Contig 001323:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN011L02Sequence357001323 (2)
JMSF015E19Sequence247019954ref|XP_009624146.1|8e-45PREDICTED: L-arabinokinase-like [Nicotiana tomentosiformis]734001323 (2)ref|XP_009612838.1|3e-103PREDICTED: L-arabinokinase-like isoform X1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFN011L02+              CAAACAAGATGTATATGTAGCAAAATTTCGTCTATCAAGATTGAAACAATATCATTA
                      ____________________________________________________________
consensus                CAAACAAGATGTATATGTAGCAAAATTTCGTCTATCAAGATTGAAACAATATCATTA
 
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JMFN011L02+           TGGCATATTACAATATTTGAATAAATTGGACTCAAAATTTAATTXXXXXXXXXXXXXXXX
                      ____________________________________________________________
consensus             TGGCATATTACAATATTTGAATAAATTGGACTCAAAATTTAATTNNNNNNNNNNNNNNNN
 
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JMFN011L02+           XXGAAGAATCATGCCTACTACATATTTTATTGCTTCTCTTCACTGAAAGTTGACAATCAT
rJMSF015E19-                                                        AAGTTGACAATCAT
                      ____________________________________________________________
consensus             NNGAAGAATCATGCCTACTACATATTTTATTGCTTCTCTTCACTGAAAGTTGACAATCAT
 
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JMFN011L02+           AATTTTCATTCTATATTATTGCTTACGTGTAATGCGAAGCATTCACTAGATACTAATATG
rJMSF015E19-          AATTTTCATTCTATATTATTGCTTACGTGTAATGCGAAGCATTCACTAGATACTAATATG
                      ____________________________________________________________
consensus             AATTTTCATTCTATATTATTGCTTACGTGTAATGCGAAGCATTCACTAGATACTAATATG
 
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JMFN011L02+           TATGTATACATCCTATACTATAAATTAATATCCTAGCAGGTAGGTCTTTTACACTAAATA
rJMSF015E19-          TATGTATACATCCTATACTATAAATTAATATCCTAGCAGGTAGGTCTTTTACACTAAATA
                      ____________________________________________________________
consensus             TATGTATACATCCTATACTATAAATTAATATCCTAGCAGGTAGGTCTTTTACACTAAATA
 
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JMFN011L02+           AATGGTGGGTGAACCGAGCCAAATCAGGTTTGGTGGGAAGGGATGCGGCGGCGAATTCTT
rJMSF015E19-          AATGGTGGGTGAACCGAGCCAAATCAGGTTTGGTGGGAAGGGATGCGGCGGCGAATTCTT
                      ____________________________________________________________
consensus             AATGGTGGGTGAACCGAGCCAAATCAGGTTTGGTGGGAAGGGATGCGGCGGCGAATTCTT
 
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rJMSF015E19-          AGATACCCAAACTTTCCGGCACCAGGAGATGAACCTTCAAAGATAATTGGCAAATACCCA
                      ____________________________________________________________
consensus             AGATACCCAAACTTTCCGGCACCAGGAGATGAACCTTCAAAGATAATTGGCAAATACCCA
 
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rJMSF015E19-          GTTGCTGCTTTGTATCTTCGCTGAATCTCAAGAATCTTTTCGCTGCTGCGCAGAGAATTT
                      ____________________________________________________________
consensus             GTTGCTGCTTTGTATCTTCGCTGAATCTCAAGAATCTTTTCGCTGCTGCGCAGAGAATTT
 
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rJMSF015E19-          CTGCCAATTACACAAACAGTTCCACCAGATCCTCCGCCCGTGATTTTTGCACCATATAAA
                      ____________________________________________________________
consensus             CTGCCAATTACACAAACAGTTCCACCAGATCCTCCGCCCGTGATTTTTGCACCATATAAA
 
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rJMSF015E19-          GTCCCTTCAGCAGATTTTGATGCCTTAACATGCTGCACTTCTTGTACTAGCTGAACGAGC
                      ____________________________________________________________
consensus             GTCCCTTCAGCAGATTTTGATGCCTTAACATGCTGCACTTCTTGTACTAGCTGAACGAGC
 
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rJMSF015E19-          CTATTTGTTCCATCTGACCCTAGTCCACATGCACTGTAACTATAGTGGCACTGATACAAT
                      ____________________________________________________________
consensus             CTATTTGTTCCATCTGACCCTAGTCCACATGCACTGTAACTATAGTGGCACTGATACAAT
 
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rJMSF015E19-          AGTTCTCCAAGAGAAGAAAGCTGATCATCTGAAGTTGCAGATGTTAGCAATGCTTTAAAG
                      ____________________________________________________________
consensus             AGTTCTCCAAGAGAAGAAAGCTGATCATCTGAAGTTGCAGATGTTAGCAATGCTTTAAAG
 
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rJMSF015E19-          GCCTGCACACGAAAGTTCTCATATATAGGGTGTCTGGTAGCCGCCCTGACTCCATAGTTA
                      ____________________________________________________________
consensus             GCCTGCACACGAAAGTTCTCATATATAGGGTGTCTGGTAGCCGCCCTGACTCCATAGTTA
 
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rJMSF015E19-          CGTGTCTTGTCAATTACAGTGACAGGATCATGATGGTTTGCATATTTTTCAAGGAATGCA
                      ____________________________________________________________
consensus             CGTGTCTTGTCAATTACAGTGACAGGATCATGATGGTTTGCATATTTTTCAAGGAATGCA
 
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rJMSF015E19-          TCACCAAACATAGATTCGGGTAGCATTTTTCCATAAAGGGCTTCGTATCTGTGTGGAGAA
                      ____________________________________________________________
consensus             TCACCAAACATAGATTCGGGTAGCATTTTTCCATAAAGGGCTTCGTATCTGTGTGGAGAA