Contig 001349:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020E04Sequence714000759 (3)744001349 (2)ref|XP_009147282.1|2e-12PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
JMSF025D16Sequence676000759 (3)740001349 (2)ref|XP_009147282.1|3e-12PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]

Alignment

This contig is upended


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rJMSF025D16+                                                                CATGAA
rJMSF020E04+                                              CCTCTGGTAATCGAAAACCATGAA
                      ____________________________________________________________
consensus                                                 CCTCTGGTAATCGAAAACCATGAA
 
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rJMSF025D16+          CAACGTGTAACCTTTGCGGTCACAATGTGGTGGCTGTGGAAGTGGAGAAATGATTTGGTA
rJMSF020E04+          CNACGTGTAACCTTTGCGGTCACAATGTGGTGGCTGTGGAAGTGGAGAAATGATTTGGTA
                      ____________________________________________________________
consensus             CAACGTGTAACCTTTGCGGTCACAATGTGGTGGCTGTGGAAGTGGAGAAATGATTTGGTA
 
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rJMSF025D16+          TTTTCAGGTACTAATATAAACCTCGCTGCAAGAATCAAATGGATTAGAGATCAAGTGGAG
rJMSF020E04+          TTTTCAGGTACTAATATAAACCTCGCTGCAAGAATCAAATGGATTAGAGATCAAGTGGAG
                      ____________________________________________________________
consensus             TTTTCAGGTACTAATATAAACCTCGCTGCAAGAATCAAATGGATTAGAGATCAAGTGGAG
 
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rJMSF025D16+          GAAATAAATATATCGTTCTCAAAGGCTAAGGGCCTAATAGCTCCGATAGAGAGTATTTGT
rJMSF020E04+          GAAATAAATATATCGTTCTCAAAGGCTAAGGGCCTAATAGCTCCGATAGAGAGTATTTGT
                      ____________________________________________________________
consensus             GAAATAAATATATCGTTCTCAAAGGCTAAGGGCCTAATAGCTCCGATAGAGAGTATTTGT
 
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rJMSF025D16+          TGGAGACAATTGAAGTGGATCAGGCCACAAGTTGGTTGGGTTAAGGCAAATATTGATGGC
rJMSF020E04+          TGGAGACAATTGAAGTGGATCAGGCCACAAGTTGGTTGGGTTAAGGCAAATATTGATGGC
                      ____________________________________________________________
consensus             TGGAGACAATTGAAGTGGATCAGGCCACAAGTTGGTTGGGTTAAGGCAAATATTGATGGC
 
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rJMSF025D16+          AGTTCCATCCCAAGCAATAGCATCGCCAGGTGCGGTGGTTTCATTAGAGATGATCAGGGT
rJMSF020E04+          AGTTCCATCCCAAGCAATAGCATCGCCAGGTGCGGTGGTTTCATTAGAGATGATCAGGGT
                      ____________________________________________________________
consensus             AGTTCCATCCCAAGCAATAGCATCGCCAGGTGCGGTGGTTTCATTAGAGATGATCAGGGT
 
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rJMSF025D16+          TGCTAGTTGAAAGGTTTTATGCACAACATTGGGCTTAACCAAAGGGTATCTAGTTAGCCA
rJMSF020E04+          TGCTAGTTGAAAGGTTTTATGCACAACATTGGGCTTAACCAAAGGGTATCTAGTTAGCCA
                      ____________________________________________________________
consensus             TGCTAGTTGAAAGGTTTTATGCACAACATTGGGCTTAACCAAAGGGTATCTAGTTAGCCA
 
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rJMSF025D16+          AGACTATGGGGCTTAACCACATGATTTTTTAAAACAGATTCCTTAGATATTGTGGAGGGT
rJMSF020E04+          AGACTATGGGGCTTAACCACATGATTTTTTAAAACAGATTCCTTAGATATTGTGGAGGGT
                      ____________________________________________________________
consensus             AGACTATGGGGCTTAACCACATGATTTTTTAAAACAGATTCCTTAGATATTGTGGAGGGT
 
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rJMSF025D16+          TTTTGCAAGGGCAAATCCTTTGAGAACCTGTTGATAACATCTTGGCGGCTTGCAGGAAAG
rJMSF020E04+          TTTTGCAAGGGCAAATCCTTTGAGAACCTGTTGATAACATCTTGGCGGCTTGCAGGAAAG
                      ____________________________________________________________
consensus             TTTTGCAAGGGCAAATCCTTTGAGAACCTGTTGATAACATCTTGGCGGCTTGCAGGAAAG
 
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rJMSF025D16+          AAATCAGGAGCATCCCTGTCTGGAAGGTTCTACACGCGGTTCGTGAACAGAATAGAGCTG
rJMSF020E04+          AAATCAGGAGCATCCCTGTCTGGAAGGTTCTACACGCGGTTCGTGAACAGAATAGAGCTG
                      ____________________________________________________________
consensus             AAATCAGGAGCATCCCTGTCTGGAAGGTTCTACACGCGGTTCGTGAACAGAATAGAGCTG
 
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rJMSF025D16+          CTGACCTCTTGGCGCACATGGCAACAACTATTAGCAGGGGCACATCTATACTCCATGATC
rJMSF020E04+          CTGACCTCTTGGCGCACATGGCAACAACTATTAGCAGGGGCACATCTATACTCCATGATC
                      ____________________________________________________________
consensus             CTGACCTCTTGGCGCACATGGCAACAACTATTAGCAGGGGCACATCTATACTCCATGATC
 
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rJMSF025D16+          CTTGTGATGAACTTCTCGATGTCTTAAATGATGATTGTTTGGGCGTCCTTGCGTGGCGTC
rJMSF020E04+          CTTGTGATGAACTTCTCGATGTCTTAAATGATGATTGTTTGGGCGTCCTTGCGTGGCGTC
                      ____________________________________________________________
consensus             CTTGTGATGAACTTCTCGATGTCTTAAATGATGATTGTTTGGGCGTCCTTGCGTGGCGTC
 
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rJMSF025D16+          ATATTAGTTGTATTAGTCTGTGGTTTCAATTAACTATATTGAAACCTAAATATTCAATA 
rJMSF020E04+          ATATTAGTTGTATTAGTCTGTGGTTTCAATTAACTATATTGAAACCTAAATATTCAATAA
                      ____________________________________________________________
consensus             ATATTAGTTGTATTAGTCTGTGGTTTCAATTAACTATATTGAAACCTAAATATTCAATAA