| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF010D19 | Sequence | 269 | 006418 (2) | 803 | 001355 (4) | ref|XP_008365827.1| | 2e-21 | PREDICTED: probable choline kinase 1 [Malus domestica] | |||
| JMSF018D19 | Sequence | 536 | 001355 (4) | ref|XP_002265759.1| | 3e-40 | PREDICTED: probable choline kinase 1 [Vitis vinifera] ref|XP_010665076.1| PREDIC | |||||
| JMSF018D20 | Sequence | 512 | 006418 (2) | ref|XP_006359036.1| | 5e-38 | PREDICTED: probable choline kinase 1-like [Solanum tuberosum] | 797 | 001355 (4) | ref|XP_009336506.1| | 289 | PREDICTED: probable choline kinase 1 isoform X3 [Pyrus x bretschneideri] ref|XP_ |
| JMSF022B23 | Sequence | 646 | 024174 | ref|XP_009602682.1| | 4e-23 | PREDICTED: pollen-specific protein SF3-like [Nicotiana tomentosiformis] ref|XP_0 | 764 | 001355 (4) | ref|XP_010321447.1| | 4e-36 | PREDICTED: LIM domain-containing protein WLIM2b isoform X2 [Solanum lycopersicu |
This contig is upended
. : . : . : . : . : . :
rJMSF018D20+ CTGAGAAAATGGCT
____________________________________________________________
consensus CTGAGAAAATGGCT
. : . : . : . : . : . :
rJMSF018D20+ AGAGAAGGCGAAGCGTTTGTGCTCCACTGAACAGACAACGGAGTTCCGTTTAGGTGATCT
____________________________________________________________
consensus AGAGAAGGCGAAGCGTTTGTGCTCCACTGAACAGACAACGGAGTTCCGTTTAGGTGATCT
. : . : . : . : . : . :
rJMSF018D20+ TGAAAATGAAATCAGTTTATTAGAAAAGGAGCTGTCGAGGGAGCCACCAGAGATCGGTTT
____________________________________________________________
consensus TGAAAATGAAATCAGTTTATTAGAAAAGGAGCTGTCGAGGGAGCCACCAGAGATCGGTTT
. : . : . : . : . : . :
rJMSF018D20+ CTGTCACAATGACCTGCAGTATGGGAACATTATGATTGAGAATACGGCTAGATTGATTAC
____________________________________________________________
consensus CTGTCACAATGACCTGCAGTATGGGAACATTATGATTGAGAATACGGCTAGATTGATTAC
. : . : . : . : . : . :
rJMSF018D20+ TTTTATTGACTATGAGTATGCCACTTACAACCCAATTGCATATGACTTTGCTAATCACTT
____________________________________________________________
consensus TTTTATTGACTATGAGTATGCCACTTACAACCCAATTGCATATGACTTTGCTAATCACTT
. : . : . : . : . : . :
rJMSF018D19+ GCGAAANGGCAGCAAATTCTCACACCCATACTCCTCATGTCTTGGACTACAGTAGGTA
rJMSF018D20+ CTGCGAAATGGCAGCAAATTATCACACCCATACTCCTCATGTCTTGGACTACAGTAGGTA
____________________________________________________________
consensus CTGCGAAATGGCAGCAAATTCTCACACCCATACTCCTCATGTCTTGGACTACAGTAGGTA
. : . : . : . : . : . :
rJMSF018D19+ CCCTGGTTCAGAAGAACGCCANAGATTCATAAGTTCCTATCTGAGTTCTTCAGGCAACCA
rJMSF018D20+ CCCTGGTTCAGAAGAACGCCATAGATTCATAAGTTCCTATCTGAGTTCTTCAGGCAACCA
____________________________________________________________
consensus CCCTGGTTCAGAAGAACGCCATAGATTCATAAGTTCCTATCTGAGTTCTTCAGGCAACCA
. : . : . : . : . : . :
rJMSF018D19+ TCCCANCGATGAGGAGGTAGAGAAGCTTGCTGTTTACGCAGAAAAGTATACTNTTGCAAA
rJMSF018D20+ TCCCAGTGATGAGGAGGTAGAGAAGCTTGCTGTTTACGCAGAAAAGTATACTCTTGCAAA
rJMSF010D19+ TTACGCAGAAAAGTATACTCTTGCAAA
____________________________________________________________
consensus TCCCAGTGATGAGGAGGTAGAGAAGCTTGCTGTTTACGCAGAAAAGTATACTCTTGCAAA
. : . : . : . : . : . :
rJMSF018D19+ CCACTTGTCTTGGGGATTATGGGGAGCCATCTCGGCTAATGTGAACACTATTGNCTTCAA
rJMSF018D20+ CCACTTGTTTTGGGGATTATGGGGAGCCATCTCGGCTAATGTGAACACTATTGACTTCAA
rJMSF010D19+ CCACTTGTTTTGGGGATTATGGGGAGCCATCTCGGCTAATGTGAACACTATTGACTTCAA
____________________________________________________________
consensus CCACTTGTTTTGGGGATTATGGGGAGCCATCTCGGCTAATGTGAACACTATTGACTTCAA
. : . : . : . : . : . :
rJMSF018D19+ GTCCCTGGAATATTCAAGGCAAANGTTTGNACAATACTGGTTGAGAAAGCCCGAGCTCTT
rJMSF018D20+ GTACCTGGAATATTCAAGGCAAAGGTTTGAACAATACTGGTTGAGAAAGCCCGAGCTCTT
rJMSF010D19+ GTACCTGGAATATTCAAGGCAAAGGTTTGAACAATACTGGTTGAGAAAGCCCGAGCTCTT
____________________________________________________________
consensus GTACCTGGAATATTCAAGGCAAAGGTTTGAACAATACTGGTTGAGAAAGCCCGAGCTCTT
. : . : . : . : . : . :
rJMSF018D19+ GGGAATCTCNGGCGACGACCTTTNAACCAAGTANTCAGCANAAGGGATAGCATTNCGNTT
rJMSF018D20+ GGGAATCTCAGGCGACGACCTTTGAACCAAGTAGTCAGCAAAAGGGATAGCATTACGTTT
rJMSF010D19+ GGGAATCTCAGGCGACGACCTTTGAACCAAGTAGTCAGCAAAAGGGATAGCATTACGTTT
____________________________________________________________
consensus GGGAATCTCAGGCGACGACCTTTGAACCAAGTAGTCAGCAAAAGGGATAGCATTACGTTT
. : . : . : . : . : . :
rJMSF018D19+ CATCACACCTTNNTGNGGTCACANTACGAGNTANTAGTAGANAGATTCTGNCCCTGTTTG
rJMSF018D20+ CATCACACTTTCTTGAGGTCACACTACGAGTTACTAGTAGAGAGATTCTGGCCCTGTTTG
rJMSF010D19+ CATCACACTTTCTTGAGGTCACACTACGAGTTACTAGTAGAGAGATTCTGGCCCTGTTTG
____________________________________________________________
consensus CATCACACTTTCTTGAGGTCACACTACGAGTTACTAGTAGAGAGATTCTGGCCCTGTTTG
. : . : . : . : . : . :
rJMSF018D19+ GTAAAATGGCTGTTAGCTAATANCGNNTAGCTGTTACCTAACATGTGTTGTGTTANTTAC
rJMSF018D20+ GTAAAATGGCTGTTAGCTAATAGCGGTTAGCTGTTAGCTAA-TTGTGTTGTGTTAATTA-
rJMSF010D19+ GTAAAATGGCTGTTAGCTAATAGCGGTTAGCTGTTAGCTAA-TTGTGTTGTGTTAATTA-
____________________________________________________________
consensus GTAAAATGGCTGTTAGCTAATAGCGGTTAGCTGTTAGCTAA-TTGTGTTGTGTTAATTA-
. : . : . : . : . : . :
rJMSF018D19+ AAGGGTATAAATNGTTGATAATTGTAAAAAAGGNTTTGGTAAATTAGCT
rJMSF018D20+ AAGGGTATAAATAGTTGATAATTGTAAAAAAGGGTTTGGTAAATTAGCT
rJMSF010D19+ AAGGGTATAAATAGTTGATAATTGTAAAAAAGGGTTTGGTAAATTAGCTTTTAGCTGATA
____________________________________________________________
consensus AAGGGTATAAATAGTTGATAATTGTAAAAAAGGGTTTGGTAAATTAGCTTTTAGCTGATA
. : . : . : . : . : . :
rJMSF010D19+ GCTGTTTGATATAATTTCTTTTCTAAAAAAGCTAATTGAAAAAGTTGCTTGAAGTAGCTT
rJMSF022B23+ GTATAATTTCTTTTCTCAAAAAGCTAATTGAAAAAGGTGCTTTGAGTAGCTT
____________________________________________________________
consensus GCTGTTTGGTATAATTTCTTTTCTCAAAAAGCTAATTGAAAAAGTTGCTTTGAGTAGCTT
. : . : . : . : . : . :
rJMSF010D19+ TTTAAATTTTAGTCATTTGAAGTTGCAAAAAGCTAATTAACCAAACATTTATATTGATAT
rJMSF022B23+ TTTGAATTTTAGCATTTTGGAGTTACAAAAAGTTGATTAACCAAACACTTATATTGATTT
____________________________________________________________
consensus TTTGAATTTTAGTCTTTTGGAGTTGCAAAAAGTTGATTAACCAAACATTTATATTGATTT
. : . : . : . : . : . :
rJMSF010D19+ TTTAACTAAATCAAACAATTAATAGTG
rJMSF022B23+ TTTAACCAAATCAAACAACTAATAGTGTGGTCAAATAAGCCAAAATTGGCTGATAAGCTA
____________________________________________________________
consensus TTTAACTAAATCAAACAATTAATAGTGTGGTCAAATAAGCCAAAATTGGCTGATAAGCTA
. : . : . : . : . : . :
rJMSF022B23+ ACTATTTTACCAAACAGGGTCGAAAGCTCACTACATATGGAACTGGAACTGAATGAATCA
____________________________________________________________
consensus ACTATTTTACCAAACAGGGTCGAAAGCTCACTACATATGGAACTGGAACTGAATGAATCA
. : . : . : . : . : . :
rJMSF022B23+ AGAATAAACGAGGGTTTTTCTTTTTCGTGCTTTTTCAGGTGACAGTGGAGAACCAATCCT
____________________________________________________________
consensus AGAATAAACGAGGGTTTTTCTTTTTCGTGCTTTTTCAGGTGACAGTGGAGAACCAATCCT
. : . : . : . : . : . :
rJMSF022B23+ ACCACAAGTCGTGTTTTAAATGTTCTCATGGTGGATGCTCTTTAACTCCCTCGAACTATG
____________________________________________________________
consensus ACCACAAGTCGTGTTTTAAATGTTCTCATGGTGGATGCTCTTTAACTCCCTCGAACTATG
. : . : . : . : . : . :
rJMSF022B23+ CAGCACTGGATGGAATCTTATATTGCAAACCTCATTTCTCCCAGCTATTCAAGGAGAAAG
____________________________________________________________
consensus CAGCACTGGATGGAATCTTATATTGCAAACCTCATTTCTCCCAGCTATTCAAGGAGAAAG
. : . : . : . : . : . :
rJMSF022B23+ GTAGCTACAACCACCTAATCAAGTCAGCCTCGGTGAAGCGCCCGACAACTCCAGTTCCTG
____________________________________________________________
consensus GTAGCTACAACCACCTAATCAAGTCAGCCTCGGTGAAGCGCCCGACAACTCCAGTTCCTG
. : . : . : . : . : . :
rJMSF022B23+ AAGCTTGAAAATCTCTTCCCCTTCTTCGTTATTTCTCTACTGGCCATTTGCCTTCTTTCT
____________________________________________________________
consensus AAGCTTGAAAATCTCTTCCCCTTCTTCGTTATTTCTCTACTGGCCATTTGCCTTCTTTCT
. : . : . : . : . : . :
rJMSF022B23+ TTCTTTCTTTCTTTCGGTGTGTTTCCTCGCTCTCTTTTTACCTCTGGCCAGTAGCATAAC
____________________________________________________________
consensus TTCTTTCTTTCTTTCGGTGTGTTTCCTCGCTCTCTTTTTACCTCTGGCCAGTAGCATAAC
. : . : . : . : . : . :
rJMSF022B23+ CGACTACTTTCACAATTGAGACTCTCGGAGTGTTTAATATACCTTGTGGTGTGAGATGGG
____________________________________________________________
consensus CGACTACTTTCACAATTGAGACTCTCGGAGTGTTTAATATACCTTGTGGTGTGAGATGGG
. : . : . : . : . : . :
rJMSF022B23+ TTTTGTCCTTGATTATGACATAAGTTCTGCTGTCACTAGTCCCTTCCAATGGTTGGGGCT
____________________________________________________________
consensus TTTTGTCCTTGATTATGACATAAGTTCTGCTGTCACTAGTCCCTTCCAATGGTTGGGGCT