Contig 001342:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF048M11+                                                       TACAGACAATTCTTC
                      ____________________________________________________________
consensus                                                          TACAGACAATTCTTC
 
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rJMSF048M11+          TGTGAAACTTGACCTGCTTTCTAGGGATACCGCATCTTCTGTGAAAGAGCTATCCAGGGA
                      ____________________________________________________________
consensus             TGTGAAACTTGACCTGCTTTCTAGGGATACCGCATCTTCTGTGAAAGAGCTATCCAGGGA
 
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rJMSF048M11+          TAACCCAGGAAGTTTCAGGTTATTTGGACAGACAGTTTCAGTTTCTATAGCAGTAGCCGA
rJMSF018P03+                                 TTGGACAGACAGTTTCAGTTTCTATAGCAGTAGCCGA
                      ____________________________________________________________
consensus             TAACCCAGGAAGTTTCAGGTTATTTGGACAGACAGTTTCAGTTTCTATAGCAGTAGCCGA
 
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rJMSF048M11+          TTCTTCTAAACAAGAACCACATAACTTTAAGGATGCTGCTAGAGAGGAAAATGATAACAC
rJMSF018P03+          TT-TTCTAAACAAGAACCACATAACTTTAAGGATGCTGCTAGAGAGGAAAATGATAACAC
                      ____________________________________________________________
consensus             TTCTTCTAAACAAGAACCACATAACTTTAAGGATGCTGCTAGAGAGGAAAATGATAACAC
 
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rJMSF048M11+          AACAGTTGAAGGTCTACCTAACCATGTAAATTCGCAGTTTGTTTACACAATGGTTCCACA
rJMSF018P03+          AACAGTTGAAGGTCTACCTAACCATGTAAATTCGCAGTTTGTTTACACAATGGTTCCACA
                      ____________________________________________________________
consensus             AACAGTTGAAGGTCTACCTAACCATGTAAATTCGCAGTTTGTTTACACAATGGTTCCACA
 
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rJMSF048M11+          CAGTATGATCCCCCCAGCCAGCTGGTTTCCACAGTTTTTACCAAATAACGACTCCAAACC
rJMSF018P03+          CAGTATGATCCCCCCAGCCAGCTGGTTTCCACAGTTTTTACCAAATAACGACTCCAAACC
                      ____________________________________________________________
consensus             CAGTATGATCCCCCCAGCCAGCTGGTTTCCACAGTTTTTACCAAATAACGACTCCAAACC
 
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rJMSF048M11+          GACTACCATGCCGCCTTGGTGGTCTTGGCACCAAGATCTCATGCATCAGTATTTTTCTTC
rJMSF018P03+          GACTACCATGCCGCCTTGGTGGTCTTGGCACCAAGATCTCATGCATCGGTATTTTTCTTC
                      ____________________________________________________________
consensus             GACTACCATGCCGCCTTGGTGGTCTTGGCACCAAGATCTCATGCATCGGTATTTTTCTTC
 
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rJMSF048M11+          GTGCAGCCATGTAGCTGCACAAACAACATATCCCGAAGAGGACTTCAAACACCCTCGACC
rJMSF018P03+          GTGCAGCCATGTAGCTGCACAAACAACATATCCCGAAGAGGACTTCAAACACCCTCGACC
                      ____________________________________________________________
consensus             GTGCAGCCATGTAGCTGCACAAACAACATATCCCGAAGAGGACTTCAAACACCCTCGACC
 
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rJMSF048M11+          TCTGAGGGAAAGGTCATCAACTGATTCAAGCAGTGGATCAGCAAGCGAAGTAAACAGCGT
rJMSF018P03+          TCTGAGGGAAAGGTCATCAACTGATTCAAGCAGTGGATCAGCAAGCGAAGTAAACAGCGT
                      ____________________________________________________________
consensus             TCTGAGGGAAAGGTCATCAACTGATTCAAGCAGTGGATCAGCAAGCGAAGTAAACAGCGT
 
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rJMSF048M11+          GCTTAGAAATTGTGATGCAATTGAATCTAAAGGTGGCACAGTGAAGCTCGAGAATACCCA
rJMSF018P03+          GCTTAGAAATTGTGATGCAATTGAATCTAAAGGTGGCACAGTGAAGCTCGAGAATACCCA
                      ____________________________________________________________
consensus             GCTTAGAAATTGTGATGCAATTGAATCTAAAGGTGGCACAGTGAAGCTCGAGAATACCCA
 
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rJMSF048M11+          GAACAGGAAAGGGTTTGTACCATACAAAAAATGCTTAGCTGAGAGAAATGAGGAGTCATC
rJMSF018P03+          GAACAGGAAAGGGTTTGTACCATACAAAAAATGCTTAGCTGAGAGAAATGAGGAGTCATC
                      ____________________________________________________________
consensus             GAACAGGAAAGGGTTTGTACCATACAAAAAATGCTTAGCTGAGAGAAATGAGGAGTCATC
 
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rJMSF048M11+          AGCAGCTGACATAGAAGAACCAGAGAGGAAAAAGCTGTGTGTTGGGTTATAGAACGAACA
rJMSF018P03+          AGCAGCTGACATAGAAGAACCAGAGAGGAAAAAGCTGTGTGTTGGGTTATAGAACGAACA
                      ____________________________________________________________
consensus             AGCAGCTGACATAGAAGAACCAGAGAGGAAAAAGCTGTGTGTTGGGTTATAGAACGAACA
 
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rJMSF048M11+          TTTTTCATTTTGGTATGGTTCTCGATCTAGTCTACTTCCACAGGATCATTCTTTATGAGT
rJMSF018P03+          TTTTTCATTTTGGTATGGTTCTCGATCTAGTCTACTTCCACAGGATCATTCTTTATGAGT
                      ____________________________________________________________
consensus             TTTTTCATTTTGGTATGGTTCTCGATCTAGTCTACTTCCACAGGATCATTCTTTATGAGT
 
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rJMSF048M11+          ATGGAGTATGGAT                                               
rJMSF018P03+          ATGGAGTATGGATGTAACCTTCCTCTGTTGTAAAGATTTAAGGCTAGAGAACCATTTCTC
                      ____________________________________________________________
consensus             ATGGAGTATGGATGTAACCTTCCTCTGTTGTAAAGATTTAAGGCTAGAGAACCATTTCTC
 
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rJMSF018P03+          CCCCACTTTTTCTTTAATTTTTAGCATAGAATATAATTTTTTTGCACCCATGTATCCATT
                      ____________________________________________________________
consensus             CCCCACTTTTTCTTTAATTTTTAGCATAGAATATAATTTTTTTGCACCCATGTATCCATT