| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF008I06 | Sequence | 344 | 001321 (4) | ref|XP_006365470.1| | 1e-23 | PREDICTED: chaperone protein dnaJ 20, chloroplastic-like [Solanum tuberosum] | 749 | 001321 (4) | ref|XP_009594586.1| | 1e-78 | PREDICTED: chaperone protein dnaJ 20, chloroplastic-like [Nicotiana tomentosifo |
| JMSF015B24 | Sequence | 232 | 001321 (4) | 739 | 001321 (4) | ref|XP_009594586.1| | 3e-78 | PREDICTED: chaperone protein dnaJ 20, chloroplastic-like [Nicotiana tomentosifo | |||
This contig is upended
. : . : . : . : . : . :
JMSF015B24- GAGAGATTCACAAAATCTGT
JMSF008I06- GAGATTCACAAAATCTGT
____________________________________________________________
consensus GAGAGATTCACAAAATCTGT
. : . : . : . : . : . :
JMSF015B24- AGAGATATAGAGAGAGAGAAGAGAGAGAGAGAAACAATGTGCTGCAACTCCCATGGATTA
JMSF008I06- AGAGATATAGAGAGAGAGAAGAGAGAGAGAGAAACAATGTGCTGCAACTCCCATGGATTA
____________________________________________________________
consensus AGAGATATAGAGAGAGAGAAGAGAGAGAGAGAAACAATGTGCTGCAACTCCCATGGATTA
. : . : . : . : . : . :
JMSF015B24- ACACTCTCAAGAAGCGACCCTCGCTTCTCCTACCTCTCCATCATTCACTCTCCCCGACCC
JMSF008I06- ACACTCTCAAGAAGCGACCCTCGCTTCTCCTACCTCTCCATCATTCACTCTCCCCGACCC
rJMSF008I06+ CCATCATTCACTCTCCCCGACCC
____________________________________________________________
consensus ACACTCTCAAGAAGCGACCCTCGCTTCTCCTACCTCTCCATCATTCACTCTCCCCGACCC
. : . : . : . : . : . :
JMSF015B24- GACCCACGCCGCGCGCTGTTCTTCCCCGTCCGCCTCCGAGTCCGGACCGGCAGAATCAAG
JMSF008I06- GACCCACGCCGCGCGCTGTTCTTCCCCGTCCGCCTCCGAGTCCGGACCGGCAGAATCAAG
rJMSF008I06+ GACCCACGCCGCGCGCTGTTCTTCCCCGTCCGCCTCCGAGTCCGGACCGGCAGAATCAAG
rJMSF015B24+ CCGGACCGGCAGAATCAAG
____________________________________________________________
consensus GACCCACGCCGCGCGCTGTTCTTCCCCGTCCGCCTCCGAGTCCGGACCGGCAGAATCAAG
. : . : . : . : . : . :
JMSF015B24- TCCAAGCTCAACGACGCCGTTTCGGTCGCCGA
JMSF008I06- TCCAAGCTCAACGACGCCGTTTCGGTCGCCGAGCCCAAGTCCTTCTACGACCTTCTGGGC
rJMSF008I06+ TCCAAGCTCAACGACGCCGTTTCGGTCGCCGAGCCCAAGTCCTTCTACGACCTTCTGGGC
rJMSF015B24+ TCCAAGCTCAACGACGCCGTTTCGGTCGCCGAGCCCAAGTCCTTCTACGACCTTCTGGGC
____________________________________________________________
consensus TCCAAGCTCAACGACGCCGTTTCGGTCGCCGAGCCCAAGTCCTTCTACGACCTTCTGGGC
. : . : . : . : . : . :
JMSF008I06- ATATCCGTGACGGGATCGCTGCCGGAGATCAAGCAGGCGTACAAGCAGTTGGCCCGGAAG
rJMSF008I06+ ATATCCGTGACGGGATCGCTGCCGGAGATCAAGCAGGCGTACAAGCAGTTGGCCCGGAAG
rJMSF015B24+ ATATCCGTGACGGGATCGCTGCCGGAGATCAAGCAGGCGTACAAGCAGTTGGCCCGGAAG
____________________________________________________________
consensus ATATCCGTGACGGGATCGCTGCCGGAGATCAAGCAGGCGTACAAGCAGTTGGCCCGGAAG
. : . : . : . : . : . :
JMSF008I06- TACCACCCGGATGTGTCGCCTCCG
rJMSF008I06+ TACCACCCGGATGTGTCGCCTCCGGATCGGGTCGAGGAGTACACGCAGAGGTTCATCCAG
rJMSF015B24+ TACCACCCGGATGTGTCGCCTCCGGATCGGGTCGAGGAGTACACGCAGAGGTTCATCCAG
____________________________________________________________
consensus TACCACCCGGATGTGTCGCCTCCGGATCGGGTCGAGGAGTACACGCAGAGGTTCATCCAG
. : . : . : . : . : . :
rJMSF008I06+ GTCCAGGAGGCTTATGAGACCCTGTCGGATCCTAGAAGGAGAGCTTTGTACGATAGCGAT
rJMSF015B24+ GTCCAGGAGGCTTATGAGACCCTGTCGGATCCTAGAAGGAGAGCTTTGTACGATAGCGAT
____________________________________________________________
consensus GTCCAGGAGGCTTATGAGACCCTGTCGGATCCTAGAAGGAGAGCTTTGTACGATAGCGAT
. : . : . : . : . : . :
rJMSF008I06+ ATGGCTAAAGGCCTCCACTTTGCCTTCTCCGCTCGTCGACGTTGCCAAAGCGACGAGTAT
rJMSF015B24+ ATGGCTAAAGGCCTCCACTTTGCCTTCTCCGCTCGTCGACGTTGCCAAAGCGACGAGTAT
____________________________________________________________
consensus ATGGCTAAAGGCCTCCACTTTGCCTTCTCCGCTCGTCGACGTTGCCAAAGCGACGAGTAT
. : . : . : . : . : . :
rJMSF008I06+ ATGGAGGAGAAAAGCGAGTGGAAAGGTCGATGGCAGTCTCAAGTATCAGAGCTAAAGAGA
rJMSF015B24+ ATGGAGGAGAAAAGCGAGTGGAAAGGTCGATGGCAGTCTCAAGTATCAGAGCTAAAGAGA
____________________________________________________________
consensus ATGGAGGAGAAAAGCGAGTGGAAAGGTCGATGGCAGTCTCAAGTATCAGAGCTAAAGAGA
. : . : . : . : . : . :
rJMSF008I06+ AGAAGCATGCATAAAGACTCCGGTGACAATCTATCGTGGGGAGCACGAATGCGTCGGCAA
rJMSF015B24+ AGAAGCATGCATAAAGACTCCGGTGACAATCTATCGTGGGGAGCACGAATGCGTCGGCAA
____________________________________________________________
consensus AGAAGCATGCATAAAGACTCCGGTGACAATCTATCGTGGGGAGCACGAATGCGTCGGCAA
. : . : . : . : . : . :
rJMSF008I06+ AGGAACAATGAAGAAGCATCATGATAGCGCAATAAGTTCGTATGTATACATGTAGTGTAT
rJMSF015B24+ AGGAACAATGAAGAAGCATCATGATAGCGCAATAAGTTCGTATGTATACATGTAGTGTAT
____________________________________________________________
consensus AGGAACAATGAAGAAGCATCATGATAGCGCAATAAGTTCGTATGTATACATGTAGTGTAT
. : . : . : . : . : . :
rJMSF008I06+ ATATTAATCTTCCAAATAGATAGGAGACACTTTTAGGGTACCTTTTGGTTACATTTGGTT
rJMSF015B24+ ATATTAATCTTCCAAATAGATAGGAGACACTTTTAGGGTACCTTTTGGTTACATTTGGTT
____________________________________________________________
consensus ATATTAATCTTCCAAATAGATAGGAGACACTTTTAGGGTACCTTTTGGTTACATTTGGTT
. : . : . : . : . : . :
rJMSF008I06+ TGATCAAGACGAGTTGCAGTACCAACATAGTTACAACCGTGTACTGCAGTTAGATTTGCG
rJMSF015B24+ TGATCAAGACGAGTTGCAGTACCAACATAGTTACAACCGTGTACTGCAGTTAGATTTGCG
____________________________________________________________
consensus TGATCAAGACGAGTTGCAGTACCAACATAGTTACAACCGTGTACTGCAGTTAGATTTGCG
. : . : . : . : . : . :
rJMSF008I06+ TTACAGATCACCTGATGCCAACCAGCAACATAGTTGTACATAGAATTACAATAAATTGAG
rJMSF015B24+ TTACAGATCACCTGATGCCAACCAGCAACATAGTTGTACATAGAATTACAATAAATTGAG
____________________________________________________________
consensus TTACAGATCACCTGATGCCAACCAGCAACATAGTTGTACATAGAATTACAATAAATTGAG
. : . : . : . : . : . :
rJMSF008I06+ GT
rJMSF015B24+ GTTGCCTTATATGCAACTTTATATGTTTTTGCTCAAGGAATCGAATCGCCTAAGATGGTT
____________________________________________________________
consensus GTTGCCTTATATGCAACTTTATATGTTTTTGCTCAAGGAATCGAATCGCCTAAGATGGTT