Contig 001343:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001P03Sequence319005749 (4)ref|XP_010316268.1|4e-48PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Solanum l772001343 (5)ref|XP_009607573.1|7e-100PREDICTED: violaxanthin de-epoxidase, chloroplastic [Nicotiana tomentosiformis]
JMSF018P16Sequence496002342 (2)sp|Q40593.1|VDE_TOBAC3e-04RecName: Full=Violaxanthin de-epoxidase, chloroplastic; Flags: Precursor [Nicot800001343 (5)ref|XP_009607573.1|1e-50PREDICTED: violaxanthin de-epoxidase, chloroplastic [Nicotiana tomentosiformis]
JMSF022I05Sequence675009321 (2)sp|Q40593.1|VDE_TOBAC6e-34RecName: Full=Violaxanthin de-epoxidase, chloroplastic; Flags: Precursor [Nicot775001343 (5)ref|XP_009607573.1|4e-93PREDICTED: violaxanthin de-epoxidase, chloroplastic [Nicotiana tomentosiformis]
JMSF027C08Sequence651009321 (2)gb|AFP57681.1|2e-52violaxanthin de-epoxidase [Nicotiana tabacum]798001343 (5)gb|AFP57681.1|3e-46violaxanthin de-epoxidase [Nicotiana tabacum]
JMSF034F13Sequence662002342 (2)sp|Q40593.1|VDE_TOBAC5e-34RecName: Full=Violaxanthin de-epoxidase, chloroplastic; Flags: Precursor [Nicot790001343 (5)ref|XP_009607573.1|2e-66PREDICTED: violaxanthin de-epoxidase, chloroplastic [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF034F13+                                                               TCATATG
                      ____________________________________________________________
consensus                                                                  TCATATG
 
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rJMSF034F13+          ATTAGGATTCTATATATATATAGATATATAAAAGTTAGTCCNTGAGCNTTGTTGAGNAAT
                      ____________________________________________________________
consensus             ATTAGGATTCTATATATATATAGATATATAAAAGTTAGTCCNTGAGCNTTGTTGAGNAAT
 
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rJMSF034F13+          AAGTCAAATGACTTAGCTTTCACTCATTGATTGACTTATTGAAACTTGAAAGAGACCTGA
                      ____________________________________________________________
consensus             AAGTCAAATGACTTAGCTTTCACTCATTGATTGACTTATTGAAACTTGAAAGAGACCTGA
 
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rJMSF022I05+                                         GGTATATATTGTCATCCAAAGTTGAAAAT
rJMSF034F13+          TCTTCATTCCCCAATTGACTATATTCATCCAGGTATATATTGTCATCCAAAGTTGAAAAT
rJMSF001P03+                                         GGTATATATTGTCATCCAAAGTTGAAAAT
                      ____________________________________________________________
consensus             TCTTCATTCCCCAATTGACTATATTCATCCAGGTATATATTGTCATCCAAAGTTGAAAAT
 
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rJMSF022I05+          ACGCCAGATGATTATATATTTGTATATTATCGTGGAAAAAATGATGCATGGGATGGATAC
rJMSF034F13+          ACGCCAGATGATTATATATTTGTATATTATCGTGGAAAAAATGATGCATGGGATGGATAC
rJMSF001P03+          ACGCCAGATGATTATATATTTGTATATTATCGTGGAAAAAATGATGCATGGGATGGATAC
rJMSF027C08+                                                                 GATAC
rJMSF018P16+                                                  ATGATGCATGGGATGGATAC
                      ____________________________________________________________
consensus             ACGCCAGATGATTATATATTTGTATATTATCGTGGAAAAAATGATGCATGGGATGGATAC
 
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rJMSF022I05+          GGTGGTGCTGTACTGTACACGAGGAGTGCTGTTCTGCCAGAAAGTATAGTTCCCGAAGTA
rJMSF034F13+          GGTGGTGCTGTACTGTACACGAGGAGTGCTGTTCTGCCAGAAAGTATAGTTCCCGAAGTA
rJMSF001P03+          GGTGGTGCTGTACTGTACACGAGGAGTGCTGTTCTGCCAGAAAGTATAGTTCCCGAAGTA
rJMSF027C08+          GGTGGTGCTGTACTGTACACGAGGAGTGCTGTTCTGCCAGAAAGTATAGTTCCCGAAGTA
rJMSF018P16+          GGTGGTGCTGTACTGTACACGAGGAGTGCTGTTCTGCCAGAAAGTATAGTTCCCGAAGTA
                      ____________________________________________________________
consensus             GGTGGTGCTGTACTGTACACGAGGAGTGCTGTTCTGCCAGAAAGTATAGTTCCCGAAGTA
 
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rJMSF022I05+          CAGAGGGCAGCACAGAGCGTAGGGCGTAATTTTGACGAATTCATAAAAACTGACAATACT
rJMSF034F13+          CAGAGGGCAGCACAGAGCGTAGGGCGTAATTTTGACGAATTCATAAAAACTGACAATACT
rJMSF001P03+          CAGAGGGCAGCACAGAGCGTAGGGCGTAATTTTGACGAATTCATAAAAACTGACAATACT
rJMSF027C08+          CAGAGGGCAGCACAGAGCGTAGGGCGTAATTTTGACGAATTCATAAAAACTGACAATACT
rJMSF018P16+          CAGAGGGCAGCACAGAGCGTAGGGCGTAATTTTGACGAATTCATAAAAACTGACAATACT
                      ____________________________________________________________
consensus             CAGAGGGCAGCACAGAGCGTAGGGCGTAATTTTGACGAATTCATAAAAACTGACAATACT
 
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rJMSF022I05+          TGTGGACCCGAACCTCCCCTTGTGGAGAGACTGGAGAAGACGGTTGAAGAGGGAGAGAAG
rJMSF034F13+          TGTGGACCCGAACCTCCCCTTGTGGAGAGACTGGAGAAGACGGTTGAAGAGGGAGCGAAG
rJMSF001P03+          TGTGGACCCGAACCTCCCCTTGTGGAGAGACTGGAGAAGACGGTTGAAGAGGGAGAGAAG
rJMSF027C08+          TGTGGACCCGAACCTCCCCTTGTGGAGAGACTGGAGAAGACGGTTGAAGAGGGAGAGAAG
rJMSF018P16+          TGTGGACCCGAACCTCCCCTTGTGGAGAGACTGGAGAAGACGGTTGAAGAGGGAGAGAAG
                      ____________________________________________________________
consensus             TGTGGACCCGAACCTCCCCTTGTGGAGAGACTGGAGAAGACGGTTGAAGAGGGAGAGAAG
 
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rJMSF022I05+          ACAATCATAAGAGAAGTGGAAGAGATAGAAGGTGAAGTGGAGAAGGTGACAAGTAAGGAA
rJMSF034F13+          ACAATCATAAGAGAAGTGGAAGAGATAGAAGGTGAAGTGGAGAAGGTGACAAGTAAGGAA
rJMSF001P03+          ACAATCATAAGAGAAGTGGAAGAGATAGAAGGTGAAGTGGAGAAGGTGACAAGTAAGGAA
rJMSF027C08+          ACAATCATAAGAGAAGTGGAAGAGATAGAAGGTGAAGTGGAGAAGGTGACAAGTAAGGAA
rJMSF018P16+          ACAATCATAAGAGAAGTGGAAGAGATAGAAGGTGAAGTGGAGAAGGTGACAAGTAAGGAA
                      ____________________________________________________________
consensus             ACAATCATAAGAGAAGTGGAAGAGATAGAAGGTGAAGTGGAGAAGGTGACAAGTAAGGAA
 
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rJMSF022I05+          ATCAATTTGTTCAGTAAACTGTTGGAAGGCTTGAAGGAACTGCAGAAGGATGAAGAGTAC
rJMSF034F13+          ATCAATTTGTTCAGTAAACTGTTGGAAGGCTTGAAGGAACTGCAGAAGGATGAAGAGTAC
rJMSF001P03+          ATCAATTTGTTCAGTAAACTGTTGGAAGGCTTGAAGGAACTGCAGAAGGATGAAGAGTAC
rJMSF027C08+          ATCAATTTGTTCAGTAAACTGTTGGAAGGCTTGAAGGAACTGCAGAAGGATGAAGAGTAC
rJMSF018P16+          ATCAATTTGTTCAGTAAACTGTTGGAAGGCTTGAAGGAACTGCAGAAGGATGAAGAGTAC
                      ____________________________________________________________
consensus             ATCAATTTGTTCAGTAAACTGTTGGAAGGCTTGAAGGAACTGCAGAAGGATGAAGAGTAC
 
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rJMSF022I05+          TTCCTAAAGGAGCTGAGCAAAGAAGAAAAGGAAGTTCTTGATGGGCTTCAAATGGAAGCA
rJMSF034F13+          TTCCTAAAGGAGCTGAGCAAAGAAGAAAAGGAAGTTCTTGATGGGCTTCAAATGGAAGCA
rJMSF001P03+          TTCCTAAAGGAGCTGAGCAAAGAAGAAAAGGAAGTTCTTGATGGGCTTCAAATGGAAGCA
rJMSF027C08+          TTCCTAAAGGAGCTGAGCAAAGAAGAAAAGGAAGTTCTTGATGGGCTTCAAATGGAAGCA
rJMSF018P16+          TTCCTAAAGGAGCTGAGCAAAGAAGAAAAGGAAGTTCTTGATGGGCTTCAAATGGAAGCA
                      ____________________________________________________________
consensus             TTCCTAAAGGAGCTGAGCAAAGAAGAAAAGGAAGTTCTTGATGGGCTTCAAATGGAAGCA
 
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rJMSF022I05+          AGTGAAGTGGAGAAACTATTCGGTCGCGCTTTGCCTTTGAGGAAACTAAGATAATAGTGG
rJMSF034F13+          AGTGAAGTGGAGAAACTATTCGGTCGCGCTTTGCCTTTGAGGAAACTAAGATAATAGTGG
rJMSF001P03+          AGTGAAGTGGAGAAACTATTCGGTCGCGCTTTGCCTTTGAGGAAACTAAGATAATAGTGG
rJMSF027C08+          AGTGAAGTGGAGAAACTATTCGGTCGCGCTTTGCCTTTGAGGAAACTAAGATAATAGTGG
rJMSF018P16+          AGTGAAGTGGAGAAACTATTCGGTCGCGCTTTGCCTTTGAGGAAACTAAGATAATAGTGG
                      ____________________________________________________________
consensus             AGTGAAGTGGAGAAACTATTCGGTCGCGCTTTGCCTTTGAGGAAACTAAGATAATAGTGG
 
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rJMSF022I05+          CCATGAACACGATGATCGTCTTATTCTTCG                              
rJMSF034F13+          CCATGAACACGATGATCGTCTTATTCTTCG                              
rJMSF001P03+          CCATGAACACGATGATCGTCTTATTCTTCG                              
rJMSF027C08+          CCATGAACACGATGATCGTCTTATTCTTCGGTTACAAGATGGATCGGATTTTATCCCGTG
rJMSF018P16+          CCATGAACACGATGATCGTCTTATTCTTCGGTTACAAGATGGATCGGATTTTATCCCGTG
                      ____________________________________________________________
consensus             CCATGAACACGATGATCGTCTTATTCTTCGGTTACAAGATGGATCGGATTTTATCCCGTG
 
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rJMSF027C08+          GGCTTTCTTGTAAATCAAATGAAGATGGTTTTTGTGAATTAACTATATGTGGCTTGGCAC
rJMSF018P16+          GGCTTTCTTGTAAATCAAATGAAGATGGTTTTTGTGAATTAACTATATGTGGCTTGGCAC
                      ____________________________________________________________
consensus             GGCTTTCTTGTAAATCAAATGAAGATGGTTTTTGTGAATTAACTATATGTGGCTTGGCAC
 
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rJMSF027C08+          ACCTCAAGATACCAAGGCACGACCTAACCTGATGCACGGACACAAGATTGAGCCTTGACA
rJMSF018P16+          ACCTCAAGATACCAAGGCACGACCTAACCTGATGCACGGACACAAGATTGAGCCTTGACA
                      ____________________________________________________________
consensus             ACCTCAAGATACCAAGGCACGACCTAACCTGATGCACGGACACAAGATTGAGCCTTGACA
 
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rJMSF027C08+          GACGCAGTGAGAAAATTACAATCTTCTATCTAATGGGCTGATGAATCATTGTGA-TTATC
rJMSF018P16+          GACGCAGTGAGAAAATTACAATCTTCTATCTAATGGGCTGATGAATCATTGTGATTTATC
                      ____________________________________________________________
consensus             GACGCAGTGAGAAAATTACAATCTTCTATCTAATGGGCTGATGAATCATTGTGATTTATC
 
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rJMSF027C08+          CGTCAGTATCTTATTGGATTAGGGTGTGAGAGCTCTAGAAGCGAGAGCATTTTACCTTTT
rJMSF018P16+          CGTCAGTATCTTATTGGATTAGGGTGTGAGAGCTCTAGAAGCGAGAGCATTTTACCTTTT
                      ____________________________________________________________
consensus             CGTCAGTATCTTATTGGATTAGGGTGTGAGAGCTCTAGAAGCGAGAGCATTTTACCTTTT
 
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rJMSF027C08+          CGTAGGTAAGTATTGAGAATTGAGAAAACTCTTTAATAGTGTTGGGATATGAGATTGTG 
rJMSF018P16+          CGTAGGTAAGTATTGAGAATTGAGAAAACTCTTTAATAGTGTTGGGATATGAGATTGTGT
                      ____________________________________________________________
consensus             CGTAGGTAAGTATTGAGAATTGAGAAAACTCTTTAATAGTGTTGGGATATGAGATTGTGT