Contig 001358:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF021K03Sequence703001358 (2)ref|XP_009628123.1|5e-05PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X2 [Nicotiana to
JMSF022G07Sequence711001358 (2)ref|XP_009628123.1|2e-05PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X2 [Nicotiana to

Alignment

This contig is upended


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rJMSF021K03+                     TCTGTGGCTGATCTGAGATGGTTGACACCACATTNGAAAGCCANTAAGA
rJMSF022G07+                   GNTCTGTGGCTGATCTGAGATGGTTGACACCACATTTGAAAGCCANTAAGA
                      ____________________________________________________________
consensus                      GNTCTGTGGCTGATCTGAGATGGTTGACACCACATTTGAAAGCCANTAAGA
 
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rJMSF021K03+          CTCTTTGGTTGTGCGNCTNTTCGTTGGAGGATANGGATGTATCTCAGTTTCCAACTGCAA
rJMSF022G07+          CTCTTTGGTTGTGNGGCTCTTCGTTGGAGGATATGGATGTATCTCAGTTTCCAACTGCAA
                      ____________________________________________________________
consensus             CTCTTTGGTTGTGCGGCTCTTCGTTGGAGGATATGGATGTATCTCAGTTTCCAACTGCAA
 
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rJMSF021K03+          TAAATCTGCGAGTGCCGAAGCTNTATAGATNACGTTTTGGTTNTGGGGATCAGCTCCCCG
rJMSF022G07+          TAAATCTGCGAGTGCNGAAGCTATATAGATNACGTTTTGGTTATGGGGATCAGCTCCCCG
                      ____________________________________________________________
consensus             TAAATCTGCGAGTGCCGAAGCTATATAGATNACGTTTTGGTTATGGGGATCAGCTCCCCG
 
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rJMSF021K03+          NTTTTATNCAANTGCTTCAAAAATTCCCTAACCTANGNGAACNGCAAATTATGGCAACTG
rJMSF022G07+          NTTTTATNCAANTGCTTCAAAAATTCCCTAACCTATGTGAACNGCAAATTATGGCAACTG
                      ____________________________________________________________
consensus             NTTTTATNCAANTGCTTCAAAAATTCCCTAACCTATGTGAACNGCAAATTATGGCAACTG
 
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rJMSF021K03+          AGGATGACAATGAACTGAACGATGAAGCATTTGNGGATCCAAATGGTCTCTTATTTATTC
rJMSF022G07+          AGGATGACAATGAACTGAACGATGAAGCATTTGAGGATCCAAATGGTCTCTTATTTATTC
                      ____________________________________________________________
consensus             AGGATGACAATGAACTGAACGATGAAGCATTTGAGGATCCAAATGGTCTCTTATTTATTC
 
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rJMSF021K03+          AAGAGCTGCAGATGCTTAACACAATTAAGATTGAAGCATTCAGTAACCAATCCGTAATGG
rJMSF022G07+          AAGAGCTGCAGATGCTTAACACAATTAAGATTGAAGCATTCAGTAACCAATCCGTAATGG
                      ____________________________________________________________
consensus             AAGAGCTGCAGATGCTTAACACAATTAAGATTGAAGCATTCAGTAACCAATCCGTAATGG
 
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rJMSF021K03+          AAATGCTTTTTATGAAAACGCTGCTCTCAAAATCCCCTGCGCTNGAGAAAGNTGTTATTG
rJMSF022G07+          AAATGCTTTTTATGAAAACGCTGCTCTCAAAATCCCCTGCGCTAGAGAAAGNTGTTATTG
                      ____________________________________________________________
consensus             AAATGCTTTTTATGAAAACGCTGCTCTCAAAATCCCCTGCGCTAGAGAAAGNTGTTATTG
 
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rJMSF021K03+          TGAANTCTNGGGGTAGTAATGCCTCCGAGGTGGTGAGAAAAATCCAAAGAAAGTTGGAAT
rJMSF022G07+          TGAAGTCTNGGGGTAGTAATGCCTCNGAGGTGGTGAGAAAAATCCAAAGAAAGTTGGAAT
                      ____________________________________________________________
consensus             TGAAGTCTNGGGGTAGTAATGCCTCCGAGGTGGTGAGAAAAATCCAAAGAAAGTTGGAAT
 
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rJMSF021K03+          GCTTCCCTCATGCATCTCCAAATGCACAGATTGTCTGCGCTGGCAATTACTATGCG    
rJMSF022G07+          GCTTCCCTCATGCATCTCCAAATGCACAGATTGTCTGCGCTGGCAATTACTATGCGGGTA
                      ____________________________________________________________
consensus             GCTTCCCTCATGCATCTCCAAATGCACAGATTGTCTGCGCTGGCAATTACTATGCGGGTA
 
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rJMSF022G07+          TGGATGAGGACTGGNTGGATACCCATGGTGTTAGGTTTTTAGATTTCGCAGTATGGTGAA
                      ____________________________________________________________
consensus             TGGATGAGGACTGGNTGGATACCCATGGTGTTAGGTTTTTAGATTTCGCAGTATGGTGAA
 
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rJMSF022G07+          TCTCCATCGGTTCTATTTGGTTGCAGCTTAGAAATGTAAGCAAAGGTTGTGTTGGAAGCT
                      ____________________________________________________________
consensus             TCTCCATCGGTTCTATTTGGTTGCAGCTTAGAAATGTAAGCAAAGGTTGTGTTGGAAGCT
 
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rJMSF022G07+          GNAATGTTTTCTAAGTTGTTCAGCATGAGGTATTNGTAATCATCAAGCATTCTGGGCAAT
                      ____________________________________________________________
consensus             GNAATGTTTTCTAAGTTGTTCAGCATGAGGTATTNGTAATCATCAAGCATTCTGGGCAAT