| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF036O04 | Sequence | 404 | 000209 (5) | ref|XP_009775473.1| | 4e-31 | PREDICTED: protein NRT1/ PTR FAMILY 2.13-like [Nicotiana sylvestris] | 692 | 001337 (4) | emb|CDP00275.1| | 1e-65 | unnamed protein product [Coffea canephora] |
| JMFF040O09 | Sequence | 480 | 000209 (5) | ref|XP_009775473.1| | 1e-42 | PREDICTED: protein NRT1/ PTR FAMILY 2.13-like [Nicotiana sylvestris] | 755 | 001337 (4) | emb|CDP00275.1| | 1e-73 | unnamed protein product [Coffea canephora] |
| JMSF015L06 | Sequence | 559 | 000209 (5) | ref|XP_009775473.1| | 9e-58 | PREDICTED: protein NRT1/ PTR FAMILY 2.13-like [Nicotiana sylvestris] | 733 | 001337 (4) | emb|CDP00275.1| | 6e-97 | unnamed protein product [Coffea canephora] |
| JMSF017P08 | Sequence | 483 | 000209 (5) | ref|XP_009610610.1| | 8e-72 | PREDICTED: protein NRT1/ PTR FAMILY 2.13 isoform X1 [Nicotiana tomentosiformis] | 727 | 001337 (4) | emb|CDP00275.1| | 3e-90 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF015L06+ CATCTCCATGATCACCATCGCGCTATGGATCCCCGTGTAC
rJMFF040O09+ CTCCATGATCACCATCGCGCTATGGATCCCCGTGTAC
rJMSF017P08+ CGTGTAC
____________________________________________________________
consensus CATCTCCATGATCACCATCGCGCTATGGATCCCCGTGTAC
. : . : . : . : . : . :
rJMSF015L06+ GACCGCCTCCTCGTGCCGCTCATCCGAAAGAGGACCAAAATCGAGGGCGGGATAACAATG
rJMFF036O04+ GAAAGAGGACCAAAATCGAGGGCGGGATAACAATG
rJMFF040O09+ GACCGCCTCCTCGTGCCGCTCATCNGAAAGAGGACCAAAATCGAGGGCGGGATAACAATG
rJMSF017P08+ GACCGCCTCCTCGTGCCGCTCATCCGAAAGAGGACCAAAATCGAGGGCGGGATAACAATG
____________________________________________________________
consensus GACCGCCTCCTCGTGCCGCTCATCCGAAAGAGGACCAAAATCGAGGGCGGGATAACAATG
. : . : . : . : . : . :
rJMSF015L06+ CTCCAAAGAATCGGGATCGGACTCGTGTTCTCTATCATAGGTATGATCGTGTCGGCACTA
rJMFF036O04+ CTCCAAAGAATCGGGATCGGACTCGTGTTCTCTATCATAGGTATGATCGTGTCGGCACTA
rJMFF040O09+ CTCCAAAGAATCGGGATCGGACTCGTGTTCTCTATCATAGGTATGATCGTGTCGGCACTA
rJMSF017P08+ CTCCAAAGAATCGGGATCGGACTCGTGTTCTCTATCATAGGTATGATCGTGTCGGCACTA
____________________________________________________________
consensus CTCCAAAGAATCGGGATCGGACTCGTGTTCTCTATCATAGGTATGATCGTGTCGGCACTA
. : . : . : . : . : . :
rJMSF015L06+ GTGGAGAGGAAGCGGCGGGCCGCCGCCGTGTCGCATGGCGGCGCCGACGGTGTCGCCCCC
rJMFF036O04+ GTGGAGAGGAAGCGGCGGGCCGCCGCCGTGTCGCATGGCGGCGCCGACGGTGTCGCCCCC
rJMFF040O09+ GTGGAGAGGAAGCGGCGGGCCGCCGCCGTGTCGCATGGCGGCGCCGACGGTGTCGCCCCC
rJMSF017P08+ GTGGAGAGGAAGCGGCGGGCCGCCGCCGTGTCGCATGGCGGCGCCGACGGTGTCGCCCCC
____________________________________________________________
consensus GTGGAGAGGAAGCGGCGGGCCGCCGCCGTGTCGCATGGCGGCGCCGACGGTGTCGCCCCC
. : . : . : . : . : . :
rJMSF015L06+ ATCACCGTCATGTGGCTCGCCCCGCAGCTGATCGTCATGGGATTCGCCGAGGCGTTCAAC
rJMFF036O04+ ATCACCGTCATGTGGCTCGCCCCGCAGCTGATCGTCATGGGATTCGCCGAGGCGTTCAAC
rJMFF040O09+ ATCACCGTCATGTGGCTCGCCCCGCAGCTGATCGTCATGGGATTCGCCGAGGCGTTCAAC
rJMSF017P08+ ATCACCGTCATGTGGCTCGCCCCGCAGCTGATCGTCATGGGATTCGCCGAGGCGTTCAAC
____________________________________________________________
consensus ATCACCGTCATGTGGCTCGCCCCGCAGCTGATCGTCATGGGATTCGCCGAGGCGTTCAAC
. : . : . : . : . : . :
rJMSF015L06+ ATCATCGGCCAGATTGAGTTCTTCAACAAGGAGTTCCCGGACAGCATGACCAGCGTTGCC
rJMFF036O04+ ATCATCGGCCAGATTGAGTTCTTCAACAAGGAGTTCCCGGACAGCATGACCAGCGTGGCC
rJMFF040O09+ ATCATCGGCCAGATTGAGTTCTTCAACAAGGAGTTCCCGGACAGCATGACCAGCGTGGCC
rJMSF017P08+ ATCATCGGCCAGATTGAGTTCTTCAACAAGGAGTTCCCGGACAGCATGACCAGCGTGGCC
____________________________________________________________
consensus ATCATCGGCCAGATTGAGTTCTTCAACAAGGAGTTCCCGGACAGCATGACCAGCGTGGCC
. : . : . : . : . : . :
rJMSF015L06+ AACTCCCTCTACTCCATAACCTCCGCCGGCGCCAGTTACCTGAGCGTGGTGTTAGTGAAC
rJMFF036O04+ AACTCCCTCTACTCCATAACCTCCGCCGGCGCCAGTTACCTGAGCGTGGTGTTAGTGAAC
rJMFF040O09+ AACTCCCTCTACTCCATAACCTCCGCCGGCGCCAGTTACCTGAGCGTGGTGTTAGTGAAC
rJMSF017P08+ AACTCCCTCTACTCCATAACCTCCGCCGGCGCCAGTTACCTGAGCGTGGTGTTAGTGAAC
____________________________________________________________
consensus AACTCCCTCTACTCCATAACCTCCGCCGGCGCCAGTTACCTGAGCGTGGTGTTAGTGAAC
. : . : . : . : . : . :
rJMSF015L06+ GTGGTGCACAAAACCACCGCTCACGGCGGCCGGCCCGATTGGTTGACCAAAAACGTCAAC
rJMFF036O04+ GTGGTGCACAAAACCACCGCTCACGGCGGCCGGCCCGATTGGTTGACCAAAAACGTCAAC
rJMFF040O09+ GTGGTGCACAAAACCACCGCTCACGGCGGCCGGCCCGATTGGTTGACCAAAAACGTCAAC
rJMSF017P08+ GTGGTGCACAAAACCACCGCTCACGGCGGCCGGCCCGATTGGTTGACCAAAAACGTCAAC
____________________________________________________________
consensus GTGGTGCACAAAACCACCGCTCACGGCGGCCGGCCCGATTGGTTGACCAAAAACGTCAAC
. : . : . : . : . : . :
rJMSF015L06+ GCCGGAAAACTGGAGAATTACTACTTGGTGATTGCGGGTTTGGGAGTGGTGAATTTGGGA
rJMFF036O04+ GCCGGAAAACTGG-GAATTACTACTTGGTGATTGCGGGTTTGGGAGTGGTGAATTTGGGA
rJMFF040O09+ GCCGGAAAACTGG-GAATTACTACTTGGTGATTGCGGGTTTGGGAGTGGTGAATTTGGGA
rJMSF017P08+ GCCGGAAAACTGGAGAATTACTACTTGGTGATTGCGGGTTTGGGAGTGGTGAATTTGGGA
____________________________________________________________
consensus GCCGGAAAACTGGAGAATTACTACTTGGTGATTGCGGGTTTGGGAGTGGTGAATTTGGGA
. : . : . : . : . : . :
rJMSF015L06+ TATTTTGTGTACGTTTCTCGGGGCTATCATTACAAGAGCAGAGTGAGAATTGAGGAGGAC
rJMFF036O04+ TATTTTGTGTACGTTTCTCGGGGCTATCATTACAAGAGCAGAGTGAGAATTGAGGAGGAC
rJMFF040O09+ TATTTTGTGTACGTTTCTCGGGGCTATCATTACAAGAGCAGAGTGAGAATTGAGGAGGAC
rJMSF017P08+ TATTTTGTGTACGTTTCTCGGGGCTATCATTACAAGAGCAGAGTGAGAATTGAGGAGGAC
____________________________________________________________
consensus TATTTTGTGTACGTTTCTCGGGGCTATCATTACAAGAGCAGAGTGAGAATTGAGGAGGAC
. : . : . : . : . : . :
rJMSF015L06+ GATAATCAAAAGCCATTCATTAATGATATTGAGCTTAACAGGAATGTGAATAGTAAAGAA
rJMFF036O04+ GATAATCAAAAGCCATTCATTAATGATATTGAGCTTAACAGGAATGTGAATAGTAAAGAA
rJMFF040O09+ GATAATCAAAAGCCATTCATTAATGATATTGAGCTTAACAGGAATGTGAATAGTAAAGAA
rJMSF017P08+ GATAATCAAAAGCCATTCATTAATGATATTGAGCTTAACAGGAATGTGAATAGTAAAGAA
____________________________________________________________
consensus GATAATCAAAAGCCATTCATTAATGATATTGAGCTTAACAGGAATGTGAATAGTAAAGAA
. : . : . : . : . : . :
rJMSF015L06+ TAAAAGTGTAAAATCACTTCCGATGTGGAGTGGTACTGTAGTAGTAGTAAAGGGTGAAAG
rJMFF036O04+ TAAAAGTGTAAAATCACTTCCGATGTGGAGTGGTACTGTAGTAGTAGTAAAGGGTGAAAG
rJMFF040O09+ TAAAAGTGTAAAATCACTTCCGATGTGGAGTGGTACTGTAGTAGTAGTAAAGGGTGAAAG
rJMSF017P08+ TAAAAGTGTAAAATCACTTCCGATGTGGAGTGGTACTGTAGTAGTAGTAAAGGGTGAAAG
____________________________________________________________
consensus TAAAAGTGTAAAATCACTTCCGATGTGGAGTGGTACTGTAGTAGTAGTAAAGGGTGAAAG
. : . : . : . : . : . :
rJMSF015L06+ TGTAAAATAATTTAAGACATTAGCATATCCTAT
rJMFF036O04+ TGTAAAATAATTTAAGACATTAGCATATCCTATTATCTATCTACAATCC
rJMFF040O09+ TGTAAAATAATTTAAGACATTAGCATATCCTATTATCTATCTACAATCC
rJMSF017P08+ TGTAAAATAATTTAAGACATTAGCATATCCTATTATCTATCTACAATCCTGAGCCAATAA
____________________________________________________________
consensus TGTAAAATAATTTAAGACATTAGCATATCCTATTATCTATCTACAATCCTGAGCCAATAA