Contig 001351:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012I02Sequence504002205 (4)emb|CBI19895.3|1e-34unnamed protein product [Vitis vinifera]758001351 (3)ref|XP_009766393.1|5e-23PREDICTED: receptor protein kinase CLAVATA1 [Nicotiana sylvestris]
JMSF013P09Sequence315002205 (4)510001351 (3)gb|ACL54651.1|2e-06unknown [Zea mays]
JMSF020N19Sequence705002205 (4)emb|CBI19895.3|2e-63unnamed protein product [Vitis vinifera]788001351 (3)ref|XP_009766393.1|1e-20PREDICTED: receptor protein kinase CLAVATA1 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF012I02+                                                  CCGGTGAAATTCCAAATGAA
                      ____________________________________________________________
consensus                                                     CCGGTGAAATTCCAAATGAA
 
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rJMFF012I02+          ATCTCAGAGCTTCACATATTGAACGCACTCAACTTATCCGGCAACGCGCTTTCAGGCGCA
rJMSF020N19+             TCAGAGCTTCACATATTGAACGCACTCAACTTATCCGGCAACGCGCTTTCAGGCGCA
                      ____________________________________________________________
consensus             ATCTCAGAGCTTCACATATTGAACGCACTCAACTTATCCGGCAACGCGCTTTCAGGCGCA
 
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rJMFF012I02+          ATTCCAGCTGAACTAGGGCTAATGAATAGCTTAAGCGACTTGGATCTTTCCGACAATGAT
rJMSF020N19+          ATTCCAGCTGAACTAGGGCTAATGAATAGCTTAAGCGACTTGGATCTTTCCGACAATGAT
                      ____________________________________________________________
consensus             ATTCCAGCTGAACTAGGGCTAATGAATAGCTTAAGCGACTTGGATCTTTCCGACAATGAT
 
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rJMFF012I02+          TTCTCCGGCCGGAGACCCGCCAACGGGCAGCTAAGGATCTTCGGCGATCGGTCTTTCACC
rJMSF020N19+          TTCTCCGGCCGGAGACCCGCCAACGGGCAGCTAAGGATCTTCGGCGATCGGTCTTTCACC
                      ____________________________________________________________
consensus             TTCTCCGGCCGGAGACCCGCCAACGGGCAGCTAAGGATCTTCGGCGATCGGTCTTTCACC
 
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rJMFF012I02+          GGAAATCCAAGCCTCTGTTCACCTCACGCCCGATATTGTCCTTCAGCTTCATCTTCCTCC
rJMSF013P09+                                                            ATCTTCCTCC
rJMSF020N19+          GGAAATCCAAGCCTCTGTTCACCTCACGCCCGATATTGTCCTTCAGCTTCATCTTCCTCC
                      ____________________________________________________________
consensus             GGAAATCCAAGCCTCTGTTCACCTCACGCCCGATATTGTCCTTCAGCTTCATCTTCCTCC
 
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rJMFF012I02+          GCCGCCGGCGATAACCATTCCCATGTTTCCACCCCGGCGAAGATATTGATCACGATAATA
rJMSF013P09+          GCCGCCGNCGATAACCATTCCCATGTTTCCACCCCGGCGAAGATATTGATCACGATAATA
rJMSF020N19+          GCCGCCGGCGATAACCATTCCCATGTTTCCACCCCGGCGAAGATATTGATCACGATAATA
                      ____________________________________________________________
consensus             GCCGCCGGCGATAACCATTCCCATGTTTCCACCCCGGCGAAGATATTGATCACGATAATA
 
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rJMFF012I02+          ATCCTGGTCACGGTTGCACTGCTGTTGGCTGTCACGTGCGTGATAACCCGGAAACAATCA
rJMSF013P09+          ATCCTGGTCACGGTTGCACTGCTGTTGGCTGTCACGTGCGTGATAACCCGGAAACAATCA
rJMSF020N19+          ATCCTGGTCACGGTTGCACTGCTGTTGGCTGTCACGTGCGTGATAACCCGGAAACAATCA
                      ____________________________________________________________
consensus             ATCCTGGTCACGGTTGCACTGCTGTTGGCTGTCACGTGCGTGATAACCCGGAAACAATCA
 
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rJMFF012I02+          AAAGCGTGGAAACTCACGGCGTTCCAGAGACGCGACTTCAGAGTAGACGACGATCCAGAC
rJMSF013P09+          AAAGCGTGGAAACTCACGGCGTTCCAGAGACGCGACTTCAGAGTAGACGACGATCCAGAC
rJMSF020N19+          AAAGCGTGGAAACTCACGGCGTTCCAGAGACGCGACTTCAGAGTAGACGACGATCCAGAC
                      ____________________________________________________________
consensus             AAAGCGTGGAAACTCACGGCGTTCCAGAGACGCGACTTCAGAGTAGACGACGATCCAGAC
 
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rJMFF012I02+          TGCTTAAAGGAGGAGAACATCATCGACAAAAAGGCGCCGGGATTTTCCACCGGAGATCCA
rJMSF013P09+          TGCTTAAAGGAGGAGAACATCATCGACAAAAAGGCGCCGGGATTTTCCACCGGAGATCCA
rJMSF020N19+          TGCTTAAAGGAGGAGAACATCATCGACAAAAAGGCGCCGGGATTTTCCACCGGAGATCCA
                      ____________________________________________________________
consensus             TGCTTAAAGGAGGAGAACATCATCGACAAAAAGGCGCCGGGATTTTCCACCGGAGATCCA
 
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rJMFF012I02+          TGCCCAACGAAAATTAATAATTAGTAATTCATTCCAGATCAAATGCTCTCGGGAAGGCTG
rJMSF013P09+          TGCCCAACGAAAATTAATAATTAGTAATTCATTCCAGATCAAATGCTCTCGGGAAGGCTG
rJMSF020N19+          TGCCCAACGAAAATTAATAATTAGTAATTCATTCCAGATCAAATGCTCTCGGGAAGGCTG
                      ____________________________________________________________
consensus             TGCCCAACGAAAATTAATAATTAGTAATTCATTCCAGATCAAATGCTCTCGGGAAGGCTG
 
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rJMFF012I02+          AAGAATATGCATAACAACACAATGGCTCAACAATGTGAATAAATAACCATGTGTGTTCAA
rJMSF013P09+          AAGAATATGCATAACAACACAATGGCTCAACAATGTGAATAAATAACCATGTGTGTTCAA
rJMSF020N19+          AAGAATATGCATAACAACACAATGGCTCAACAATGTGAATAAATAACCATGTGTGTTCAA
                      ____________________________________________________________
consensus             AAGAATATGCATAACAACACAATGGCTCAACAATGTGAATAAATAACCATGTGTGTTCAA
 
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rJMFF012I02+          GAGACAAGAATACACAACAATGTGGTCTGGAGGTTTGTGCACCGGAAGGTATATTAGGGT
rJMSF013P09+          GAGACAAGAATACACAACAATGTGGTCTGGAGGTTTGTGCACCGGAAGGTATATTAGGGT
rJMSF020N19+          GAGACAAGAATACACAACAATGTGGTCTGGAGGTTTGTGCACCGGAAGGTATATTAGGGT
                      ____________________________________________________________
consensus             GAGACAAGAATACACAACAATGTGGTCTGGAGGTTTGTGCACCGGAAGGTATATTAGGGT
 
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rJMFF012I02+          ACTCTGAAA-GGTACAATATTGTGCTCGGAGACAAAA-CATTGTGTTATGCAATAAGGGA
rJMSF013P09+          ACTCTGAAAGGGTACAATATTGTGCTCGGAGACAAAACCATTGTGTTATGCAATAAGGGA
rJMSF020N19+          ACTCTGAAA-GGTACAATATTGTGCTCGGAGACAAAA-CATTGTGTTATGCAATAAGGGA
                      ____________________________________________________________
consensus             ACTCTGAAA-GGTACAATATTGTGCTCGGAGACAAAA-CATTGTGTTATGCAATAAGGGA
 
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rJMFF012I02+          AAACATGCACCAAAAAAATA                                        
rJMSF013P09+          AAACATGCACCAAAAAAATA                                        
rJMSF020N19+          AAACATGCACCAAAAAAATAATAATAATAACTTATGTAAATAAAATTATAATAAAACCGA
                      ____________________________________________________________
consensus             AAACATGCACCAAAAAAATAATAATAATAACTTATGTAAATAAAATTATAATAAAACCGA