGTGTTGGCCATATTAATTTTTTTTT
rJMSF025D08+          TCCTTTCACATCGGGCCAGCCCAATTAAGGGGCAAGTGTTGGCCATATTAATTTTTTTTT
                      ____________________________________________________________
consensus             TCCTTTCACATCGGGCCAGCCCAATTAAGGGGCAAGTGTTGGCCATATTAATTTTTTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003B14+          TATACAAAATGAGTTTTTGATGAACGTATTCCTAACCTCTTTTAAGGGATAAGAATGCAC
rJMSF025D08+          TATACAAAATGAGTTTTTGATGAACGTATTCCTAACCTCTTTTAAGGGATAAGAATGCAC
                      ____________________________________________________________
consensus             TATACAAAATGAGTTTTTGATGAACGTATTCCTAACCTCTTTTAAGGGATAAGAATGCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003B14+          GACTACTCATGCTAACCAATATGAATATACAGGTTGAGGTTTTACATTGTCATAATTTAG
rJMSF025D08+          GACTACTCATGCTAACCAATATGAATATACAGGTTGAGGTTTTACATTGTCATAATTTAG
                      ____________________________________________________________
consensus             GACTACTCATGCTAACCAATATGAATATACAGGTTGAGGTTTTACATTGTCATAATTTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003B14+          ATGTATATATGTGATTATTGTTTGTATGTACCTTAATGTTGTACAGGTAGGCATGGGAGG
rJMSF005F14+                                                      AGGTAGGCATGGGAGG
rJMSF025D08+          ATGTATATATGTGATTATTGTTTGTATGTACCTTAATGTTGTACAGGTAGGCATGGGAGG
                      ____________________________________________________________
consensus             ATGTATATATGTGATTATTGTTTGTATGTACCTTAATGTTGTACAGGTAGGCATGGGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003B14+          ATATACCCAAGAAATGGGAGGAGGAGCCAATGGAAATGAAGAAAACATACACATGTCTGG
rJMSF005F14+          ATATACCCAAGAAATGGGAGGAGGAGCCAATGGAAATGAAGAAAACATACACATGTCTGG
rJMSF025D08+          ATATACCCAAGAAATGGGAGGAGGAGCCAATGGAAATGAAGAAAACATACACATGTCTGG
                      ____________________________________________________________
consensus             ATATACCCAAGAAATGGGAGGAGGAGCCAATGGAAATGAAGAAAACATACACATGTCTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003B14+          TCAGGGATAGATGTCATGAATTAATGTGGTTGTCCTCGAAGCTAAGGCATAATAATGAAA
rJMSF005F14+          TCAGGGATAGATGTCATGAATTAATGTGGTTGTCCTCGAAGCTAAGGCATAATAATGAAA
rJMSF025D08+          TCAGGGATAGATGTCATGAATTAATGTGGTTGTCCTCGAAGCTAAGGCATAATAATGAAA
                      ____________________________________________________________
consensus             TCAGGGATAGATGTCATGAATTAATGTGGTTGTCCTCGAAGCTAAGGCATAATAATGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003B14+          CAGTGGCCGATGTTTTAGGGTTATTTATATTTGGAAATTATATATATTTACCTCGTAATT
rJMSF005F14+          CAGTGGCCGATGTTTTAGGGTTATTTATATTTGGAAATTATATATATTTACCTCATAATT
rJMSF025D08+          CAGTGGCCGATGTTTTAGGGTTATTTATATTTGGAAATTATATATATTTACCTCGTAATT
                      ____________________________________________________________
consensus             CAGTGGCCGATGTTTTAGGGTTATTTATATTTGGAAATTATATATATTTACCTCGTAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003B14+          ATCCTAGTATAGAATGACGTGTAGCTTGTAGGGACCATATAAATGAAGAATGTTTTCTTA
rJMSF005F14+          ATCCTAGTATAGAATGACGTGTAGCTTGTAGGGACCATATAAATGAAGAATGTTTTCTTA
rJMSF025D08+          ATCCTAGTATAGAATGACGTGTAGCTTGTAGGGACCATATAAATGAAGAATGTTTTCTTA
                      ____________________________________________________________
consensus             ATCCTAGTATAGAATGACGTGTAGCTTGTAGGGACCATATAAATGAAGAATGTTTTCTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003B14+          TCCTTTCTTAATCACATCTATCGATCATAACATGGTAATGGCTGTAATATAATAGTCTCT
rJMSF005F14+          TCCTTTCTTAATCACATCTATCGATCATAACATGGTAATGGCTGTAATATAATAGTCTCT
rJMSF025D08+          TCCTTTCTTAATCACATCTATCGATCATAACATGGTAATGGCTGTAATATAATAGTCTCT
                      ____________________________________________________________
consensus             TCCTTTCTTAATCACATCTATCGATCATAACATGGTAATGGCTGTAATATAATAGTCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003B14+          TGTAGATATCTCTAGATATAATA                                     
rJMSF005F14+          TGTAGATATCTCTAGATATAATA                                     
rJMSF025D08+          TGTAGATATCTCTAGATATAATACTTTGTAAGTTTGGGTTGTGAAACCTTGTGATTCAAT
                      ____________________________________________________________
consensus             TGTAGATATCTCTAGATATAATACTTTGTAAGTTTGGGTTGTGAAACCTTGTGATTCAAT