Contig 001363:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF023A11Sequence678007942 (5)ref|XP_009609977.1|1e-36PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 [Nicotiana tomentosiformis]736001363 (2)ref|XP_009609977.1|2e-57PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 [Nicotiana tomentosiformis]
JMSF031L01Sequence646007942 (5)ref|XP_009609977.1|1e-20PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 [Nicotiana tomentosiformis]335001363 (2)ref|XP_006348364.1|4e-07PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Solanum tu

Alignment

This contig is upended


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rJMSF023A11+                                                      CTCAGAAACCTTCACG
                      ____________________________________________________________
consensus                                                         CTCAGAAACCTTCACG
 
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rJMSF023A11+          ACCCGAGCAAATCAAAGCCGGTAACCATTTTGCATGCCCGGATCGATCTCGTGACCATAG
                      ____________________________________________________________
consensus             ACCCGAGCAAATCAAAGCCGGTAACCATTTTGCATGCCCGGATCGATCTCGTGACCATAG
 
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rJMSF023A11+          ATTGAAGACGGGAGTGGATGTCATGAACCGCACTTCTGGTAGTGTCCTGAGAAATGCGAA
                      ____________________________________________________________
consensus             ATTGAAGACGGGAGTGGATGTCATGAACCGCACTTCTGGTAGTGTCCTGAGAAATGCGAA
 
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rJMSF023A11+          TAGGAACAGACCGCCAATAATGGGAACGTATTCCGAGAACATGGAGATCTCGGATGCCAC
                      ____________________________________________________________
consensus             TAGGAACAGACCGCCAATAATGGGAACGTATTCCGAGAACATGGAGATCTCGGATGCCAC
 
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rJMSF023A11+          CGCGAGTGACTGGTCCCTTTTCACGAGCTCCGATGAAGCATCCTTCACTACCGAGAGCAC
                      ____________________________________________________________
consensus             CGCGAGTGACTGGTCCCTTTTCACGAGCTCCGATGAAGCATCCTTCACTACCGAGAGCAC
 
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rJMSF023A11+          CCGGGACTCTTTCAGTACGGTCGATTACGCTGATGCCAGCGCCCTCGACCCGTTCTCTTC
                      ____________________________________________________________
consensus             CCGGGACTCTTTCAGTACGGTCGATTACGCTGATGCCAGCGCCCTCGACCCGTTCTCTTC
 
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rJMSF031L01+                                   GACTATAACTCGAAGAGAACAATCACGTGTAGCAT
rJMSF023A11+          GTTCATCAACACAATGTCTGCCCCGGACTATAACTCGAAGAGAACAATCACGTGTAGCAT
                      ____________________________________________________________
consensus             GTTCATCAACACAATGTCTGCCCCGGACTATAACTCGAAGAGAACAATCACGTGTAGCAT
 
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rJMSF031L01+          GTTCTCGGGAACTAGGCCCCACACAGCATTTTTTTNGGAGAACAANGGGTTTGTCGTGGA
rJMSF023A11+          GTTCTCGGGAACTAGGCCCCACACAGCATTTTTTTCGGAGAACAAAGGGTTTGTCGTGGA
                      ____________________________________________________________
consensus             GTTCTCGGGAACTAGGCCCCACACAGCATTTTTTTCGGAGAACAAAGGGTTTGTCGTGGA
 
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rJMSF031L01+          TTCACACCCCGGTAGNGTACAGGGAGGNGACGACGACNTGATGGAGNTTAGCTTTTCTCA
rJMSF023A11+          TTCACACCCCGGTAGTGTACAGGGAGGCGACGACGACCTGATGGAGGTTAGCTTTTCTCA
                      ____________________________________________________________
consensus             TTCACACCCCGGTAGTGTACAGGGAGGCGACGACGACCTGATGGAGGTTAGCTTTTCTCA
 
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rJMSF031L01+          TCCTAGTGAAGCTTTTTTTGTGGATAGACATGTAAATTACGGGTANGAGTCTAGATATGT
rJMSF023A11+          TCCTAGTGAAGCTTTTTTTGTGGATAGACATGTAAATTACGGGTACGAGTCTAGATATGT
                      ____________________________________________________________
consensus             TCCTAGTGAAGCTTTTTTTGTGGATAGACATGTAAATTACGGGTACGAGTCTAGATATGT
 
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rJMSF031L01+          AGCTCCTCAGACTTACTATGATCAATTGTAGAATGTAATTTCCTNAANCANTATTANATG
rJMSF023A11+          AGCTCCTCAGACTTACTATGATCAATTGTAGAATGTAATTTCCTAAATCATTATTATATG
                      ____________________________________________________________
consensus             AGCTCCTCAGACTTACTATGATCAATTGTAGAATGTAATTTCCTAAATCATTATTATATG
 
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rJMSF031L01+          GGCAA                                                       
rJMSF023A11+          GGCAAGCTTAGTTAGGTAGAGAGAAGTGTAGAAGTTTAACTGGATGTGCCTCAAATTTTG
                      ____________________________________________________________
consensus             GGCAAGCTTAGTTAGGTAGAGAGAAGTGTAGAAGTTTAACTGGATGTGCCTCAAATTTTG
 
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rJMSF023A11+          ATTTCTCAATATTTCATTGAATGGGGCACATTTATTGTGGCTTTTGAATCAACCTTTCTT
                      ____________________________________________________________
consensus             ATTTCTCAATATTTCATTGAATGGGGCACATTTATTGTGGCTTTTGAATCAACCTTTCTT