Contig 001365:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016D06Sequence508002283 (5)784001365 (5)ref|XP_009621483.1|5e-68PREDICTED: transcription initiation factor TFIID subunit 12 isoform X2 [Nicotia
JMSF024B20Sequence660002283 (5)ref|XP_006341120.1|2e-08PREDICTED: transcription initiation factor TFIID subunit 12-like [Solanum tuber763001365 (5)ref|XP_009621483.1|1e-53PREDICTED: transcription initiation factor TFIID subunit 12 isoform X2 [Nicotia
JMSF027N15Sequence647002283 (5)ref|XP_006341120.1|2e-08PREDICTED: transcription initiation factor TFIID subunit 12-like [Solanum tuber730001365 (5)ref|XP_004246524.1|8e-58PREDICTED: transcription initiation factor TFIID subunit 12 [Solanum lycopersic
JMSF033G20Sequence659002283 (5)ref|XP_006341120.1|2e-08PREDICTED: transcription initiation factor TFIID subunit 12-like [Solanum tuber736001365 (5)ref|XP_009621483.1|9e-58PREDICTED: transcription initiation factor TFIID subunit 12 isoform X2 [Nicotia
JMSF034G20Sequence515002283 (5)694001365 (5)ref|XP_009621483.1|9e-52PREDICTED: transcription initiation factor TFIID subunit 12 isoform X2 [Nicotia

Alignment

This contig is upended


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rJMSF027N15+                                                            GAGCNAGAGN
rJMSF033G20+                                                            GAGCAAGAGN
rJMSF016D06+           TTAATAAGACTTCTGCTGCAGAGACTGAGGAGCCTTGTAATAGGATTCTGAGCAAGAGA
                      ____________________________________________________________
consensus              TTAATAAGACTTCTGCTGCAGAGACTGAGGAGCCTTGTAATAGGATTCTGAGCAAGAGA
 
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rJMSF027N15+          AGCATCCAGGAGCTAGTTACCCAGATTGACCCACCAGGGAAGTTGGATGCTGAGGTTGAA
rJMSF033G20+          AGCATCCNGGAGCTAGNTACCCAGATTGACCCAACAGGGAAGTTGGATGCTGAGGTTGAA
rJMSF016D06+          AGCATCCAGGAGCTAGTTACCCAGATTGACCCAACAGGGAAGTTGGATGCTGAGGTTGAA
rJMSF034G20+                                            CAGGGAAGTTGGATGCTGAGGTTGAA
rJMSF024B20+                           TACCCAGATTGACCCACCAGGGAAGTTGGATGCTGAGGTTGAA
                      ____________________________________________________________
consensus             AGCATCCAGGAGCTAGTTACCCAGATTGACCCACCAGGGAAGTTGGATGCTGAGGTTGAA
 
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rJMSF027N15+          GACATCCTTGTGGATATTGCAGATGAATTTGTGGAATCTCTTACAACCTTTGGTTGCTCA
rJMSF033G20+          GACATCCTTGTGGATATTGCAGATGAATTTGTGGAATCTCTTACAACCTTTGGTTGCTCA
rJMSF016D06+          GACATCCTTGTGGATATTGCAGATGAATTTGTGGAATCTCTTACAACCTTTGGTTGCTCA
rJMSF034G20+          GACATCCTTGTGGATATTGCAGATGAATTTGTGGAATCTCTTACAACCTTTGGTTGCTCA
rJMSF024B20+          GACATCCTTGTGGATATTGCAGATGAATTTGTGGAATCTCTTACAACCTTTGGTTGCTCA
                      ____________________________________________________________
consensus             GACATCCTTGTGGATATTGCAGATGAATTTGTGGAATCTCTTACAACCTTTGGTTGCTCA
 
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rJMSF027N15+          TTGGCCAAACATCGTAAGTCCTCAACACTGGAAGCAAAGGACATCCTTCTACATGCTGAA
rJMSF033G20+          TTGGCCAAACATCGTAAGTCCTCAACACTGGAAGCAAAGGACATCCTTCTACATGCTGAA
rJMSF016D06+          TTGGCCAAACATCGTAAGTCCTCAACACTGGAAGCAAAGGACATCCTTCTACATGCTGAA
rJMSF034G20+          TTGGCCAAACATCGTAAGTCCTCAACACTGGAAGCAAAGGACATCCTTCTACATGCTGAA
rJMSF024B20+          TTGGCCAAACATCGTAAGTCCTCAACACTGGAAGCAAAGGACATCCTTCTACATGCTGAA
                      ____________________________________________________________
consensus             TTGGCCAAACATCGTAAGTCCTCAACACTGGAAGCAAAGGACATCCTTCTACATGCTGAA
 
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rJMSF027N15+          AGGCACTGGAACATTACTCTTCCTGTATTTAGTGGGGATGAGATTAGGACCTACAAGAAA
rJMSF033G20+          AGGCACTGGAACATTACTCTTCCTGTATTTAGTGGGGATGAGATTAGGACCTACAAGAAA
rJMSF016D06+          AGGCACTGGAACATTACTCTTCCTGTATTTAGTGGGGATGAGATTAGGACCTACAAGAAA
rJMSF034G20+          AGGCACTGGAACATTACTCTTCCTGTATTTAGTGGGGATGAGATTAGGACCTACAAGAAA
rJMSF024B20+          AGGCACTGGAACATTACTCTTCCTGTATTTAGTGGGGATGAGATTAGGACCTACAAGAAA
                      ____________________________________________________________
consensus             AGGCACTGGAACATTACTCTTCCTGTATTTAGTGGGGATGAGATTAGGACCTACAAGAAA
 
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rJMSF027N15+          CCTCTTACAAGTGACATTCATAGAGAACGGCTGGCTGCAATCAAGAGATCGTCTGTTGCT
rJMSF033G20+          CCTCTTACAAGTGACATTCATAGAGAACGGCTGGCTGCAATCAAGAGATCGTCTGTTGCT
rJMSF016D06+          CCTCTTACAAGTGACATTCATAGAGAACGGCTGGCTGCAATCAAGAGATCGTCTGTTGCT
rJMSF034G20+          CCTCTTACAAGTGACATTCATAGAGAACGGCTGGCTGCAATCAAGAGATCGTCTGTTGCT
rJMSF024B20+          CCTCTTACAAGTGACATTCATAGAGAACGGCTGGCTGCAATCAAGAGATCGTCTGTTGCT
                      ____________________________________________________________
consensus             CCTCTTACAAGTGACATTCATAGAGAACGGCTGGCTGCAATCAAGAGATCGTCTGTTGCT
 
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rJMSF027N15+          GTAAAGACAACCAATACAAAGAGCGCTGTTGGACAAGGTGGGAATTCAAAGACGACACCA
rJMSF033G20+          GTAAAGACAACCAATACAAAGAGCGCTGTTGGACAAGGTGGGAATTCAAAGACGACACCA
rJMSF016D06+          GTAAAGACAACCAATACAAAGAGCGCTGTTGGACAAGGTGGGAATTCAAAGACGACACCA
rJMSF034G20+          GTAAAGACAACCAATACAAAGAGCGCTGTTGGACAAGGTGGGAATTCAAAGACGACACCA
rJMSF024B20+          GTAAAGACGACCAATACAAAGAGCGCTGTTGGACAAGGTGGGAATTCAAAGACGACACCA
                      ____________________________________________________________
consensus             GTAAAGACAACCAATACAAAGAGCGCTGTTGGACAAGGTGGGAATTCAAAGACGACACCA
 
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rJMSF027N15+          CTTGGAAAAGGTCCTATCAATATTTTGACTTCCCCTAACGCAAAGACCTGAAGCTGTGGG
rJMSF033G20+          CTTGGAAAAGGTCCTATCAATATTTTGACTTCCCCTAACGCAAAGACCTGAAGCTGTGGG
rJMSF016D06+          CTTGGAAAAGGTCCTATCAATATTTTGACTTCCCCTAACGCAAAGACCTGAAGCTGTGGG
rJMSF034G20+          CTTGGAAAAGGTCCTATCAATATTTTGACTTCCCCTAACGCAAAGACCTGAAGCTGTGGG
rJMSF024B20+          CTTGGAAAAGGTCCTATCAATATTTTGACTTCCCCTAACGCAAAGACCTGAAGCTGTGGG
                      ____________________________________________________________
consensus             CTTGGAAAAGGTCCTATCAATATTTTGACTTCCCCTAACGCAAAGACCTGAAGCTGTGGG
 
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rJMSF027N15+          AGAGAGTCTGCTCTCCGATTAGGGAGACTGGCTGTGCCATCTTTGTTATGTCTCCTTGAG
rJMSF033G20+          AGAGAGTCTGCTCTCCGATTAGGGAGACTGGCTGTGCCATCTTTGTTATGTCTCCTTGAG
rJMSF016D06+          AGAGAGTCTGCTCTCCGATTAGGGAGACTGGCTGTGCCATCTTTGTTATGTCTCCTTGAG
rJMSF034G20+          AGAGAGTCTGCTCTCCGATTAGGGAGACTGGCTGTGCCATCTTTGTTATGTCTCCTTGAG
rJMSF024B20+          AGAGAGTCTGCTCTCCGATTAGGGAGACTGGCTGTGCCATCTTTGTTATGTCTCCTTGAG
                      ____________________________________________________________
consensus             AGAGAGTCTGCTCTCCGATTAGGGAGACTGGCTGTGCCATCTTTGTTATGTCTCCTTGAG
 
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rJMSF027N15+          GTCAATGTGAAAGGTTGTCTCTATTTGCGGGATTAGTTTGTACCCAAGCTGTATTTTACA
rJMSF033G20+          GTCAATGTGAAAGGTTGTCTCTATTTGCGGGATTAGTTTGTACCCAAGCTGTATTTTACA
rJMSF016D06+          GTCAATGTGAAAGGTTGTCTCTATTTGCGGGATTAGTTTGTACCCAAGCTGTATTTTACA
rJMSF034G20+          GTCAATGTGAAAGGTTGTCTCTATTTGCGGGATTAGTTTGTACCCAAGCTGTATTTTACA
rJMSF024B20+          GTCAATGTGAAAGGTTGTCTCTATTTGCGGGATTAGTTTGTACCCAAGCTGTATTTTACA
                      ____________________________________________________________
consensus             GTCAATGTGAAAGGTTGTCTCTATTTGCGGGATTAGTTTGTACCCAAGCTGTATTTTACA
 
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rJMSF027N15+          TCATGCTTCGTGTAAATTACTAAACGGTAAGTGGAGCGACGAATAAATTGATAGACCGAC
rJMSF033G20+          TCATGCTTCGTGTAAATTACTAAACGGTAAGTGGAGCGACGAATAAATTGATAGACCGAC
rJMSF016D06+          TCATGCTTCGTGTAAATTACTAAACGGTAAGTGGAGCGACGAATAAATTGATAGACCGAC
rJMSF034G20+          TCATGCTTCGTGTAAATTACTAAACGGTAAGTGGAGCGACGAATAAATTGATAGACCGAC
rJMSF024B20+          TCATGCTTCGTGTAAATTACTAAACGGTAAGTGGAGCGACGAATAAATTGATAGACCGAC
                      ____________________________________________________________
consensus             TCATGCTTCGTGTAAATTACTAAACGGTAAGTGGAGCGACGAATAAATTGATAGACCGAC
 
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rJMSF027N15+          CCGAAGGGGAGAGAATGGAGATGCTCCAAGGAAATACATGCTGTAATGGGAAAGTATAAA
rJMSF033G20+          CCGAAGGGGAGAGAATGGAGATGCTCCAAGGAAATACATGCTGTAATGGGAAAGTATAAA
rJMSF016D06+          CCGAAGGGGAGAGAATGGAGATGCTCCAAGGAAATACATGCTGTAATGGGAAAGTATAAA
rJMSF034G20+          CCGAAGGGGAGAGAATGGAGATGCTCCAAGGAAATACATGCTGTAATGGGAAAGTATAAA
rJMSF024B20+          CCGAAGGGGAGAGAATGGAGATGCTCCAAGGAAATACATGCTGTAATGGGAAAGTATAAA
                      ____________________________________________________________
consensus             CCGAAGGGGAGAGAATGGAGATGCTCCAAGGAAATACATGCTGTAATGGGAAAGTATAAA
 
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rJMSF027N15+          TGTGGAATGAAATGATCAAAAGATTAAGCTCCTATTTGTAGCAAGGATGACAATGTAACA
rJMSF033G20+          TGTGGAATGAAATGATCAAAAGATTAAGCTCCTATTTGTAGCAAGGATGAC         
rJMSF016D06+          TGTGGAATGAAATGATCAAAAGATTAAGCTCCTATTTGTAGCAAGGATGACAATGTAACA
rJMSF034G20+          TGTGGAATGAAATGATCAAAAGATTAAGCTCCTATTTGTAGCAAGGATGACAATGTAACA
rJMSF024B20+          TGTGGAATGAAATGATCAAAAGATTAAGCTCCTATTTGTAGCAAGGATGACAATGTAACA
                      ____________________________________________________________
consensus             TGTGGAATGAAATGATCAAAAGATTAAGCTCCTATTTGTAGCAAGGATGACAATGTAACA
 
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rJMSF024B20+          TTTTACCTTCATGTTTGTTAAATTTGTGGAATATTTAACCAGCACAGTATGGTGTCTAAC
                      ____________________________________________________________
consensus             TTTTACCTTCATGTTTGTTAAATTTGTGGAATATTTAACCAGCACAGTATGGTGTCTAAC