Contig 001336:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017J10Sequence511003634 (2)gb|AAV88066.1|1e-06NBS-LRR protein [Ipomoea batatas]687001336 (2)gb|AAL47004.1|AF448811_12e-89unknown [Davidia involucrata]
JMSF028J15Sequence673007626 (10)ref|XP_009611467.1|6e-64PREDICTED: CSC1-like protein ERD4 isoform X1 [Nicotiana tomentosiformis]690001336 (2)ref|XP_004244862.1|3e-121PREDICTED: CSC1-like protein ERD4 [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF028J15+                                                        TCTTATCCAAGGCC
                      ____________________________________________________________
consensus                                                           TCTTATCCAAGGCC
 
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rJMSF028J15+          GAGGGCATTCCTTCAGAAAGCCACGCAGTGAGGGCTGCTTCCGGGAAGTATTTTTATTTT
                      ____________________________________________________________
consensus             GAGGGCATTCCTTCAGAAAGCCACGCAGTGAGGGCTGCTTCCGGGAAGTATTTTTATTTT
 
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rJMSF028J15+          ACAGTGCTGAATGTTTTCATTGGCGTCACGATTGGTTCCACGCTTTTCGATACATTGAAG
                      ____________________________________________________________
consensus             ACAGTGCTGAATGTTTTCATTGGCGTCACGATTGGTTCCACGCTTTTCGATACATTGAAG
 
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rJMSF028J15+          TCAATTGAGGATAACCCCAACAGTATAATTTCTTTGCTGGCAACAAGTCTCCCCAGCAGT
                      ____________________________________________________________
consensus             TCAATTGAGGATAACCCCAACAGTATAATTTCTTTGCTGGCAACAAGTCTCCCCAGCAGT
 
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rJMSF028J15+          GCAACCTTCTTCCTGACTTTTGTGGCTCTAAAGTTCTTTGTTGGCTATGGTCTCGAGCTG
                      ____________________________________________________________
consensus             GCAACCTTCTTCCTGACTTTTGTGGCTCTAAAGTTCTTTGTTGGCTATGGTCTCGAGCTG
 
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rJMSF028J15+          TCGAGAATAGTTCCTCTAATAATCTTCCATCTAAAGAAGAAGTACATGTGCAAAACTGAT
                      ____________________________________________________________
consensus             TCGAGAATAGTTCCTCTAATAATCTTCCATCTAAAGAAGAAGTACATGTGCAAAACTGAT
 
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rJMSF028J15+          GCCGAGATAAAGGAAGCCTGGGCTCCTGGAGATCTAGGATATGCAACTCGATTTCCTGGT
rJMSF017J10+                                           CTAGGATATGCAACTCGATTTCCTGGT
                      ____________________________________________________________
consensus             GCCGAGATAAAGGAAGCCTGGGCTCCTGGAGATCTAGGATATGCAACTCGATTTCCTGGT
 
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rJMSF028J15+          GACATGCTGGTTCTCATCATTTGTCTTTGTTACTCAGTCATTGCTCCAATCATTATTCCA
rJMSF017J10+          GACATGCTGGTTCTCATCATTTGTCTTTGTTACTCAGTCATTGCTCCAATCATTATTCCA
                      ____________________________________________________________
consensus             GACATGCTGGTTCTCATCATTTGTCTTTGTTACTCAGTCATTGCTCCAATCATTATTCCA
 
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rJMSF028J15+          TTTGGGGCGGTTTACTTCGGCTTGGGATGGCTTCTTCTTCGCAATCAGGCACTGAAAGTG
rJMSF017J10+          TTTGGGGCGGTTTACTTCGGCTTGGGATGGCTTCTTCTTCGCAATCAGGCACTGAAAGTG
                      ____________________________________________________________
consensus             TTTGGGGCGGTTTACTTCGGCTTGGGATGGCTTCTTCTTCGCAATCAGGCACTGAAAGTG
 
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rJMSF028J15+          TACGTTCCATCGTTCGAGAGCTACGGGAAGATGTGGCCGCATATGCACACTCGGGTGGTG
rJMSF017J10+          TACGTTCCATCGTTCGAGAGCTACGGGAAGATGTGGCCGCATATGCACACTCGGGTGGTG
                      ____________________________________________________________
consensus             TACGTTCCATCGTTCGAGAGCTACGGGAAGATGTGGCCGCATATGCACACTCGGGTGGTG
 
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rJMSF028J15+          GCTGCCTTGATTCTGTATCAGCTGACGATGATCGGTTATTTTGGGGTGAAGAAGTTTCCC
rJMSF017J10+          GCTGCCTTGATTCTGTATCAGCTGACGATGATCGGTTATTTTGGGGTGAAGAAGTTTCCC
                      ____________________________________________________________
consensus             GCTGCCTTGATTCTGTATCAGCTGACGATGATCGGTTATTTTGGGGTGAAGAAGTTTCCC
 
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rJMSF028J15+          TATGCCCCACTCGTCATCCCGCTTCCAATACTGTCCTTCCTCTTCGCCTTTGTGTGCAGT
rJMSF017J10+          TATGCCCCACTCGTCATCCCGCTTCCAATACTGTCCTTCCTCTTCGCCTTTGTGTGCAGT
                      ____________________________________________________________
consensus             TATGCCCCACTCGTCATCCCGCTTCCAATACTGTCCTTCCTCTTCGCCTTTGTGTGCAGT
 
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rJMSF028J15+          AAGAAATTCTACCGAT                                            
rJMSF017J10+          AAGAAATTCTACCGATTCTTCCAAAGCACAGCCCTGGAAGCAGTTTCTGCAGGCAAAGAA
                      ____________________________________________________________
consensus             AAGAAATTCTACCGATTCTTCCAAAGCACAGCCCTGGAAGCAGTTTCTGCAGGCAAAGAA
 
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rJMSF017J10+          AAAAAAGAAGTTCCCAACATGGATATCATCTTCAGGTCCTTCATCCCCCCATGCTTTGGT
                      ____________________________________________________________
consensus             AAAAAAGAAGTTCCCAACATGGATATCATCTTCAGGTCCTTCATCCCCCCATGCTTTGGT
 
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rJMSF017J10+          ACTGAGAAGTCCGACGAAGATCACTTCGAAGATGCTTTGTCCCAAGTTTCGAGATCAGCT
                      ____________________________________________________________
consensus             ACTGAGAAGTCCGACGAAGATCACTTCGAAGATGCTTTGTCCCAAGTTTCGAGATCAGCT
 
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rJMSF017J10+          TCCAATGTCTGATTACATCAATTTGTTTCTGTATGTTTCCATGGTGTGTGTTCACATTAT
                      ____________________________________________________________
consensus             TCCAATGTCTGATTACATCAATTTGTTTCTGTATGTTTCCATGGTGTGTGTTCACATTAT
 
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rJMSF017J10+          GTTCCTCAAAAACTGTTGGTTGGTCTATTCATGGTTTCTTGTGAATACATTAGTTGATAG
                      ____________________________________________________________
consensus             GTTCCTCAAAAACTGTTGGTTGGTCTATTCATGGTTTCTTGTGAATACATTAGTTGATAG
 
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rJMSF017J10+          TGCAGGGGGTTTGTCAATATCAATATATCATCGTGGATCAGCATATAATATATTCTGTAC
                      ____________________________________________________________
consensus             TGCAGGGGGTTTGTCAATATCAATATATCATCGTGGATCAGCATATAATATATTCTGTAC