Contig 001366:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024D06+                          AGGGTAGNAAGGTAGAGAAAACGNATCCGAGCAAAGCTGTTAGT
                      ____________________________________________________________
consensus                             AGGGTAGNAAGGTAGAGAAAACGNATCCGAGCAAAGCTGTTAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024D06+          CCTATAGCATCAGAGGAATGTGCAGCTGATACGGTTAAAGGAAAAATTACAGAGGAAGTT
                      ____________________________________________________________
consensus             CCTATAGCATCAGAGGAATGTGCAGCTGATACGGTTAAAGGAAAAATTACAGAGGAAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036A19+                                        GTTCAAACACCAACGAATCNGAAACGAACC
rJMSF024D06+          ACCGCAAAAGATATGGCCACTGAACGTGCAGTTCAAACACCAAAGAATCTGAAACGAACC
                      ____________________________________________________________
consensus             ACCGCAAAAGATATGGCCACTGAACGTGCAGTTCAAACACCAACGAATCTGAAACGAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036A19+          CNTAGGAGAAAGAGTGCCCACAAGCTGATTNGTNAATCAAAGAAAATNCAGCTAAGGAAA
rJMSF024D06+          CATAGGAGAAAGAGTGCCCACAAGCTGATTTGTAAATCAAAGAAAATACAGCTAAGGAAA
                      ____________________________________________________________
consensus             CATAGGAGAAAGAGTGCCCACAAGCTGATTTGTAAATCAAAGAAAATACAGCTAAGGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036A19+          GCTGTGCGGCAGTCAATAGGCAGCAACAAGGCAATTGTAGAATTTGGTGATGATATGAGT
rJMSF024D06+          GCTGTGCGGCAGTCAATAGGCAGCAACAAGGCAATTGTAGAATTTGGTGATGATATGAGT
                      ____________________________________________________________
consensus             GCTGTGCGGCAGTCAATAGGCAGCAACAAGGCAATTGTAGAATTTGGTGATGATATGAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036A19+          CTCAAACTTCTGAGAGAGCGAGTGAAGAAGGAGAAAAGAAGATTATNTTTCAATGGAAAA
rJMSF024D06+          CTCAAACTTCTGAGAGAGCGAGTGAAGAAGGAGAAAAGAAGATTATGTTTCAATGGAAAA
                      ____________________________________________________________
consensus             CTCAAACTTCTGAGAGAGCGAGTGAAGAAGGAGAAAAGAAGATTATGTTTCAATGGAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036A19+          GGTGGAGGAGAGCTGGAAGCTGAAGCTGAAATGGAAAGGCNGTGTAGAATCAAGAACAAG
rJMSF024D06+          GGTGGAGGAGAGCTGGAAGCTGAAGCTGAAATGGAAAGGCTGTGTAGAATCAAGAACAAG
                      ____________________________________________________________
consensus             GGTGGAGGAGAGCTGGAAGCTGAAGCTGAAATGGAAAGGCTGTGTAGAATCAAGAACAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036A19+          GTAGAAAGACTCCAGCTGGTTCTGTTAAGGCTTCGTGATGCTCGTTATAACAAAATGGTG
rJMSF024D06+          GTAGAAAGACTCCAGCTGGTTCTGTTAAGGCTTCGTGATGCTCGTTATAACAAAATGGTG
                      ____________________________________________________________
consensus             GTAGAAAGACTCCAGCTGGTTCTGTTAAGGCTTCGTGATGCTCGTTATAACAAAATGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036A19+          GAATCACCTACACCAAATTCTCCGTTTATGTATGTACCTGTTGCAGAGATCAAAGAGAAA
rJMSF024D06+          GAATCACCTACACCAAATTCTCCGTTTATGTATGTACCTGTTGCAGAGATCAAAGAGAAA
                      ____________________________________________________________
consensus             GAATCACCTACACCAAATTCTCCGTTTATGTATGTACCTGTTGCAGAGATCAAAGAGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036A19+          ACACAGGTTTCCTGATATATTCTTTGTATGTTTATAGAGGATATAGGACCTTGTAGGCCA
rJMSF024D06+          ACACAGGTTTCCTGATATATTCTTTGTATGTTTATAGAGGATATAGGACCTTGTAGGCCA
                      ____________________________________________________________
consensus             ACACAGGTTTCCTGATATATTCTTTGTATGTTTATAGAGGATATAGGACCTTGTAGGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036A19+          GCTGAATAGGGGTATAAGGCTCAATATAAAAGGTTTCGGGATCACTACTTGCTCCCCTCG
rJMSF024D06+          GCTGAATAGGGGTATAAGGCTCAATATAAAAGGTTTCGGGATCACTACTTGCTCCCCTCG
                      ____________________________________________________________
consensus             GCTGAATAGGGGTATAAGGCTCAATATAAAAGGTTTCGGGATCACTACTTGCTCCCCTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036A19+          GTTGTACGAAAAATTAGAAATGATGGAGGCTTTTGGGTAAAAGGTTCAAAATGAATTTGC
rJMSF024D06+          GTTGTACGAAAAATTAGAAATGATGGAGGCTTTTGGGTAAAAGGTTCAAAATGAATTTGC
                      ____________________________________________________________
consensus             GTTGTACGAAAAATTAGAAATGATGGAGGCTTTTGGGTAAAAGGTTCAAAATGAATTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036A19+          TGAAGCAGCAGATTCATGTTTTAATGTAATCAC                           
rJMSF024D06+          TGAAGCAGCAGATTCATGTTTTAATGTAATCACCAAGTCTTCATTTTGTATGTATAATAA
                      ____________________________________________________________
consensus             TGAAGCAGCAGATTCATGTTTTAATGTAATCACCAAGTCTTCATTTTGTATGTATAATAA