Contig 001324:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011J04Sequence595013227 (4)ref|XP_006357501.1|1e-24PREDICTED: probable protein phosphatase 2C 52-like [Solanum tuberosum]779001324 (4)ref|XP_006357501.1|1e-124PREDICTED: probable protein phosphatase 2C 52-like [Solanum tuberosum]
JMFF039E18Sequence765001324 (4)ref|XP_006357501.1|9e-109PREDICTED: probable protein phosphatase 2C 52-like [Solanum tuberosum]
JMSF005E01Sequence414013227 (4)207001324 (4)ref|XP_009619304.1|1e-06PREDICTED: probable protein phosphatase 2C 52 [Nicotiana tomentosiformis] ref|XP
JMSF015I24Sequence347013227 (4)787001324 (4)ref|XP_009776219.1|2e-63PREDICTED: probable protein phosphatase 2C 52 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF039E18+                                                               TGCAAGA
rJMFF011J04+                                                          TGCATTGCAAGA
                      ____________________________________________________________
consensus                                                             TGCATTGCAAGA
 
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rJMFF039E18+          TGAGCCCGAAGTGCAGAGGGTTTGGCTGCCATTTGATAATGCCCCTGGGGTTAGCTATGG
rJMFF011J04+          TGAGCCCGAAGTGCAGAGGGTTTGGCTGCCATTTGATAATGCCCCT-GGGTTAGCTATGG
                      ____________________________________________________________
consensus             TGAGCCCGAAGTGCAGAGGGTTTGGCTGCCATTTGATAATGCCCCTGGGGTTAGCTATGG
 
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rJMFF039E18+          CTCGAGCATTTGGGGATTTTTGTCTGAAGGAATATGGAGTTATCTCTATTCCTGAAGTTT
rJMFF011J04+          CTCGAGCATTTGGGGATTTTTGTCTGAAGGAATATGGAGTTATCTCTATTCCTGAAGTTT
                      ____________________________________________________________
consensus             CTCGAGCATTTGGGGATTTTTGTCTGAAGGAATATGGAGTTATCTCTATTCCTGAAGTTT
 
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rJMFF039E18+          CTCATCGTGTTCTTACTGATCGGGATAAGTTCATTGTTCTTGCTTCTGATGGTGTATGGG
rJMFF011J04+          CTCATCGTGTTCTTACTGATCGGGATAAGTTCATTGTTCTTGCTTCTGATGGTGTATGGG
                      ____________________________________________________________
consensus             CTCATCGTGTTCTTACTGATCGGGATAAGTTCATTGTTCTTGCTTCTGATGGTGTATGGG
 
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rJMFF039E18+          ATGTTCTGAGCAATGAAGAAGTGGTTGAAATTGTGTCGGGAGCTCCTTCGAGGTCATCTG
rJMFF011J04+          ATGTTCTGAGCAATGAAGAAGTGGTTGAAATTGTGTCGGGAGCTCCTTCGAGGTCATCTG
rJMSF015I24+                                                               TCATCTG
                      ____________________________________________________________
consensus             ATGTTCTGAGCAATGAAGAAGTGGTTGAAATTGTGTCGGGAGCTCCTTCGAGGTCATCTG
 
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rJMFF039E18+          CAGCAAGAACAGTAGTCGAGTCTGCAGCACGTGAATGGAAGACCAAATACCCGACGTCCA
rJMFF011J04+          CAGCAAGAACAGTAGTCGAGTCTGCAGCACGTGAATGGAAGACCAAATACCCGACGTCCA
rJMSF015I24+          CAGCAAGAACAGTAGTCGAGTCGGCAGCACGTGAATGGAAGACCAAATACCCGACGTCCA
                      ____________________________________________________________
consensus             CAGCAAGAACAGTAGTCGAGTCTGCAGCACGTGAATGGAAGACCAAATACCCGACGTCCA
 
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rJMFF039E18+          AGATGGACGATTGTGCAGTTGTTTGCTTGTTCTTGGATGGGAAGATGGACTCGGAATCCG
rJMFF011J04+          AGATGGACGATTGTGCAGTTGTTTGCTTGTTCTTGGATGGGAAGATGGACTCGGAATCCG
rJMSF015I24+          AGATGGACGATTGTGCAGTTGTTTGCTTGTTCTTGGATGGGAAGATGGACTCGGAATCCG
                      ____________________________________________________________
consensus             AGATGGACGATTGTGCAGTTGTTTGCTTGTTCTTGGATGGGAAGATGGACTCGGAATCCG
 
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rJMFF039E18+          ACTACGAAGAACAAGGTTTCTCGTCTGCCACGATTCAGAGCAACCATTCTGGCAACGTTG
rJMFF011J04+          ACTACGAAGAACAAGGTTTCTCGTCTGCCACGATTCAGAGCAACCATTCTGGCAACGTTG
rJMSF015I24+          ACTACGAAGAACAAGGTTTCTCGTCTGCCACGATTCAGAGCAACCATTCTGGCAACGTTG
                      ____________________________________________________________
consensus             ACTACGAAGAACAAGGTTTCTCGTCTGCCACGATTCAGAGCAACCATTCTGGCAACGTTG
 
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rJMFF039E18+          CAGAATCGGACGATGGACAGAACATCATCGAACCGTCCCTGCAGAGAAACTGTACTGTCC
rJMFF011J04+          CAGAATCGGACGATGGACAGAACATCATCGAACCGTCCCTGCAGAGAAACTGTACTGTCC
rJMSF015I24+          CAGAATCGGACGATGGACAGAACATCATCGAACCGTCCCTGCAGAGAAACTGTACTGTCC
                      ____________________________________________________________
consensus             CAGAATCGGACGATGGACAGAACATCATCGAACCGTCCCTGCAGAGAAACTGTACTGTCC
 
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rJMFF039E18+          GATCAGCAGAAGAGAACGAGGCATACAAAATAATAGTAGCAGATACGCAAACAAATGAAG
rJMFF011J04+          GATCAGCAGAAGAGAACGAGGCATACAAAATAATAGTAGCAGATACGCAAACAAATGAAG
rJMSF015I24+          GATCAGCAGAAGAGAACGAGGCATACAAAATAATAGTAGCAGATACGCAAACAAATGAAG
                      ____________________________________________________________
consensus             GATCAGCAGAAGAGAACGAGGCATACAAAATAATAGTAGCAGATACGCAAACAAATGAAG
 
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rJMFF039E18+          AACCTGTTGAAGGAGAAACCCAGAATTGGTCGGGATTGGAAGGCGTCACGCGTGTCAACT
rJMFF011J04+          AACCTGTTGAAGGAGAAACCCAGAATTGGTCGGGATTGGAAGGCGTCACGCGTGTCAACT
rJMSF005E01+                                GAATTGGTCGGGATTGGAAGGCGTCACGCGTGTCAACT
rJMSF015I24+          AACCTGTTGAAGGAGAAACCCAGAATTGGTCGGGATTGGAAGGCGTCACGCGTGTCAACT
                      ____________________________________________________________
consensus             AACCTGTTGAAGGAGAAACCCAGAATTGGTCGGGATTGGAAGGCGTCACGCGTGTCAACT
 
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rJMFF039E18+          CCTTGGTTCAACTCCCCAGATTTTCCGGTGAGAGGCAAAGGCCTTAACTTTTTTCGTTTG
rJMFF011J04+          CCTTGGTTCAACTCCCCAGATTTTCCGGTGAGAGGCAAAGGCCTTAACTTTTTTCGTTTG
rJMSF005E01+          CCTTGGTTCAACTCCCCAGATTTTCCGNTGAGAGGCAAAGGCCTTAACTTTTTTCGTNTG
rJMSF015I24+          CCTTGGTTCAACTCCCCAGATTTTCCGGTGAGAGGCAAAGGCCTTAACTTTTTTCGTTTG
                      ____________________________________________________________
consensus             CCTTGGTTCAACTCCCCAGATTTTCCGGTGAGAGGCAAAGGCCTTAACTTTTTTCGTTTG
 
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rJMFF039E18+          GAACATATAATGCCATCTGTCTCACAAGTCGTTCTTGCAGCATTCCACTTTCATTGTTCT
rJMFF011J04+          GAACATATAATGCCATCTGTCTCACAAGTCGTTCTTGCAGCATTCCACTTTCATTGTTCT
rJMSF005E01+          GAACATATAATGCCATNTGTCTCACAAGTCGTTCNNGCAGCATTCCACTTTCATTGTTCT
rJMSF015I24+          GAACATATAATGCCATCTGTCTCACAAGTCGTTCTTGCAGCATTCCACTTTCATTGTTCT
                      ____________________________________________________________
consensus             GAACATATAATGCCATCTGTCTCACAAGTCGTTCTTGCAGCATTCCACTTTCATTGTTCT
 
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rJMFF039E18+          TGCTACAATTAGTCAGTTTTCTTGCAGTAATCTCAATT                      
rJMFF011J04+          TGCTACAATTAGTCAGTTTTCTTGCAGTAATCTCAATTGTACATTCCA            
rJMSF005E01+          TGCTACAATTAGTCAGTTTTCT                                      
rJMSF015I24+          TGCTACAATTAGTCAGTTTTCTTGCAGTAATCTCAATTGTACATTCCATTTTCATGAAGT
                      ____________________________________________________________
consensus             TGCTACAATTAGTCAGTTTTCTTGCAGTAATCTCAATTGTACATTCCATTTTCATGAAGT
 
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rJMSF015I24+          ATTAGTGTATATACTGTAACATTATGCATGGTGAACAGTAGGGTAATGCTTCTTGTGTTA
                      ____________________________________________________________
consensus             ATTAGTGTATATACTGTAACATTATGCATGGTGAACAGTAGGGTAATGCTTCTTGTGTTA
 
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rJMSF015I24+          AGTGCATGGTTTTGTGCTGGGGTTTTTGCTTTTACTTGGAAAAATTGCTTACTGCTCTGC
                      ____________________________________________________________
consensus             AGTGCATGGTTTTGTGCTGGGGTTTTTGCTTTTACTTGGAAAAATTGCTTACTGCTCTGC
 
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rJMSF015I24+          AAGAGTGGTTGGATTTGCAGAATTTCTGCAGTTTGAAACTCAATGTTCAGGTTGCAAGAT
                      ____________________________________________________________
consensus             AAGAGTGGTTGGATTTGCAGAATTTCTGCAGTTTGAAACTCAATGTTCAGGTTGCAAGAT
 
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rJMSF015I24+          TTAGTATCTGAAATACTTCTCTTGAGAAGAAGAGAACATGAAACCAATGTGCTGGAAGTT
                      ____________________________________________________________
consensus             TTAGTATCTGAAATACTTCTCTTGAGAAGAAGAGAACATGAAACCAATGTGCTGGAAGTT