Contig 001348:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001J05Sequence144001348 (5)
JMFF043A14Sequence646011655 (4)ref|XP_004239833.1|1e-126PREDICTED: glutamate decarboxylase-like [Solanum lycopersicum] gb|AHI13795.1| gl355001348 (5)emb|CDP01683.1|7e-04unnamed protein product [Coffea canephora]
JMFF050M10Sequence561011655 (4)ref|XP_004239833.1|5e-102PREDICTED: glutamate decarboxylase-like [Solanum lycopersicum] gb|AHI13795.1| gl289001348 (5)
JMFN035H12Sequence472001348 (5)emb|CDP01683.1|8e-45unnamed protein product [Coffea canephora]
JMSF020B16Sequence696011655 (4)ref|XP_004239833.1|6e-145PREDICTED: glutamate decarboxylase-like [Solanum lycopersicum] gb|AHI13795.1| gl728001348 (5)emb|CDP01683.1|5e-48unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF020B16+ TCTCTCAA
                      ____________________________________________________________
consensus TCTCTCAA
 
. : . : . : . : . : . :
JMFN035H12- CACGACGAGTTCGAGATCTCGGATATGCTCCGGCGTTTCGGGTGGAT
rJMSF020B16+ GGACCACAGTCGCCACGACGAGTTCGAGATCTCGGATATGCTCCGGCGTTTCGGGTGGAT
                      ____________________________________________________________
consensus GGACCACAGTCGCCACGACGAGTTCGAGATCTCGGATATGCTCCGGCGTTTCGGGTGGAT
 
. : . : . : . : . : . :
JMFN035H12- CGTGCCGGCGTACACCATGCCGGCGGACGCGCAGCACGTGACGGTGCTCCGGGTGGTGAT
rJMSF020B16+ CGTGCCGGCGTACACCATGCCGGCGGACGCGCAGCACGTGACGGTGCTCCGGGTGGTGAT
                      ____________________________________________________________
consensus CGTGCCGGCGTACACCATGCCGGCGGACGCGCAGCACGTGACGGTGCTCCGGGTGGTGAT
 
. : . : . : . : . : . :
JMFN035H12- CAGGGAAGACTTCTCGAGGACGTTGGCGGAGCGGCTTGTCATAGACATCGAGAGGGTTCT
rJMSF020B16+ CAGGGAAGACTTCTCGAGGACGTTGGCGGAGCGGCTTGTCATAGACATCGAGAGGGTTCT
                      ____________________________________________________________
consensus CAGGGAAGACTTCTCGAGGACGTTGGCGGAGCGGCTTGTCATAGACATCGAGAGGGTTCT
 
. : . : . : . : . : . :
JMFN035H12- CCACGACCTCGACGGCCTTCCGGCCAAAGTGGGTTCCAAGTATGCGACGGAAACGGAGGT
rJMSF020B16+ CCACGACCTCGACGGCCTTCCGGCCAAAGTGGGTTCCAAGTATGCGACGGAAACGGAGGT
                      ____________________________________________________________
consensus CCACGACCTCGACGGCCTTCCGGCCAAAGTGGGTTCCAAGTATGCGACGGAAACGGAGGT
 
. : . : . : . : . : . :
JMFN035H12- GGTTTCGGTGGCCAATGGCGGCGTGGTGGTCCGCAAGAAGAGTGAACGGGAAGTGACGCT
rJMFF050M10+ AGAAGAGTGAACGGGAAGTGACGCT
rJMFF043A14+ GGCGGCGTGGTGGTCCGCAAGAAGAGTGAACGGGAAGTGACGCT
rJMSF020B16+ GGTTTCGGTGGCCAATGGCGGCGTGGTGGTCCGCAAGAAGAGTGAACGGGAAGTGACGCT
                      ____________________________________________________________
consensus GGTTTCGGTGGCCAATGGCGGCGTGGTGGTCCGCAAGAAGAGTGAACGGGAAGTGACGCT
 
. : . : . : . : . : . :
JMFN035H12- GGAGGTGACCACGGCGTGGAAGAAGTTCGTCGCCGATAGGAAAATGAAAAATGGGGTCTG
rJMFF050M10+ GGAGGTGACCCCGGCGTGGAAGAAGTTCGTCGCCGATAGGAAAATGAAAAATGGGGTTTG
rJMFF043A14+ GGAGGTGACCCCGGCGTGGAAGAAGTTTGTCGCCGATAGGAAAATGAAAAATGGGGTTTG
rJMFF001J05+ CGGCGTGGAAGAAGNTCGTCNCCGATANGAAAATGAAAAATGGGGTCTG
rJMSF020B16+ GGAGGTGACCACGGCGTGGAAGAAGTTCGTCGCCGATAGGAAAATGAAAAATGGGGTCTG
                      ____________________________________________________________
consensus GGAGGTGACCACGGCGTGGAAGAAGTTCGTCGCCGATAGGAAAATGAAAAATGGGGTCTG
 
. : . : . : . : . : . :
JMFN035H12- CTAACTGCTAAGAGCCTAAGACTTAAGACGACTAGAGGCCGCAGAATGGCCAATATCGCT
rJMFF050M10+ CTAACTGCTAAGAGCCTAAGACTTAAGACGACTAGAGGCCGCAGAATGGCCAATATCGCT
rJMFF043A14+ CTAACTGCTAAGAGCCTAAGACTTAAGACGACTAGAGGCCGCAGAATGGCCAATATCGCT
rJMFF001J05+ NTAACTGCTAAGAGCCTAAGACTTAAGACGACTAGAGGCCGCAGAATGNCCAATATCGCT
rJMSF020B16+ CTAACTGCTAAGAGCCTAAGACTTAAGACGACTAGAGGCCGCAGAATGGCCAATATCGCT
                      ____________________________________________________________
consensus CTAACTGCTAAGAGCCTAAGACTTAAGACGACTAGAGGCCGCAGAATGGCCAATATCGCT
 
. : . : . : . : . : . :
JMFN035H12- GTTTTTTGTTTTTACATGAAGATTGGTCGTTCAGTTTGTCCCCTATTTATTTTATGTGTA
rJMFF050M10+ GTTTTTTGTTTTTACATGAAGATTGGTCGTTGAGTTTGTCCCCTATTTATTTTATGTGTA
rJMFF043A14+ GTTTTTTGTTTTTACATGAAGATTGGTCGTTGAGTTTGTCCCCTATTTATTTTATGTGTA
rJMFF001J05+ GTTTTTTNTNTTTACATGAAGANNGGTCGTTGAG
rJMSF020B16+ GTTTTTTGTTTTTACATGAAGATTGGTCGTTGAGTTTGTCCACTATTTATTTTATGTGTA
                      ____________________________________________________________
consensus GTTTTTTGTTTTTACATGAAGATTGGTCGTTGAGTTTGTCCCCTATTTATTTTATGTGTA
 
. : . : . : . : . : . :
JMFN035H12- CTTGC
rJMFF050M10+ CTTGCACTCTTGCTCGTGTGTTATTAAGGCTCTACTTATGTATGCAAAGCCTTTAATAAT
rJMFF043A14+ CTTGCACTCTTGCTCGTGTGTTATTAAGGCTCTACTTATGTATGCAAAGCCTTTAATAAT
rJMSF020B16+ CTTGCACTCTTGCTCGTGTGTTATTAAGGCTCTACTTATGTATGCAAAGCCTTTAATAAT
                      ____________________________________________________________
consensus CTTGCACTCTTGCTCGTGTGTTATTAAGGCTCTACTTATGTATGCAAAGCCTTTAATAAT
 
. : . : . : . : . : . :
rJMFF050M10+ ATACTCCGTATAGTAATAAA
rJMFF043A14+ ATACTCCGTATAGTAATAAATGGACCCCAGCCTATGCTTATCATTAAGAGTGCGATTTAC
rJMSF020B16+ ATACTCCGTATAGTAATAAATGGACACCAGCCTATGCTTATCATTAAGAGTGCGATTTAC
                      ____________________________________________________________
consensus ATACTCCGTATAGTAATAAATGGACCCCAGCCTATGCTTATCATTAAGAGTGCGATTTAC
 
. : . : . : . : . : . :
rJMFF043A14+ TTAATACATAC
rJMSF020B16+ TTAATACATACACTCGAGGGTGTGATTATGAATTTCCCTTGTTTCTTAAAAAAGAGTGTA
                      ____________________________________________________________
consensus TTAATACATACACTCGAGGGTGTGATTATGAATTTCCCTTGTTTCTTAAAAAAGAGTGTA
 
. : . : . : . : . : . :
rJMSF020B16+ ATGTTTTGGTCATATGTGTGACTTGCCAATTTAGAGATGTTATGTAAAAAATAAGAAGTT
                      ____________________________________________________________
consensus ATGTTTTGGTCATATGTGTGACTTGCCAATTTAGAGATGTTATGTAAAAAATAAGAAGTT