Contig 001356:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF024M11+                GGTGTGCAGACTCGTTTGCAAAGTGCATTTTCTATGCCAGAGGTTGCCGAGCCA
                      ____________________________________________________________
consensus                   GGTGTGCAGACTCGTTTGCAAAGTGCATTTTCTATGCCAGAGGTTGCCGAGCCA
 
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rJMSF024M11+          TACAATAGGCAACGTGCAATCCGCCATCTCGAAAAGGGAAGAGTTGTGATTTTTGGTGGT
rJMSF022C12+                                        GAAAAGGGAAGAGTTGTGATTTTTGGTGGT
                      ____________________________________________________________
consensus             TACAATAGGCAACGTGCAATCCGCCATCTCGAAAAGGGAAGAGTTGTGATTTTTGGTGGT
 
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rJMSF024M11+          ATTGGAGCTGGCACAGGAATTTCACTCTTCACTACTGATACAGCCGCAGCTCTTAGAGCT
rJMSF022C12+          ATTGGAGNTGGCACAGGAATTTCNCTCTTCACTACTGATACAGCCGCAGCTCTTAGAGCT
                      ____________________________________________________________
consensus             ATTGGAGCTGGCACAGGAATTTCACTCTTCACTACTGATACAGCCGCAGCTCTTAGAGCT
 
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rJMSF024M11+          TCTGAGATTCACGCCGAGGCCATGCTTAAAGGCACAAATGTAGAAGGTGTGTACGTTTGT
rJMSF022C12+          TCTGAGATTCNCGCCGAGGCCATGCTTAAANGCACAAATGTAGANGGTGTGTACGTTTGT
                      ____________________________________________________________
consensus             TCTGAGATTCACGCCGAGGCCATGCTTAAAGGCACAAATGTAGAAGGTGTGTACGTTTGT
 
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rJMSF024M11+          GACTCAAGAAGCAACAACTTAGCAGCTGAGCACATTTCCTACCGGGATCTTGCTTCCAAA
rJMSF022C12+          GACTCAAGAAGCAACAANTTAGCAGCTGAGCACATTTCCTCCCGGGATCTTGCTTCCAAA
                      ____________________________________________________________
consensus             GACTCAAGAAGCAACAACTTAGCAGCTGAGCACATTTCCTCCCGGGATCTTGCTTCCAAA
 
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rJMSF024M11+          GGGGCTGCTCCAATCGACATGATGGCTGTTAATTGCTGCGAGGAGAATGGAATTCCAGTG
rJMSF022C12+          GGGGCTGCTCCAATCGACATNATGGCTNTTAATTGCTGCGAGGAGAATGGAATTCCAGTG
                      ____________________________________________________________
consensus             GGGGCTGCTCCAATCGACATGATGGCTGTTAATTGCTGCGAGGAGAATGGAATTCCAGTG
 
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rJMSF024M11+          GTCATTTTCAATCTTCACGATCACGGGAACATATCAAGGGCATTAACCGGAGAGCCAGTT
rJMSF022C12+          GTCATNTTCAATCTTCACGATCACGGGAACANATCAAGGGCATTNACCGGNGAGCCAGTT
                      ____________________________________________________________
consensus             GTCATTTTCAATCTTCACGATCACGGGAACATATCAAGGGCATTAACCGGAGAGCCAGTT
 
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rJMSF024M11+          GGAACTCTGATTGATCAAACAGGAAGGGTTAGCTAGTAGTATTTGATAACGCAGTAGATT
rJMSF022C12+          GGAACTCTGATTGATCAAACAGGAAGGGTNAGCTAGTAGTATTTGATAACGCAGTAGATT
                      ____________________________________________________________
consensus             GGAACTCTGATTGATCAAACAGGAAGGGTTAGCTAGTAGTATTTGATAACGCAGTAGATT
 
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rJMSF002I21+                     TATTAGAACAGAGGAACCTATAATCGCGTCACCATCCAGATTCCNGGNT
rJMSF024M11+          ACGTTCCCAACTATTAGAACAGAGGAACCTATAATCACGTCACCATCCAGATTCCAGGTT
rJMSF022C12+          ACGTTCCCAACTATTAGNACAGAGGAACCNATAATCACGTCNCCATCCAGATTCCAGGTT
                      ____________________________________________________________
consensus             ACGTTCCCAACTATTAGAACAGAGGAACCTATAATCACGTCACCATCCAGATTCCAGGTT
 
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rJMSF002I21+          AGTTGAAGGCTCAGTCNCACAAGGAGAAGGTGCAGCTCTGTATTGTATAATAGGTACTTT
rJMSF024M11+          AGTTGAAGGCTCAGTCACACAAGGAGAAGGTGCAGCTCTGTATTGTATAATAGGTACTTT
rJMSF022C12+          AGTTGAAGGCTCAGTCACACANGGAGAAGGTGCAGCTCTGTATTGTNTAATAGGTACTTT
                      ____________________________________________________________
consensus             AGTTGAAGGCTCAGTCACACAAGGAGAAGGTGCAGCTCTGTATTGTATAATAGGTACTTT
 
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rJMSF002I21+          AAAACGATTGGTTATGTCATGTAGGCAACAATTTGAGAGTAGTCTGTCNAGTTAACT   
rJMSF024M11+          AAAACGA-TGGTTATGTCATGTAGGCAACAATTTGAGAGTAGTCTGTCGAGTTAACTTAG
rJMSF022C12+          AAAACGA-TGGTTATGTCANGTAGGCANCAATTTGAGANTAGTCTGTCGAGTTAACTTAG
                      ____________________________________________________________
consensus             AAAACGA-TGGTTATGTCATGTAGGCAACAATTTGAGAGTAGTCTGTCGAGTTAACTTAG
 
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rJMSF024M11+          ATTACTTCTAAACTGTCCCAGATCTGTAATAGTGATGAGGTCTCAACATTGATCACAATT
rJMSF022C12+          ATTACTTNTAAACTGTCCCAGATCTGTAATAGTGATGAGGTCTCAACATTGATCACCATT
                      ____________________________________________________________
consensus             ATTACTTCTAAACTGTCCCAGATCTGTAATAGTGATGAGGTCTCAACATTGATCACCATT
 
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rJMSF024M11+          TACAAATTTGTGTACTA                                           
rJMSF022C12+          TACNAATTTGTGTACTATGATGAGAGAAACTAAAATGGGTTTANTTATGGGAGAAATTTC
                      ____________________________________________________________
consensus             TACAAATTTGTGTACTATGATGAGAGAAACTAAAATGGGTTTANTTATGGGAGAAATTTC