| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF007J08 | Sequence | 331 | 003558 (3) | ref|XP_009774804.1| | 8e-33 | PREDICTED: plant intracellular Ras-group-related LRR protein 9-like [Nicotiana | 763 | 001360 (3) | ref|XP_009797807.1| | 1e-67 | PREDICTED: plant intracellular Ras-group-related LRR protein 1-like [Nicotiana |
| JMSF022N17 | Sequence | 620 | 003558 (3) | ref|XP_009797807.1| | 4e-65 | PREDICTED: plant intracellular Ras-group-related LRR protein 1-like [Nicotiana | 743 | 001360 (3) | ref|XP_009797807.1| | 1e-61 | PREDICTED: plant intracellular Ras-group-related LRR protein 1-like [Nicotiana |
| JMSF023N17 | Sequence | 597 | 003558 (3) | ref|XP_009797807.1| | 2e-61 | PREDICTED: plant intracellular Ras-group-related LRR protein 1-like [Nicotiana | 672 | 001360 (3) | ref|XP_009797807.1| | 1e-57 | PREDICTED: plant intracellular Ras-group-related LRR protein 1-like [Nicotiana |
This contig is upended
. : . : . : . : . : . :
rJMSF007J08+ CTAGATGTGCATTTCAATGAGCTTCGAGGACTTCCACATTCAATTGG
rJMSF022N17+ CGAGGACTTCCACATTCAATTGG
____________________________________________________________
consensus CTAGATGTGCATTTCAATGAGCTTCGAGGACTTCCACATTCAATTGG
. : . : . : . : . : . :
rJMSF007J08+ AAAGTTGTCACGTCTTGAAATCCTCAACCTAAGCAGTAATTTCAGTGATCTTACCGAACT
rJMSF023N17+ CACGTCTTGAAATCCTCAACCTAAGCAGTAATTTCAGTGATCTTACCGAACT
rJMSF022N17+ AAAGTTGTCACGTCTTGAAATCCTCAACCTAAGCAGTAATTTCAGTGATCTTACCGAACT
____________________________________________________________
consensus AAAGTTGTCACGTCTTGAAATCCTCAACCTAAGCAGTAATTTCAGTGATCTTACCGAACT
. : . : . : . : . : . :
rJMSF007J08+ TCCTGATTCTCTTGGTGATTTGAGCAATCTCAAAGAGATTGATCTGAGCAACAATCAAAT
rJMSF023N17+ TCCTGATTCTCTTGGTGATTTGAGCAATCTCAAAGAGATTGATCTGAGCAACAATCAAAT
rJMSF022N17+ TCCTGATTCTCTTGGTGATTTGAGCAATCTCAAAGAGATTGATCTGAGCAACAATCAAAT
____________________________________________________________
consensus TCCTGATTCTCTTGGTGATTTGAGCAATCTCAAAGAGATTGATCTGAGCAACAATCAAAT
. : . : . : . : . : . :
rJMSF007J08+ CCGTGAATTGCCTTATTCAATTTCCCGACTTGACAATCTTACCAAGCTTAATGTGGATCA
rJMSF023N17+ CCGTGAATTGCCTTATTCAATTTCCCGACTTGACAATCTTACCAAGCTTAATGTGGATCA
rJMSF022N17+ CCGTGAATTGCCTTATTCAATTTCCCGACTTGACAATCTTACCAAGCTTAATGTGGATCA
____________________________________________________________
consensus CCGTGAATTGCCTTATTCAATTTCCCGACTTGACAATCTTACCAAGCTTAATGTGGATCA
. : . : . : . : . : . :
rJMSF007J08+ GAACCCTCTTGTGATTCCTCCAAAGGAGGTTGTAAATGAAGGAATCCAAGCTGTGAAAGC
rJMSF023N17+ GAACCCTCTTGTGATTCCTCCAAAGGAGGTTGTAAATGAAGGAATCCAAGCTGTGAAAGC
rJMSF022N17+ GAACCCTCTTGTGATTCCTCCAAAGGAGGTTGTAAATGAAGGAATCCAAGCTGTGAAAGC
____________________________________________________________
consensus GAACCCTCTTGTGATTCCTCCAAAGGAGGTTGTAAATGAAGGAATCCAAGCTGTGAAAGC
. : . : . : . : . : . :
rJMSF007J08+ TTATATGGTTAAAAGACGACTTGACATGTTGATGGAAGAAGAGCGGCAATACACGAAAGA
rJMSF023N17+ TTATATGGTTAAAAGACGACTTGACATGTTGATGGAAGAAGAGCGGCAATACACGAAAGA
rJMSF022N17+ TTATATGGTTAAAAGACGACTTGACATGTTGATGGAAGAAGAGCGGCAATACACGAAAGA
____________________________________________________________
consensus TTATATGGTTAAAAGACGACTTGACATGTTGATGGAAGAAGAGCGGCAATACACGAAAGA
. : . : . : . : . : . :
rJMSF007J08+ AGATACGGCGGACCAAACACCGAAAAGCATATTATCTCGTAGTGCTACATGGTTCACTAG
rJMSF023N17+ AGATACGGCGGACCAAACACCGAAAAGCATATTATCTCGTAGTGCTACATGGTTCACTAG
rJMSF022N17+ AGATACGGCGGACCAAACACCGAAAAGCATATTATCTCGTAGTGCTACATGGTTCACTAG
____________________________________________________________
consensus AGATACGGCGGACCAAACACCGAAAAGCATATTATCTCGTAGTGCTACATGGTTCACTAG
. : . : . : . : . : . :
rJMSF007J08+ GGTTGTTTCAAATGTTTCTGAGTCTTTTACTGGCTATTTGGGTGTCAGCGGGAACTCTGA
rJMSF023N17+ GGTTGTTTCAAATGTTTCTGAGTCTTTTACTGGCTATTTGGGTGTCAGCGGGAACTCTGA
rJMSF022N17+ GGTTGTTTCAAATGTTTCTGAGTCTTTTACTGGCTATTTGGGTGTCAGCGGGAACTCTGA
____________________________________________________________
consensus GGTTGTTTCAAATGTTTCTGAGTCTTTTACTGGCTATTTGGGTGTCAGCGGGAACTCTGA
. : . : . : . : . : . :
rJMSF007J08+ TGCTGACCATTACCTCAATCAGCAGTTGTGATTTCAGTGTCCGCGTAAGTTTTCCCTATG
rJMSF023N17+ TGCTGACCATTACCTCAATCAGCAGTTGTGATTTCAGTGTCCGCGTAAGTTTTCCCTATG
rJMSF022N17+ TGCTGACCATTACCTCAATCAGCAGTTGTGATTTCAGTGTCCGCGTAAGTTTTCCCTATG
____________________________________________________________
consensus TGCTGACCATTACCTCAATCAGCAGTTGTGATTTCAGTGTCCGCGTAAGTTTTCCCTATG
. : . : . : . : . : . :
rJMSF007J08+ TTTTTCTGTCTGCGTCAATGAAGATTGAAGATATGATACATAAAATTGCGGCTGGCTTTT
rJMSF023N17+ TTTTTCTGTCTGCGTCAATGAAGATTGAAGATATGATACATAAAATTGCGGCTGGCTTTT
rJMSF022N17+ TTTTTCTGTCTGCGTCAATGAAGATTGAAGATATGATACATAAAATTGCGGCTGGCTTTT
____________________________________________________________
consensus TTTTTCTGTCTGCGTCAATGAAGATTGAAGATATGATACATAAAATTGCGGCTGGCTTTT
. : . : . : . : . : . :
rJMSF007J08+ CTTCTTATGTGAAGTGAACAATTCCTTTTTCTTTCTTGTAACCTAGTTGCCAGAAGCTTT
rJMSF023N17+ CTTCTTATGTGAAGTGAACAATTCCTTTTTCTTTCTTGTAACCTAGTTGCCAGAAGCTTT
rJMSF022N17+ CTTCTTATGTGAAGTGAACAATTCCTTTTTCTTTCTTGTAACCTAGTTGCCAGAAGCTTT
____________________________________________________________
consensus CTTCTTATGTGAAGTGAACAATTCCTTTTTCTTTCTTGTAACCTAGTTGCCAGAAGCTTT
. : . : . : . : . : . :
rJMSF007J08+ CATATAGTTTGTAAGGCCATAAATGAGCTTCCTTCTCAGCTCTTTGGCTTTTGTCATAAG
rJMSF023N17+ CATATAGTTTGTAAGGCCATAAATGAGCTTCCTTCTCAGCTCTTTGGCTTTTGTCATAAG
rJMSF022N17+ CATATAGTTTGTAAGGCCATAAATGAGCTTCCTTCTCAGCTCTTTGGCTTTTGTCATAAG
____________________________________________________________
consensus CATATAGTTTGTAAGGCCATAAATGAGCTTCCTTCTCAGCTCTTTGGCTTTTGTCATAAG
. : . : . : . : . : . :
rJMSF007J08+ CAAATGCCAACCGAAGGTCCAACTTCCTACAGGATTTGTTTGCTATCAGATTAAAC
rJMSF023N17+ CAAATGCCAACCGAAGGTCC
rJMSF022N17+ CAAATGCCAACCGAAGGTCCAACTTCCTACAGGATTTGTTTGCTATCAGATTAAACAGCT
____________________________________________________________
consensus CAAATGCCAACCGAAGGTCCAACTTCCTACAGGATTTGTTTGCTATCAGATTAAACAGCT