clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF001J05 | Sequence | 144 | 001348 (5) | ||||||||
JMFF043A14 | Sequence | 646 | 011655 (4) | ref|XP_004239833.1| | 1e-126 | PREDICTED: glutamate decarboxylase-like [Solanum lycopersicum] gb|AHI13795.1| gl | 355 | 001348 (5) | emb|CDP01683.1| | 7e-04 | unnamed protein product [Coffea canephora] |
JMFF050M10 | Sequence | 561 | 011655 (4) | ref|XP_004239833.1| | 5e-102 | PREDICTED: glutamate decarboxylase-like [Solanum lycopersicum] gb|AHI13795.1| gl | 289 | 001348 (5) | |||
JMFN035H12 | Sequence | 472 | 001348 (5) | emb|CDP01683.1| | 8e-45 | unnamed protein product [Coffea canephora] | |||||
JMSF020B16 | Sequence | 696 | 011655 (4) | ref|XP_004239833.1| | 6e-145 | PREDICTED: glutamate decarboxylase-like [Solanum lycopersicum] gb|AHI13795.1| gl | 728 | 001348 (5) | emb|CDP01683.1| | 5e-48 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF020B16+ TCTCTCAA
____________________________________________________________
consensus TCTCTCAA
. : . : . : . : . : . :
JMFN035H12- CACGACGAGTTCGAGATCTCGGATATGCTCCGGCGTTTCGGGTGGAT
rJMSF020B16+ GGACCACAGTCGCCACGACGAGTTCGAGATCTCGGATATGCTCCGGCGTTTCGGGTGGAT
____________________________________________________________
consensus GGACCACAGTCGCCACGACGAGTTCGAGATCTCGGATATGCTCCGGCGTTTCGGGTGGAT
. : . : . : . : . : . :
JMFN035H12- CGTGCCGGCGTACACCATGCCGGCGGACGCGCAGCACGTGACGGTGCTCCGGGTGGTGAT
rJMSF020B16+ CGTGCCGGCGTACACCATGCCGGCGGACGCGCAGCACGTGACGGTGCTCCGGGTGGTGAT
____________________________________________________________
consensus CGTGCCGGCGTACACCATGCCGGCGGACGCGCAGCACGTGACGGTGCTCCGGGTGGTGAT
. : . : . : . : . : . :
JMFN035H12- CAGGGAAGACTTCTCGAGGACGTTGGCGGAGCGGCTTGTCATAGACATCGAGAGGGTTCT
rJMSF020B16+ CAGGGAAGACTTCTCGAGGACGTTGGCGGAGCGGCTTGTCATAGACATCGAGAGGGTTCT
____________________________________________________________
consensus CAGGGAAGACTTCTCGAGGACGTTGGCGGAGCGGCTTGTCATAGACATCGAGAGGGTTCT
. : . : . : . : . : . :
JMFN035H12- CCACGACCTCGACGGCCTTCCGGCCAAAGTGGGTTCCAAGTATGCGACGGAAACGGAGGT
rJMSF020B16+ CCACGACCTCGACGGCCTTCCGGCCAAAGTGGGTTCCAAGTATGCGACGGAAACGGAGGT
____________________________________________________________
consensus CCACGACCTCGACGGCCTTCCGGCCAAAGTGGGTTCCAAGTATGCGACGGAAACGGAGGT
. : . : . : . : . : . :
JMFN035H12- GGTTTCGGTGGCCAATGGCGGCGTGGTGGTCCGCAAGAAGAGTGAACGGGAAGTGACGCT
rJMFF050M10+ AGAAGAGTGAACGGGAAGTGACGCT
rJMFF043A14+ GGCGGCGTGGTGGTCCGCAAGAAGAGTGAACGGGAAGTGACGCT
rJMSF020B16+ GGTTTCGGTGGCCAATGGCGGCGTGGTGGTCCGCAAGAAGAGTGAACGGGAAGTGACGCT
____________________________________________________________
consensus GGTTTCGGTGGCCAATGGCGGCGTGGTGGTCCGCAAGAAGAGTGAACGGGAAGTGACGCT
. : . : . : . : . : . :
JMFN035H12- GGAGGTGACCACGGCGTGGAAGAAGTTCGTCGCCGATAGGAAAATGAAAAATGGGGTCTG
rJMFF050M10+ GGAGGTGACCCCGGCGTGGAAGAAGTTCGTCGCCGATAGGAAAATGAAAAATGGGGTTTG
rJMFF043A14+ GGAGGTGACCCCGGCGTGGAAGAAGTTTGTCGCCGATAGGAAAATGAAAAATGGGGTTTG
rJMFF001J05+ CGGCGTGGAAGAAGNTCGTCNCCGATANGAAAATGAAAAATGGGGTCTG
rJMSF020B16+ GGAGGTGACCACGGCGTGGAAGAAGTTCGTCGCCGATAGGAAAATGAAAAATGGGGTCTG
____________________________________________________________
consensus GGAGGTGACCACGGCGTGGAAGAAGTTCGTCGCCGATAGGAAAATGAAAAATGGGGTCTG
. : . : . : . : . : . :
JMFN035H12- CTAACTGCTAAGAGCCTAAGACTTAAGACGACTAGAGGCCGCAGAATGGCCAATATCGCT
rJMFF050M10+ CTAACTGCTAAGAGCCTAAGACTTAAGACGACTAGAGGCCGCAGAATGGCCAATATCGCT
rJMFF043A14+ CTAACTGCTAAGAGCCTAAGACTTAAGACGACTAGAGGCCGCAGAATGGCCAATATCGCT
rJMFF001J05+ NTAACTGCTAAGAGCCTAAGACTTAAGACGACTAGAGGCCGCAGAATGNCCAATATCGCT
rJMSF020B16+ CTAACTGCTAAGAGCCTAAGACTTAAGACGACTAGAGGCCGCAGAATGGCCAATATCGCT
____________________________________________________________
consensus CTAACTGCTAAGAGCCTAAGACTTAAGACGACTAGAGGCCGCAGAATGGCCAATATCGCT
. : . : . : . : . : . :
JMFN035H12- GTTTTTTGTTTTTACATGAAGATTGGTCGTTCAGTTTGTCCCCTATTTATTTTATGTGTA
rJMFF050M10+ GTTTTTTGTTTTTACATGAAGATTGGTCGTTGAGTTTGTCCCCTATTTATTTTATGTGTA
rJMFF043A14+ GTTTTTTGTTTTTACATGAAGATTGGTCGTTGAGTTTGTCCCCTATTTATTTTATGTGTA
rJMFF001J05+ GTTTTTTNTNTTTACATGAAGANNGGTCGTTGAG
rJMSF020B16+ GTTTTTTGTTTTTACATGAAGATTGGTCGTTGAGTTTGTCCACTATTTATTTTATGTGTA
____________________________________________________________
consensus GTTTTTTGTTTTTACATGAAGATTGGTCGTTGAGTTTGTCCCCTATTTATTTTATGTGTA
. : . : . : . : . : . :
JMFN035H12- CTTGC
rJMFF050M10+ CTTGCACTCTTGCTCGTGTGTTATTAAGGCTCTACTTATGTATGCAAAGCCTTTAATAAT
rJMFF043A14+ CTTGCACTCTTGCTCGTGTGTTATTAAGGCTCTACTTATGTATGCAAAGCCTTTAATAAT
rJMSF020B16+ CTTGCACTCTTGCTCGTGTGTTATTAAGGCTCTACTTATGTATGCAAAGCCTTTAATAAT
____________________________________________________________
consensus CTTGCACTCTTGCTCGTGTGTTATTAAGGCTCTACTTATGTATGCAAAGCCTTTAATAAT
. : . : . : . : . : . :
rJMFF050M10+ ATACTCCGTATAGTAATAAA
rJMFF043A14+ ATACTCCGTATAGTAATAAATGGACCCCAGCCTATGCTTATCATTAAGAGTGCGATTTAC
rJMSF020B16+ ATACTCCGTATAGTAATAAATGGACACCAGCCTATGCTTATCATTAAGAGTGCGATTTAC
____________________________________________________________
consensus ATACTCCGTATAGTAATAAATGGACCCCAGCCTATGCTTATCATTAAGAGTGCGATTTAC
. : . : . : . : . : . :
rJMFF043A14+ TTAATACATAC
rJMSF020B16+ TTAATACATACACTCGAGGGTGTGATTATGAATTTCCCTTGTTTCTTAAAAAAGAGTGTA
____________________________________________________________
consensus TTAATACATACACTCGAGGGTGTGATTATGAATTTCCCTTGTTTCTTAAAAAAGAGTGTA
. : . : . : . : . : . :
rJMSF020B16+ ATGTTTTGGTCATATGTGTGACTTGCCAATTTAGAGATGTTATGTAAAAAATAAGAAGTT
____________________________________________________________
consensus ATGTTTTGGTCATATGTGTGACTTGCCAATTTAGAGATGTTATGTAAAAAATAAGAAGTT