Contig 001369:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005J09Sequence425022025ref|XP_011083461.1|8e-43PREDICTED: prostaglandin E synthase 2-like [Sesamum indicum]203001369 (3)
JMSF025B09Sequence706004951 (4)ref|XP_009762765.1|3e-68PREDICTED: UBX domain-containing protein 4 isoform X2 [Nicotiana sylvestris]725001369 (3)ref|XP_009589547.1|8e-39PREDICTED: UBX domain-containing protein 4 isoform X1 [Nicotiana tomentosiformi
JMSF027H11Sequence602004951 (4)emb|CDP16563.1|2e-29unnamed protein product [Coffea canephora]779001369 (3)ref|XP_009589547.1|6e-49PREDICTED: UBX domain-containing protein 4 isoform X1 [Nicotiana tomentosiformi

Alignment

This contig is upended


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rJMSF027H11+                                       TTCCAGAACATCAACAGATGTTCATTAAACA
                      ____________________________________________________________
consensus                                          TTCCAGAACATCAACAGATGTTCATTAAACA
 
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rJMSF027H11+          TCAAACTGCCTGATGGTTCCAGTTTACAGGTGAAGCTGTCAGTGATGGACACTTTGAGAG
                      ____________________________________________________________
consensus             TCAAACTGCCTGATGGTTCCAGTTTACAGGTGAAGCTGTCAGTGATGGACACTTTGAGAG
 
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rJMSF027H11+          CAGTCAAAGACCATATTGATAGAAACCAATCCATCGGCTTTTCTTCTTATGATCTTGCAG
rJMSF025B09+                                                                 TGCAG
                      ____________________________________________________________
consensus             CAGTCAAAGACCATATTGATAGAAACCAATCCATCGGCTTTTCTTCTTATGATCTTGCAG
 
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rJMSF027H11+          TTCCTTATCCACGCAAGGTCTTTACTGATCAAGATTTGGATAAAACATTATCAGAGTTGA
rJMSF025B09+          TTCCTTATCCACGCAAGGTCTTTACTGATCAAGATTTGGATAAAACATTATCAGAGTTGA
                      ____________________________________________________________
consensus             TTCCTTATCCACGCAAGGTCTTTACTGATCAAGATTTGGATAAAACATTATCAGAGTTGA
 
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rJMSF027H11+          ATCTCTTCAATCGACAAGCACTGATTGTGGTTCTTCATCACAAAGGAAGTTCTTCATTGC
rJMSF025B09+          ATCTCTTCAATCGACAAGCACTGATTGTGGTTCTTCATCACAAAGGAAGTTCTTCATTGC
                      ____________________________________________________________
consensus             ATCTCTTCAATCGACAAGCACTGATTGTGGTTCTTCATCACAAAGGAAGTTCTTCATTGC
 
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rJMSF027H11+          GTGACCAGAATATTTTGGCCAACAATACTAGTGCCACAAGTGGTAATGCCGAAGGATATT
rJMSF025B09+          GTGACCAGAATATTTTGGCCAACAATACTAGTGCCACAAGTGGTAATGCCGAAGGATATT
                      ____________________________________________________________
consensus             GTGACCAGAATATTTTGGCCAACAATACTAGTGCCACAAGTGGTAATGCCGAAGGATATT
 
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rJMSF027H11+          TTTCTCTTGTTAGACGACTCGTCTCTTATGTGAATCCTTTTTCCTATCTTGGTGGGGGTG
rJMSF025B09+          TTTCTCTTGTTAGACGACTCGTCTCTTATGTGAATCCTTTTTCCTATCTTGGTGGGGGTG
                      ____________________________________________________________
consensus             TTTCTCTTGTTAGACGACTCGTCTCTTATGTGAATCCTTTTTCCTATCTTGGTGGGGGTG
 
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rJMSF027H11+          CAAGCTCATCAGATGCTGTACAGGATTCTCAAAGCGCCACATTGCAATATGGTTCAAATC
rJMSF025B09+          CAAGCTCATCAGATGCTGTACAGGATTCTCAAAGCGCCACATTGCAATATGGTTCAAATC
                      ____________________________________________________________
consensus             CAAGCTCATCAGATGCTGTACAGGATTCTCAAAGCGCCACATTGCAATATGGTTCAAATC
 
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rJMSF027H11+          CTTCACCCCGGAATAATGTTGC-GGAAATGGTAGACCGTACAGTGTGAATTCATCCAACG
rJMSF025B09+          CTTCACCCCGGAATAATGTTGCGGGAAATGGTAGACCGTACAGTGTGAATTCATCCAACG
                      ____________________________________________________________
consensus             CTTCACCCCGGAATAATGTTGCGGGAAATGGTAGACCGTACAGTGTGAATTCATCCAACG
 
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rJMSF027H11+          GTAATACGCCTGGTAGCAGTAGCAGCAATGTTAAGAACAGAAAGCAGCCTTCATCTCCCT
rJMSF025B09+          GTAATACGCCTGGTAGCAGTAGCAGCAATGTTAAGAACAGAAAGCAGCCTTCATCTCCCT
                      ____________________________________________________________
consensus             GTAATACGCCTGGTAGCAGTAGCAGCAATGTTAAGAACAGAAAGCAGCCTTCATCTCCCT
 
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rJMSF027H11+          TTGGGAGCGGGAGCAATATCCATACGCTGAAACACGATGACGATAGTCAGTTTAGAGACG
rJMSF025B09+          TTGGGAGCGGGAGCAATATCCATACGCTGAAACACGATGACGATAGTCAGTTTAGAGACG
                      ____________________________________________________________
consensus             TTGGGAGCGGGAGCAATATCCATACGCTGAAACACGATGACGATAGTCAGTTTAGAGACG
 
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rJMSF027H11+          GGAATGCATTCTGGAATGGAAATTCTACACAGTTTGGTGGCGGTAACAATGACAGTAAAT
rJMSF005J09+                           GGAAATTNTACACAGTTTGGTGGCGGTAACAANGACAGTAAAT
rJMSF025B09+          GGAATGCATTCTGGAATGGAAATTCTACACAGTTTGGTGGCGGTAACAATGACAGTAAAT
                      ____________________________________________________________
consensus             GGAATGCATTCTGGAATGGAAATTCTACACAGTTTGGTGGCGGTAACAATGACAGTAAAT
 
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rJMSF027H11+          GATGGTATCCATGCATTTTCTCATATGTACATGTGGGTTTGTATTTGGCCCTCGAGTATC
rJMSF005J09+          GATGGTATCCATGCNTTTTCTCATANNTACANGTGGGTTNGTATNNGGCCCTCGAGTATC
rJMSF025B09+          GATGGTATCCATGCATTTTCTCATATGTACATGTGGGTTTGTATTTGGCCCTCGAGTATC
                      ____________________________________________________________
consensus             GATGGTATCCATGCATTTTCTCATATGTACATGTGGGTTTGTATTTGGCCCTCGAGTATC
 
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rJMSF027H11+          TGCTATACAGGCCCCCTCTTTGGTTCTT                                
rJMSF005J09+          TGCTATNCAGGCCCCCTCTTGGGTTCTTNTCTTCTAATNAAGTAATAANTGTNAAATAAA
rJMSF025B09+          TGCTATACAGGCCCCCTCTTTGGTTCTTTTCTTCTAATAAAGTAATAATTGTTAAATAAA
                      ____________________________________________________________
consensus             TGCTATACAGGCCCCCTCTTTGGTTCTTTTCTTCTAATAAAGTAATAATTGTTAAATAAA
 
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rJMSF005J09+          GNTGATTCATTTATGTCGTCTCATNCTCAT                              
rJMSF025B09+          GATGATTTATTTATGTCGTCTCATACTCATTTTGAAATCATATAACAATGTAATTATATG
                      ____________________________________________________________
consensus             GATGATTTATTTATGTCGTCTCATACTCATTTTGAAATCATATAACAATGTAATTATATG