Contig 001346:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016L22Sequence246010665 (2)726001346 (2)ref|XP_006355789.1|2e-43PREDICTED: putative E3 ubiquitin-protein ligase RF298-like isoform X3 [Solanum
JMSF019I23Sequence392010665 (2)ref|XP_006355787.1|1e-20PREDICTED: putative E3 ubiquitin-protein ligase RF298-like isoform X1 [Solanum 750001346 (2)ref|XP_006355789.1|1e-44PREDICTED: putative E3 ubiquitin-protein ligase RF298-like isoform X3 [Solanum

Alignment

This contig is upended


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rJMSF016L22+                                                 AGGAGAAAGAAGAACATGTTA
rJMSF019I23+                                       CAGGAAAAGAAGGAGAAAGAAGAACATGTTA
                      ____________________________________________________________
consensus                                          CAGGAAAAGAAGGAGAAAGAAGAACATGTTA
 
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rJMSF016L22+          GGCAGGCCAAATTCCTGCAGGGTAAACGAGAGCGACTGGGAGCTTTGGCGAAAATAGAGG
rJMSF019I23+          GGCAGGCCAAATTCCTGCAGGGTAAACGAGAGCGACTGGGAGCTTTGGCGAAAATAGAGG
                      ____________________________________________________________
consensus             GGCAGGCCAAATTCCTGCAGGGTAAACGAGAGCGACTGGGAGCTTTGGCGAAAATAGAGG
 
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rJMSF016L22+          AGGATAATATTAGAGAAAATGCAGAAAAAGAGATGCAGAAGTGTAAAAATGAAATCGACA
rJMSF019I23+          AGGATAATATTAGAGAAAATGCAGAAAAAGAGATGCAGAAGTGTAAAAATGAAATCGACA
                      ____________________________________________________________
consensus             AGGATAATATTAGAGAAAATGCAGAAAAAGAGATGCAGAAGTGTAAAAATGAAATCGACA
 
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rJMSF016L22+          AGCTTGCAAGTGAAATCTCTGTACGAATATTAGCGTCTGAAGCTTCAAAAATAGAGGCAC
rJMSF019I23+          AGCTTGCAAGTGAAATCTCTGTACGAATATTAGCGTCTGAAGCTTCAAAAATAGAGGCAC
                      ____________________________________________________________
consensus             AGCTTGCAAGTGAAATCTCTGTACGAATATTAGCGTCTGAAGCTTCAAAAATAGAGGCAC
 
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rJMSF016L22+          TCCGGAGGGGCATTGGCTCGGGCTATGGTAAGTTGGGGCCTATGATGAGGGAGGGAGGTG
rJMSF019I23+          TCCGGAGGGGCATTGGCTCGGGCTATGGTAAGTTGGGGCCTATGATGAGGGAGGGAGGTG
                      ____________________________________________________________
consensus             TCCGGAGGGGCATTGGCTCGGGCTATGGTAAGTTGGGGCCTATGATGAGGGAGGGAGGTG
 
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rJMSF016L22+          AAAAGCGAGAACGAGAGTGCGTTATGTGTTTGACAGACGAAATTTCGGTGGTTTTCCTAC
rJMSF019I23+          AAAAGCGAGAACGAGAGTGCGTTATGTGTTTGACAGACGAAATTTCGGTGGTTTTCCTAC
                      ____________________________________________________________
consensus             AAAAGCGAGAACGAGAGTGCGTTATGTGTTTGACAGACGAAATTTCGGTGGTTTTCCTAC
 
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rJMSF016L22+          CGTGTGCACATCAAGTTCTTTGCACGCAGTGCAACATTCGTCACGAGAAGCAAGGAATGA
rJMSF019I23+          CGTGTGCACATCAAGTTCTTTGCACGCAGTGCAACATTCGTCACGAGAAGCAAGGAATGA
                      ____________________________________________________________
consensus             CGTGTGCACATCAAGTTCTTTGCACGCAGTGCAACATTCGTCACGAGAAGCAAGGAATGA
 
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rJMSF016L22+          ACGACTGCCCTTCTTGTCGAACGCCAATCAAGACAAGGATCAATGTGCGCTATTCTCCTT
rJMSF019I23+          ACGACTGCCCTTCTTGTCGAACGCCAATCAAGACAAGGATCAATGTGCGCTATTCTCCTT
                      ____________________________________________________________
consensus             ACGACTGCCCTTCTTGTCGAACGCCAATCAAGACAAGGATCAATGTGCGCTATTCTCCTT
 
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rJMSF016L22+          CCTAGACAAGGATCAATCCTTCTGGAGTTTAGAGGATGATCCCCATTCCATTTTCAACAG
rJMSF019I23+          CCTAGACAAGGATCAATCCTTCTGGAGTTTAGAGGATGATCCCCATTCCATTTTCAACAG
                      ____________________________________________________________
consensus             CCTAGACAAGGATCAATCCTTCTGGAGTTTAGAGGATGATCCCCATTCCATTTTCAACAG
 
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rJMSF016L22+          AAATACAACATTTGACATATTCATCCATTTATGTTTTTTTGGGCTTTTATTTTACGGCTA
rJMSF019I23+          AAATACAACATTTGACATATTCATCCATTTATGTTTTTTTGGGCTTTTATTTTACGGCTA
                      ____________________________________________________________
consensus             AAATACAACATTTGACATATTCATCCATTTATGTTTTTTTGGGCTTTTATTTTACGGCTA
 
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rJMSF016L22+          AAAGTAGAATACTTGAGAAAAGATTGAGAGAAACAAACAGACAGATACACACTAGAAAGC
rJMSF019I23+          AAAGTAGAATACTTGAGAAAAGATTGAGAGAAACAAACAGACAGATACACACTAGAAAGC
                      ____________________________________________________________
consensus             AAAGTAGAATACTTGAGAAAAGATTGAGAGAAACAAACAGACAGATACACACTAGAAAGC
 
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rJMSF016L22+          TATGCCCCAGTGGTGTAAGGGCAGTTGCCTTCTAGCCTTTGTAAATGATTTACCAGTCAG
rJMSF019I23+          TATGCCCCAGTGGTGTAAGGGCAGTTGCCTTCTAGCCTTTGTAAATGATTTACCAGTCAG
                      ____________________________________________________________
consensus             TATGCCCCAGTGGTGTAAGGGCAGTTGCCTTCTAGCCTTTGTAAATGATTTACCAGTCAG
 
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rJMSF016L22+          TCCTTCAAATTCCCTGGCAACCAGTTAACCAGGAAAAAACTTTTT               
rJMSF019I23+          TCCTTCAAATTCCCTGGCAA-CAGTTAACCAGGAAAAAACTTTTTGTTTGTGTTCTGGAG
                      ____________________________________________________________
consensus             TCCTTCAAATTCCCTGGCAACCAGTTAACCAGGAAAAAACTTTTTGTTTGTGTTCTGGAG