Contig 001368:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF050G05Sequence581006153 (18)ref|XP_010923339.1|158PREDICTED: uncharacterized protein LOC105046447 [Elaeis guineensis]477001368 (3)ref|XP_010923339.1|103PREDICTED: uncharacterized protein LOC105046447 [Elaeis guineensis]
JMFN008H08Sequence624001368 (3)ref|XP_010923339.1|157PREDICTED: uncharacterized protein LOC105046447 [Elaeis guineensis]
JMSF024I02Sequence696001368 (3)ref|XP_010923339.1|151PREDICTED: uncharacterized protein LOC105046447 [Elaeis guineensis]

Alignment

This contig is upended


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JMFN008H08-                                                                   TGAA
rJMSF024I02+                                  TTCCGCCTNTCTGTCGCGCAAGATCTTGTCGGTGAA
                      ____________________________________________________________
consensus                                     TTCCGCCTNTCTGTCGCGCAAGATCTTGTCGGTGAA
 
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JMFN008H08-           TTCAATCCCTTAACCTCGTTTACGGATGTCCACGACGTCCTCGCTCAGTACGGCCTTCCG
rJMSF024I02+          TTCAATCCCTTAACCTCGTTTACGGATGTCCACGACGTCCTCGCTCAGTACGGCCTTCCG
                      ____________________________________________________________
consensus             TTCAATCCCTTAACCTCGTTTACGGATGTCCACGACGTCCTCGCTCAGTACGGCCTTCCG
 
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JMFN008H08-           AAGGGTCTCCTCCCCGACGTCGTCAAGTCCTACGATCTCGCCGACGACGGCTCCTTCACC
rJMSF024I02+          AAGGGTCTCCTCCCCGACGTCGTCAAGTCCTACGATCTCGCCGACGACGGCTCCTTCACC
                      ____________________________________________________________
consensus             AAGGGTCTCCTCCCCGACGTCGTCAAGTCCTACGATCTCGCCGACGACGGCTCCTTCACC
 
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JMFN008H08-           GTCGACCTCTCCACCACCTGCTACGTTCAGTTCTCCAACCTCGTCTACTACGATAAGACC
rJMFF050G05+                                ACGTTCAGTTCTCCAACCTCGTCTACTACGATAAGACC
rJMSF024I02+          GTCGACCTCTCCACCACCTGCTACGTTCAGTTCTCCAACCTCGTCTACTACGATAAGACC
                      ____________________________________________________________
consensus             GTCGACCTCTCCACCACCTGCTACGTTCAGTTCTCCAACCTCGTCTACTACGATAAGACC
 
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JMFN008H08-           ATCACCGGGAAGCTCAGCGAGGGCAAGATCTACGATATAACCGGGATTCAAGTCAAAAAG
rJMFF050G05+          ATCACCGGGAAGCTCAGCGAGGGCAAGATCTACGATATAACCGGGATTCAAGTCAAAAAG
rJMSF024I02+          ATCACCGGGAAGCTCAGCGAGGGCAAGATCTACGATATAACCGGGATTCAAGTCAAAAAG
                      ____________________________________________________________
consensus             ATCACCGGGAAGCTCAGCGAGGGCAAGATCTACGATATAACCGGGATTCAAGTCAAAAAG
 
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JMFN008H08-           GCGTTCATTTGGCTCTCCGTCACCGGAATCGACGTCCGCGCTGACTCCGGCGAGCTCGTT
rJMFF050G05+          GCGTTCATTTGGCTCTCCGTCACCGGAATCGACGTCCGCGCTGACTCCGGCGAGCTCGTT
rJMSF024I02+          GCGTTCATTTGGCTCTCCGTCACCGGAATCGACGTCCGCGCTGACTCCGGCGAGCTCGTT
                      ____________________________________________________________
consensus             GCGTTCATTTGGCTCTCCGTCACCGGAATCGACGTCCGCGCTGACTCCGGCGAGCTCGTT
 
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JMFN008H08-           TTCCACGTAGGGTTTCTCTCCGAGACCTTGCCTGCTTCCCAATTTGAGACTATACAATCC
rJMFF050G05+          TTCCACGTAGGGTTTCTCTCCGAGACCTTGCCTGCTTCCCAATTTGAGACTATACAATCC
rJMSF024I02+          TTCCACGTAGGGTTTCTCTCCGAGACCTTGCCTGCTTCCCAATTTGAGACTATACAATCC
                      ____________________________________________________________
consensus             TTCCACGTAGGGTTTCTCTCCGAGACCTTGCCTGCTTCCCAATTTGAGACTATACAATCC
 
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JMFN008H08-           TGCAAATCGCACCTCTCGTCAAGCTCAGGT                              
rJMFF050G05+          TGCAAATCGCACCTCTCGTCAAGCTCAGGT                              
rJMSF024I02+          TGCAAATCGCACCTCTCGTCAAGCTCAGGTAAAACGTGAATTCAATTTTGAAAATATTTC
                      ____________________________________________________________
consensus             TGCAAATCGCACCTCTCGTCAAGCTCAGGTAAAACGTGAATTCAATTTTGAAAATATTTC
 
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rJMSF024I02+          TGCTGATTTGGAGGAGATTCTTCATTTTTCCGCTCTAATTGCAGGTCAGAGCCGAGTTCA
                      ____________________________________________________________
consensus             TGCTGATTTGGAGGAGATTCTTCATTTTTCCGCTCTAATTGCAGGTCAGAGCCGAGTTCA
 
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rJMSF024I02+          GATAGCTTGAACGATGAAACCGATGCGTTTTCTGCAGAAGAGAAAGGACTTTGGGACATG
                      ____________________________________________________________
consensus             GATAGCTTGAACGATGAAACCGATGCGTTTTCTGCAGAAGAGAAAGGACTTTGGGACATG
 
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rJMSF024I02+          TGAATTTCCGCGAGAAAATCTTTCGAAACGGATCGGACGGTCCAGATTTGTGTGCACCTG
                      ____________________________________________________________
consensus             TGAATTTCCGCGAGAAAATCTTTCGAAACGGATCGGACGGTCCAGATTTGTGTGCACCTG
 
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rJMSF024I02+          TGTAATCCAATAATGCTACCGTGTGATCAGCTTCTGTCAATGCATTAATAAATAAACTGT
                      ____________________________________________________________
consensus             TGTAATCCAATAATGCTACCGTGTGATCAGCTTCTGTCAATGCATTAATAAATAAACTGT