Contig 001360:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007J08Sequence331003558 (3)ref|XP_009774804.1|8e-33PREDICTED: plant intracellular Ras-group-related LRR protein 9-like [Nicotiana 763001360 (3)ref|XP_009797807.1|1e-67PREDICTED: plant intracellular Ras-group-related LRR protein 1-like [Nicotiana
JMSF022N17Sequence620003558 (3)ref|XP_009797807.1|4e-65PREDICTED: plant intracellular Ras-group-related LRR protein 1-like [Nicotiana 743001360 (3)ref|XP_009797807.1|1e-61PREDICTED: plant intracellular Ras-group-related LRR protein 1-like [Nicotiana
JMSF023N17Sequence597003558 (3)ref|XP_009797807.1|2e-61PREDICTED: plant intracellular Ras-group-related LRR protein 1-like [Nicotiana 672001360 (3)ref|XP_009797807.1|1e-57PREDICTED: plant intracellular Ras-group-related LRR protein 1-like [Nicotiana

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF007J08+ CTAGATGTGCATTTCAATGAGCTTCGAGGACTTCCACATTCAATTGG
rJMSF022N17+ CGAGGACTTCCACATTCAATTGG
                      ____________________________________________________________
consensus CTAGATGTGCATTTCAATGAGCTTCGAGGACTTCCACATTCAATTGG
 
. : . : . : . : . : . :
rJMSF007J08+ AAAGTTGTCACGTCTTGAAATCCTCAACCTAAGCAGTAATTTCAGTGATCTTACCGAACT
rJMSF023N17+ CACGTCTTGAAATCCTCAACCTAAGCAGTAATTTCAGTGATCTTACCGAACT
rJMSF022N17+ AAAGTTGTCACGTCTTGAAATCCTCAACCTAAGCAGTAATTTCAGTGATCTTACCGAACT
                      ____________________________________________________________
consensus AAAGTTGTCACGTCTTGAAATCCTCAACCTAAGCAGTAATTTCAGTGATCTTACCGAACT
 
. : . : . : . : . : . :
rJMSF007J08+ TCCTGATTCTCTTGGTGATTTGAGCAATCTCAAAGAGATTGATCTGAGCAACAATCAAAT
rJMSF023N17+ TCCTGATTCTCTTGGTGATTTGAGCAATCTCAAAGAGATTGATCTGAGCAACAATCAAAT
rJMSF022N17+ TCCTGATTCTCTTGGTGATTTGAGCAATCTCAAAGAGATTGATCTGAGCAACAATCAAAT
                      ____________________________________________________________
consensus TCCTGATTCTCTTGGTGATTTGAGCAATCTCAAAGAGATTGATCTGAGCAACAATCAAAT
 
. : . : . : . : . : . :
rJMSF007J08+ CCGTGAATTGCCTTATTCAATTTCCCGACTTGACAATCTTACCAAGCTTAATGTGGATCA
rJMSF023N17+ CCGTGAATTGCCTTATTCAATTTCCCGACTTGACAATCTTACCAAGCTTAATGTGGATCA
rJMSF022N17+ CCGTGAATTGCCTTATTCAATTTCCCGACTTGACAATCTTACCAAGCTTAATGTGGATCA
                      ____________________________________________________________
consensus CCGTGAATTGCCTTATTCAATTTCCCGACTTGACAATCTTACCAAGCTTAATGTGGATCA
 
. : . : . : . : . : . :
rJMSF007J08+ GAACCCTCTTGTGATTCCTCCAAAGGAGGTTGTAAATGAAGGAATCCAAGCTGTGAAAGC
rJMSF023N17+ GAACCCTCTTGTGATTCCTCCAAAGGAGGTTGTAAATGAAGGAATCCAAGCTGTGAAAGC
rJMSF022N17+ GAACCCTCTTGTGATTCCTCCAAAGGAGGTTGTAAATGAAGGAATCCAAGCTGTGAAAGC
                      ____________________________________________________________
consensus GAACCCTCTTGTGATTCCTCCAAAGGAGGTTGTAAATGAAGGAATCCAAGCTGTGAAAGC
 
. : . : . : . : . : . :
rJMSF007J08+ TTATATGGTTAAAAGACGACTTGACATGTTGATGGAAGAAGAGCGGCAATACACGAAAGA
rJMSF023N17+ TTATATGGTTAAAAGACGACTTGACATGTTGATGGAAGAAGAGCGGCAATACACGAAAGA
rJMSF022N17+ TTATATGGTTAAAAGACGACTTGACATGTTGATGGAAGAAGAGCGGCAATACACGAAAGA
                      ____________________________________________________________
consensus TTATATGGTTAAAAGACGACTTGACATGTTGATGGAAGAAGAGCGGCAATACACGAAAGA
 
. : . : . : . : . : . :
rJMSF007J08+ AGATACGGCGGACCAAACACCGAAAAGCATATTATCTCGTAGTGCTACATGGTTCACTAG
rJMSF023N17+ AGATACGGCGGACCAAACACCGAAAAGCATATTATCTCGTAGTGCTACATGGTTCACTAG
rJMSF022N17+ AGATACGGCGGACCAAACACCGAAAAGCATATTATCTCGTAGTGCTACATGGTTCACTAG
                      ____________________________________________________________
consensus AGATACGGCGGACCAAACACCGAAAAGCATATTATCTCGTAGTGCTACATGGTTCACTAG
 
. : . : . : . : . : . :
rJMSF007J08+ GGTTGTTTCAAATGTTTCTGAGTCTTTTACTGGCTATTTGGGTGTCAGCGGGAACTCTGA
rJMSF023N17+ GGTTGTTTCAAATGTTTCTGAGTCTTTTACTGGCTATTTGGGTGTCAGCGGGAACTCTGA
rJMSF022N17+ GGTTGTTTCAAATGTTTCTGAGTCTTTTACTGGCTATTTGGGTGTCAGCGGGAACTCTGA
                      ____________________________________________________________
consensus GGTTGTTTCAAATGTTTCTGAGTCTTTTACTGGCTATTTGGGTGTCAGCGGGAACTCTGA
 
. : . : . : . : . : . :
rJMSF007J08+ TGCTGACCATTACCTCAATCAGCAGTTGTGATTTCAGTGTCCGCGTAAGTTTTCCCTATG
rJMSF023N17+ TGCTGACCATTACCTCAATCAGCAGTTGTGATTTCAGTGTCCGCGTAAGTTTTCCCTATG
rJMSF022N17+ TGCTGACCATTACCTCAATCAGCAGTTGTGATTTCAGTGTCCGCGTAAGTTTTCCCTATG
                      ____________________________________________________________
consensus TGCTGACCATTACCTCAATCAGCAGTTGTGATTTCAGTGTCCGCGTAAGTTTTCCCTATG
 
. : . : . : . : . : . :
rJMSF007J08+ TTTTTCTGTCTGCGTCAATGAAGATTGAAGATATGATACATAAAATTGCGGCTGGCTTTT
rJMSF023N17+ TTTTTCTGTCTGCGTCAATGAAGATTGAAGATATGATACATAAAATTGCGGCTGGCTTTT
rJMSF022N17+ TTTTTCTGTCTGCGTCAATGAAGATTGAAGATATGATACATAAAATTGCGGCTGGCTTTT
                      ____________________________________________________________
consensus TTTTTCTGTCTGCGTCAATGAAGATTGAAGATATGATACATAAAATTGCGGCTGGCTTTT
 
. : . : . : . : . : . :
rJMSF007J08+ CTTCTTATGTGAAGTGAACAATTCCTTTTTCTTTCTTGTAACCTAGTTGCCAGAAGCTTT
rJMSF023N17+ CTTCTTATGTGAAGTGAACAATTCCTTTTTCTTTCTTGTAACCTAGTTGCCAGAAGCTTT
rJMSF022N17+ CTTCTTATGTGAAGTGAACAATTCCTTTTTCTTTCTTGTAACCTAGTTGCCAGAAGCTTT
                      ____________________________________________________________
consensus CTTCTTATGTGAAGTGAACAATTCCTTTTTCTTTCTTGTAACCTAGTTGCCAGAAGCTTT
 
. : . : . : . : . : . :
rJMSF007J08+ CATATAGTTTGTAAGGCCATAAATGAGCTTCCTTCTCAGCTCTTTGGCTTTTGTCATAAG
rJMSF023N17+ CATATAGTTTGTAAGGCCATAAATGAGCTTCCTTCTCAGCTCTTTGGCTTTTGTCATAAG
rJMSF022N17+ CATATAGTTTGTAAGGCCATAAATGAGCTTCCTTCTCAGCTCTTTGGCTTTTGTCATAAG
                      ____________________________________________________________
consensus CATATAGTTTGTAAGGCCATAAATGAGCTTCCTTCTCAGCTCTTTGGCTTTTGTCATAAG
 
. : . : . : . : . : . :
rJMSF007J08+ CAAATGCCAACCGAAGGTCCAACTTCCTACAGGATTTGTTTGCTATCAGATTAAAC
rJMSF023N17+ CAAATGCCAACCGAAGGTCC
rJMSF022N17+ CAAATGCCAACCGAAGGTCCAACTTCCTACAGGATTTGTTTGCTATCAGATTAAACAGCT
                      ____________________________________________________________
consensus CAAATGCCAACCGAAGGTCCAACTTCCTACAGGATTTGTTTGCTATCAGATTAAACAGCT