Contig 001334:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017F17+                                           AAGAATGATTTCAGAGATTCGGTGGGT
                      ____________________________________________________________
consensus                                              AAGAATGATTTCAGAGATTCGGTGGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002C23+                                                   TACAAAGCNGAGGAGACTA
rJMSF017F17+          TAGAGAATCAGTCTGTTCAAGAACTGGAGAACTATGCTGTCTACAAAGCCGAGGAGACTA
                      ____________________________________________________________
consensus             TAGAGAATCAGTCTGTTCAAGAACTGGAGAACTATGCTGTCTACAAAGCCGAGGAGACTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002C23+          CAAACGCTGTTAATGGGTGTCTGAAGATTGCAGAAGACATGAGGGAGGATGCAACTAAGA
rJMSF017F17+          CAAACGCTGTTAATGGGTGTCTGAAGATTGCAGAAGACATGAGGGAGGATGCAACTAAGA
                      ____________________________________________________________
consensus             CAAACGCTGTTAATGGGTGTCTGAAGATTGCAGAAGACATGAGGGAGGATGCAACTAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002C23+          CTTTAGTCACTCTACATCATCAGGGCGAGCAAATTACTAGGACTCATATGACTGCAGCTG
rJMSF017F17+          CTTTAGTCACTCTACATCATCAGGGCGAGCAAATTACTAGGACTCATATGACTGCAGCTG
                      ____________________________________________________________
consensus             CTTTAGTCACTCTACATCATCAGGGCGAGCAAATTACTAGGACTCATATGACTGCAGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002C23+          ACATTGACCATGATCTTAGTCGGGGTGAGAAACTTTTGGGAAGTCTCGGAGGCATATTTT
rJMSF017F17+          ACATTGACCATGATCTTAGTCGGGGTGAGAAACTTTTGGGAAGTCTCGGAGGCATATTTT
                      ____________________________________________________________
consensus             ACATTGACCATGATCTTAGTCGGGGTGAGAAACTTTTGGGAAGTCTCGGAGGCATATTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002C23+          CGAAGACATGGAAGCCTAAGAAGACTCGTCCAATTTCAGGCCCTGTTATTACAAGAGATG
rJMSF017F17+          CGAAGACATGGAAGCCTAAGAAGACTCGTCCAATTTCAGGCCCTGTTATTACAAGAGATG
                      ____________________________________________________________
consensus             CGAAGACATGGAAGCCTAAGAAGACTCGTCCAATTTCAGGCCCTGTTATTACAAGAGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002C23+          ACCCAGTTCAAAGGAGGGGTAACCATTTGGAGCAGAGGGAAAAATTGGGATTGAATTCTG
rJMSF017F17+          ACCCAGTTCAAAGGAGGGGTAACCATTTGGAGCAGAGGGAAAAATTGGGATTGAATTCTG
                      ____________________________________________________________
consensus             ACCCAGTTCAAAGGAGGGGTAACCATTTGGAGCAGAGGGAAAAATTGGGATTGAATTCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002C23+          CACCCAAGGGGCGGTCAAGCAGCCGAACTCCTCCTCCTGAACCAACTAATGCACTGCAGA
rJMSF017F17+          CACCCAAGGGGCGGTCAAGCAGCCGAACTCCTCCTCCTGAACCAACTAATGCACTGCAGA
                      ____________________________________________________________
consensus             CACCCAAGGGGCGGTCAAGCAGCCGAACTCCTCCTCCTGAACCAACTAATGCACTGCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002C23+          AAGTCGAGGCGGAGAAGGCAAAGCAAGACGATGGGCTATCAGATCTTAGTAATATCCTGG
rJMSF017F17+          AAGTCGAGGCGGAGAAGGCAAAGCAAGACGATGGGCTATCAGATCTTAGTAATATCCTGG
                      ____________________________________________________________
consensus             AAGTCGAGGCGGAGAAGGCAAAGCAAGACGATGGGCTATCAGATCTTAGTAATATCCTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002C23+          GGGAGCTCAAGGGCATGGCACTTGACATGGGCGCTGAAATTGAAAGGCAAAACCATGCTA
rJMSF017F17+          GGGAGCTCAAGGGCATGGCACTTGACATGGGCGCTGAAATTGAAANGCAAAACCATGCTA
                      ____________________________________________________________
consensus             GGGAGCTCAAGGGCATGGCACTTGACATGGGCGCTGAAATTGAAAGGCAAAACCATGCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002C23+          TGGATCATCTTCAGGATGACATTATAGAGCTCGATTCCAGAGTTAAAGGGGCTAACCAAC
rJMSF017F17+          TGGATCATCTTCAGGATGACATTATAGAGCTCGATTCCAGAGTTAAAGGGGCTAACCAAC
                      ____________________________________________________________
consensus             TGGATCATCTTCAGGATGACATTATAGAGCTCGATTCCAGAGTTAAAGGGGCTAACCAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002C23+          GAGGCCGACGTTTGCTTGGAAAGTAGAGCCATTGTTCGTTCTGGGATCAAGATTTCAAAT
rJMSF017F17+          GAGGCCGACGTTTGCTTGGAAAGTAGAGCCATTGTTCGTTCTGGGATCAAGATTTCAAAT
                      ____________________________________________________________
consensus             GAGGCCGACGTTTGCTTGGAAAGTAGAGCCATTGTTCGTTCTGGGATCAAGATTTCAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002C23+          TACTAGATTTCCGGGTCGATAGATCATCTTCTTGTTCCACCATTGTTTGTACTGTGAACC
rJMSF017F17+          TACTAGATTTCCGGGTCGATAGATCATCTTCTTGTTCCACCATTGTTTGTACTGTGAACC
                      ____________________________________________________________
consensus             TACTAGATTTCCGGGTCGATAGATCATCTTCTTGTTCCACCATTGTTTGTACTGTGAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002C23+          AGCTCTTTCTACATTAACAGCATCAAAATGCCAACTTTAATT                  
rJMSF017F17+          AGCTCTTTCTACATTAACAGCATCAAAATGCCAACTTTAATTTGTGAATCTATATATGTG
                      ____________________________________________________________
consensus             AGCTCTTTCTACATTAACAGCATCAAAATGCCAACTTTAATTTGTGAATCTATATATGTG