Contig 001341:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN035J22Sequence363001341 (6)ref|XP_009627760.1|3e-55PREDICTED: 60S ribosomal protein L37 [Nicotiana tomentosiformis] ref|XP_00960448
JMFN046O07Sequence521001341 (6)ref|XP_009627760.1|4e-56PREDICTED: 60S ribosomal protein L37 [Nicotiana tomentosiformis] ref|XP_00960448
JMSF018M20Sequence478001341 (6)ref|XP_009627760.1|2e-58PREDICTED: 60S ribosomal protein L37 [Nicotiana tomentosiformis] ref|XP_00960448419001341 (6)ref|XP_009627760.1|1e-58PREDICTED: 60S ribosomal protein L37 [Nicotiana tomentosiformis] ref|XP_00960448
JMSF038A11Sequence502001341 (6)ref|XP_009627760.1|3e-58PREDICTED: 60S ribosomal protein L37 [Nicotiana tomentosiformis] ref|XP_00960448441001341 (6)ref|XP_009627760.1|2e-58PREDICTED: 60S ribosomal protein L37 [Nicotiana tomentosiformis] ref|XP_00960448

Alignment

This contig is upended


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JMFN046O07+                                  AATTTGATGAAGGGGGTCTGACTTCTGAGTTTAATAA
                      ____________________________________________________________
consensus                                    AATTTGATGAAGGGGGTCTGACTTCTGAGTTTAATAA
 
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JMFN046O07+           TATCAAGCAATACAAAATTAAGTTACAACTAGCTTTCAAAGAAGATATAGGGTAGAATCT
JMSF038A11+                                                          TAGGGTAGAATCT
                      ____________________________________________________________
consensus             TATCAAGCAATACAAAATTAAGTTACAACTAGCTTTCAAAGAAGATATAGGGTAGAATCT
 
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JMFN046O07+           GAATCTGCTTGTCAGAAAACAAAATAATCCACATTGACAACAACTGGTCCTCTAACAAGC
JMSF018M20+                      TCAGAAAACAAAATAATCCACATTGACAACAACTGGTCCTCTAACAAGC
rJMSF038A11-                                                 ACAACTGGTCCTCTAACAAGC
JMSF038A11+           GAATCTGCTTGTCAGAAAACAAAATAATCCACATTGACAACAACTGGTCCTCTAACAAGC
                      ____________________________________________________________
consensus             GAATCTGCTTGTCAGAAAACAAAATAATCCACATTGACAACAACTGGTCCTCTAACAAGC
 
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JMFN046O07+           AAAAACCAAACATGTTTTGTAATAAAATTTGGGAAACTCTTGGAAGAATAAAAACACTGC
JMSF018M20+           AAAAACCAAACATGTTTTGTAATAAAATTTGGGAAACTCTTGGAAGAATAAAAACACTGC
rJMSF038A11-          AAAAACCAAACATGTTTTGTAATAAAATTTGGGAAACTCTTGGAAGAATAAAAACACTGC
JMSF038A11+           AAAAACCAAACATGTTTTGTAATAAAATTTGGGAAACTCTTGGAAGAATAAAAACACTGC
JMFN035J22+                                   AAATTGGGGAAACTCTTGGAAGAATAAAAACGCTGC
rJMSF018M20-           AAAACCAAACATGTTTTGTAATAAAATTTGGGAAACTCTTGGAAGAATAAAAACACTGC
                      ____________________________________________________________
consensus             AAAAACCAAACATGTTTTGTAATAAAATTTGGGAAACTCTTGGAAGAATAAAAACACTGC
 
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JMFN046O07+           TAAAACTGAGGAAATGAAATTTAAGAGGCTGCTGCTGCTCCCTTCTTCCTTGGAGTTGCC
JMSF018M20+           TAAAACTGAGGAAATGAAATTTAAGAGGCTGCTGCTGCTCCCTTCTTCCTTGGAGTTGCC
rJMSF038A11-          TAAAACTGAGGAAATGAAATTTAAGAGGCTGCTGCTGCTCCCTTCTTCCTTGGAGTTGCC
JMSF038A11+           TAAAACTGAGGAAATGAAATTTAAGAGGCTGCTGCTGCTCCCTTCTTCCTTGGAGTTGCC
JMFN035J22+           TAAGAGTGAGGAAATGAAATTTAAGAGGCTGCTGCTGCTCCCTTCTTCCTTGGAGTTGCC
rJMSF018M20-          TAAAACTGAGGAAATGAAATTTAAGAGGCTGCTGCTGCTCCCTTCTTCCTTGGAGTTGCC
                      ____________________________________________________________
consensus             TAAAACTGAGGAAATGAAATTTAAGAGGCTGCTGCTGCTCCCTTCTTCCTTGGAGTTGCC
 
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JMFN046O07+           TCAGTACCTTCTCTGAAGTTGGTCTTGAATCTACGAGGAACATTGCGAAGATACCTCATG
JMSF018M20+           TCAGTACCTTCTCTGAAGTTGGTCTTGAATCTACGAGGAACATTGCGAAGATACCTCATG
rJMSF038A11-          TCAGTACCTTCTCTGAAGTTGGTCTTGAATCTACGAGGAACATTGCGAAGATACCTCATG
JMSF038A11+           TCAGTACCTTCTCTGAAGTTGGTCTTGAATCTACGAGGAACATTGCGAAGATACCTCATG
JMFN035J22+           TCAGTACGTTCTCTGAAGTTGGTCTTGAATCTACGAGGAACAGTGCGAAGATGCCTCATG
rJMSF018M20-          TCAGTACCTTCTCTGAAGTTGGTCTTGAATCTACGAGGAACATTGCGAAGATACCTCATG
                      ____________________________________________________________
consensus             TCAGTACCTTCTCTGAAGTTGGTCTTGAATCTACGAGGAACATTGCGAAGATACCTCATG
 
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JMFN046O07+           CGGCCAGTTCCAGTAGTCTTTCTCCTAATTGCCTTGACACTCCAATTATATTTTCTAATG
JMSF018M20+           CGGCCAGTTCCAGTAGTCTTTCTCCTAATTGCCTTGACACTCCAATTATATTTTCTAATG
rJMSF038A11-          CGGCCAGTTCCAGTAGTCTTTCTCCTAATTGCCTTGACACTCCAATTATATTTTCTAATG
JMSF038A11+           CGGCCAGTTCCAGTAGTCTTTCTCCTAATTGCCTTGACACTCCAATTATATTTTCTAATG
JMFN035J22+           CGGCCAGTTCCAGTAGTCTTTCTCCTAATTGCCTTGACACTCCAATTATATTTTGTAATG
rJMSF018M20-          CGGCCAGTTCCAGTAGTCTTTCTCCTAATTGCCTTGACACTCCAATTATATTTTCTAATG
                      ____________________________________________________________
consensus             CGGCCAGTTCCAGTAGTCTTTCTCCTAATTGCCTTGACACTCCAATTATATTTTCTAATG
 
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JMFN046O07+           CGTGCAGCAGGATAGGCACAAGCGGAACACCGGCTCTTCTGGATATGGAAGCTGCGGCGG
JMSF018M20+           CGTGCAGCAGGATAGGCACAAGCGGAACACCGGCTCTTCTGGATATGGAAGCTGCGGCGG
rJMSF038A11-          CGTGCAGCAGGATAGGCACAAGCGGAACACCGGCTCTTCTGGATATGGAAGCTGCGGCGG
JMSF038A11+           CGTGCAGCAGGATAGGCACAAGCGGAACACCGGCTCTTCTGGATATGGAAGCTGCGGCGG
JMFN035J22+           CGTGCAGCAGGATAGGCACAAGCGGAACACCGGCTCTTCTGGATATGGAAGCTGCGGCGG
rJMSF018M20-          CGTGCAGCAGGATAGGCACAAGCGGAACACCGGCTCTTCTGGATATGGAAGCTGCGGCGG
                      ____________________________________________________________
consensus             CGTGCAGCAGGATAGGCACAAGCGGAACACCGGCTCTTCTGGATATGGAAGCTGCGGCGG
 
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JMFN046O07+           CCGCATCTCACACATAGTGTATGTGTCTTGTTCCTCCGCTTACCAAAACTTCCGGTACCT
JMSF018M20+           CCGCATCTCACACATAGTGTATGTGTCTTGTTCCTCCGCTTACCAAAACTTCCGGTACCT
rJMSF038A11-          CCGCATCTCACACATAGTGTATGTGTCTTGTTCCTCCGCTTACCAAAACTTCCGGTACCT
JMSF038A11+           CCGCATCTCACACATAGTGTATGTGTCTTGTTCCTCCGCTTACCAAAACTTCCGGTACCT
JMFN035J22+           CCGCATCTCACACATAGTGTATGTGTCTTGTTCCTCCGCTTACCAAAACTTCCGGTACCT
rJMSF018M20-          CCGCATCTCACACATAGTGTATGTGTCTTGTTCCTCCGCTTACCAAAACTTCCGGTACCT
                      ____________________________________________________________
consensus             CCGCATCTCACACATAGTGTATGTGTCTTGTTCCTCCGCTTACCAAAACTTCCGGTACCT
 
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JMFN046O07+           TTTC                                                        
JMSF018M20+           TTTCCCATTTGCGCAGCGGAGGCGAAAAACCCTGGCTTCTGAAGTTCGCAGTAGATCTCC
rJMSF038A11-          TTTCCCATTTGCGCAGCGGAGGCGAAAAACCCTGGCTTCTGAAGTTCGCAGTAGATCTCC
JMSF038A11+           TTTCCCATTTGCGCAGCGGAGGCGAAAAACCCTGGCTTCTGAAGTTCGCAGTAGATCTCC
JMFN035J22+           TTTCCCATTTGCGCAGCGGAGGCGAAA                                 
rJMSF018M20-          TTTCCCATTTGCGCAGCGGAGGCGAAAAACCCTGGCTTCTGAAGTTCGCAGTAGATCTCC
                      ____________________________________________________________
consensus             TTTCCCATTTGCGCAGCGGAGGCGAAAAACCCTGGCTTCTGAAGTTCGCAGTAGATCTCC