Contig 001354:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF005J19-                                 AACAAAAAATCAATTCTCTTTCCCTTCTCCCCAGAGCT
JMSF021N04-                        GGGGCGTATAACAAAAAATCAATTCTCTTTCCCTTCTCCCCAGAGCT
                      ____________________________________________________________
consensus                          GGGGCGTATAACAAAAAATCAATTCTCTTTCCCTTCTCCCCAGAGCT
 
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JMSF005J19-           CTCTCAGGATCTCCCATGGCGGAACCAAACCCTATCATCGGCCTTACATGGGAACCCAAG
JMSF021N04-           CTCTCAGGATCTCCCATGGCGGAACCAAACCCTATCATCGGCCTTACATGGGAACCCAAG
                      ____________________________________________________________
consensus             CTCTCAGGATCTCCCATGGCGGAACCAAACCCTATCATCGGCCTTACATGGGAACCCAAG
 
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JMSF005J19-           TTACCTGGCCTTCCAGCATCCGCCGCCAGCAAACAGAAGCCGCATCATTCCCATTCTCCT
JMSF021N04-           TTACCTGGCCTTCCAGCATCCGCCGCCAGCAAACAGAAGCCGCATCATTCCCATTCTCCT
                      ____________________________________________________________
consensus             TTACCTGGCCTTCCAGCATCCGCCGCCAGCAAACAGAAGCCGCATCATTCCCATTCTCCT
 
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JMSF005J19-           GAAACCAGCTCCGCCCTCTACAGGCCACGTTCAGAACTCATCGACGGCCTCTATGTGCCG
JMSF021N04-           GAAACCAGCTCCGCCCTCTACAGGCCACGTTCAGAACTCATCGACGGCCTCTATGTGCCG
                      ____________________________________________________________
consensus             GAAACCAGCTCCGCCCTCTACAGGCCACGTTCAGAACTCATCGACGGCCTCTATGTGCCG
 
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JMSF005J19-           CCCAGTGATCCCAAAAAGCTCAAAAAGTTACTCCGGAAAGAGGTCAAAGACACTGCCGGC
JMSF021N04-           CCCAGTGATCCCAAAAAGCTCAAAAAGTTACTCCGGAAAGAGGTCAAAGACACTGCCGGC
rJMSF021N04+                                            GGAANGAGGTCAAAGACACTGCCGGC
                      ____________________________________________________________
consensus             CCCAGTGATCCCAAAAAGCTCAAAAAGTTACTCCGGAAAGAGGTCAAAGACACTGCCGGC
 
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JMSF005J19-           AAGAATTGGTTTGACATGCCTGCCCCGACCATTACTCCGGAGC                 
JMSF021N04-           AAGAATTGGTTTGACATGCCTGCCCCGACCATTACTCCGGAGCTCAAGAAGGATCTCCAA
rJMSF021N04+          AAGAATTGGTTTGACATGCCTGCCCCGACCATTACTCCGGAGCTCAAGAAGGATCTCCAA
                      ____________________________________________________________
consensus             AAGAATTGGTTTGACATGCCTGCCCCGACCATTACTCCGGAGCTCAAGAAGGATCTCCAA
 
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JMSF021N04-           CTCTTGAAGATGAGGGATGCTTTTGACCCCAAGAGACACTATAAGAAAGGTGATTCAAAA
rJMSF021N04+          CTCTTGAAGATGAGGGATGCTTTTGACCCCAAGAGACACTATAAGAAAGGTGATTCAAAA
                      ____________________________________________________________
consensus             CTCTTGAAGATGAGGGATGCTTTTGACCCCAAGAGACACTATAAGAAAGGTGATTCAAAA
 
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JMSF021N04-           TCAAAGACACTTCCCAAGTATTTCCAGGTGGGCGTTGTGATCGAACCAGCTTCAGAATTC
rJMSF021N04+          TCAAAGACACTTCCCAAGTATTTCCAGGTGGGCGTTGTGATCGAACCAGCTTCAGAATTC
                      ____________________________________________________________
consensus             TCAAAGACACTTCCCAAGTATTTCCAGGTGGGCGTTGTGATCGAACCAGCTTCAGAATTC
 
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JMSF021N04-           TATTCTAGTAGACTTTCTAAGAAGGAGAGAAAGGCAACTCTTGCAGAAGAACTGCTTTCT
rJMSF005H17+             TCTAGTAGACTTTCTAAGAAGGAGAGAAAGGCAACTCTTGCAGAAGAACTGCTTTCT
rJMSF021N04+          TATTCTAGTAGACTTTCTAAGAAGGAGAGAAAGGCAACTCTTGCAGAAGAACTGCTTTCT
                      ____________________________________________________________
consensus             TATTCTAGTAGACTTTCTAAGAAGGAGAGAAAGGCAACTCTTGCAGAAGAACTGCTTTCT
 
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JMSF021N04-           GATACAAACCTTGTCGAATATAGGAAACGCAAGGTCCGGGAGATTGAAGAACAAAAGCGG
rJMSF005H17+          GATACAAACCTTGTCGAATATAGGAAACGCAAGGTCCGGGAGATTGAAGAACAAAAGCGG
rJMSF021N04+          GATACAAACCTTGTCGAATATAGGAAACGCAAGGTCCGGGAGATTGAAGAACAAAAGCGG
                      ____________________________________________________________
consensus             GATACAAACCTTGTCGAATATAGGAAACGCAAGGTCCGGGAGATTGAAGAACAAAAGCGG
 
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JMSF021N04-           CCAGGTGGAGTAGATAAGTGGAAGATAAGAGGCCAACAGTCCAGGA              
rJMSF005H17+          CCAGGTGGAGTAGATAAGTGGAAGATAAGAGGCCANCAGTCCAGGAAACGCGCAAAGCAT
rJMSF021N04+          CCAGGTGGAGTAGATAAGTGGAAGATAAGAGGCCAACAGTCCAGGAAACGCGCAAAGCAT
                      ____________________________________________________________
consensus             CCAGGTGGAGTAGATAAGTGGAAGATAAGAGGCCAACAGTCCAGGAAACGCGCAAAGCAT
 
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rJMSF005H17+          AGAAGACACTGATTGTTACACCCATTGCAAAGCAAAACATCAATGTTCTTTGATTCAGGC
rJMSF021N04+          AGAAGACACTGATTGTTACACCCATTGCAAAGCAAAACATCAATGTTCTTTGATTCAGGC
                      ____________________________________________________________
consensus             AGAAGACACTGATTGTTACACCCATTGCAAAGCAAAACATCAATGTTCTTTGATTCAGGC
 
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rJMSF005H17+          CCCTCNAATTGTCAAACCTGCACCTGAATCCTCATAGCTTTGATAGATNNGGGAGGAATC
rJMSF021N04+          CCCTCGAATTGTCAAACCTGCA-CTGAATCCTCATAGCTTTGATAGATATGGGAGGAATC
                      ____________________________________________________________
consensus             CCCTCGAATTGTCAAACCTGCACCTGAATCCTCATAGCTTTGATAGATATGGGAGGAATC
 
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rJMSF005H17+          TCTAGCGCACCATAGNGGCTTATGATATATGTATTTGCCTTCACATGAAACAGTAAAAAA
rJMSF021N04+          TCTAGCGCACCATAGTGGCTTATGATATATGTATTTGCCTTCACATGAAACAGTAAAAAA
                      ____________________________________________________________
consensus             TCTAGCGCACCATAGTGGCTTATGATATATGTATTTGCCTTCACATGAAACAGTAAAAAA
 
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rJMSF005H17+          T                                                           
rJMSF021N04+          TTTTGTGTACTAATGCTACATTTTTCTTTAAAAAAAAGCTTTGTAGTCCATTTTGTAAGT
                      ____________________________________________________________
consensus             TTTTGTGTACTAATGCTACATTTTTCTTTAAAAAAAAGCTTTGTAGTCCATTTTGTAAGT
 
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rJMSF021N04+          TCGGTGCTTTTCGTCTTTTCATACTAGGTACCGACAACTTTACAATGTTTACATACCAAG
                      ____________________________________________________________
consensus             TCGGTGCTTTTCGTCTTTTCATACTAGGTACCGACAACTTTACAATGTTTACATACCAAG
 
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rJMSF021N04+          TTGTAATAGATATATCTTGCATGATTGTATCGAGTATCGAGTATGATACTTGATTGTAAC
                      ____________________________________________________________
consensus             TTGTAATAGATATATCTTGCATGATTGTATCGAGTATCGAGTATGATACTTGATTGTAAC