Contig 001320:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018I10Sequence240003144 (3)276001320 (3)
JMFF023L06Sequence267001320 (3)
JMSF014M10Sequence110003144 (3)287001320 (3)

Alignment

This contig is upended


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rJMFF018I10+                                    TTTTTTTTTTTTTCCAGTTTTGAGTGTTGTATTT
rJMFF023L06+                                    TTTTTTTTTTTTTCCAGTTTTGAGTGTTGTATTT
rJMSF014M10+                       CNTNTNTNNCCCNTTTTTTTTTTTTTCCAGTTTTGAGTGTNGTATTT
                      ____________________________________________________________
consensus                          CNTNTNTNNCCCNTTTTTTTTTTTTTCCAGTTTTGAGTGTTGTATTT
 
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rJMFF018I10+          GTTGGATGAAGAAGAGGAACTGAGGAAGAGACGAGAGATAATCCAGTCGGTCGGGGATGC
rJMFF023L06+          GTTGGATGAAGAAGAGGAACTGAGGAAGAGACGAGAGATAATCCAGTCGGTCGGGGATGC
rJMSF014M10+          GTTGGATGAAGAAGAGGAACTGAGGAAGAGACGAGAGATAATCCAGTCGGTCGGGGATGC
                      ____________________________________________________________
consensus             GTTGGATGAAGAAGAGGAACTGAGGAAGAGACGAGAGATAATCCAGTCGGTCGGGGATGC
 
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rJMFF018I10+          ATTTTGTGTTGGAATGGTGGCTGGGAAATTCTGCCTTTCCGGCACAATAGATCATAATAA
rJMFF023L06+          ATTTTGTGTTGGAATGGTGGCTGGGAAATTCTGCCTTTCCGGCACAATAGATCATAATAA
rJMSF014M10+          ATTTTGTGTTGGAATGGTGGCTGGGAAATTCTGCCTTTCCGGCACAATAGATCATAATAA
                      ____________________________________________________________
consensus             ATTTTGTGTTGGAATGGTGGCTGGGAAATTCTGCCTTTCCGGCACAATAGATCATAATAA
 
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rJMFF018I10+          ATTGCTTGTTAGGTTCAGTCATTAGATATACTAGTTCTAATCATGCTGAACGAATGCCTT
rJMFF023L06+          ATTGCTTGTTAGGTTCAGTCATTAGATATACTAGTTCTAATCATGCTGAACGAATGCCTT
rJMSF014M10+          ATTGCTTGTTAGGTTCANTCATTAGATATACTAGTTCTAATCANNCTGAACGAATGCCTT
                      ____________________________________________________________
consensus             ATTGCTTGTTAGGTTCAGTCATTAGATATACTAGTTCTAATCATGCTGAACGAATGCCTT
 
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rJMFF018I10+          GTAATGAAACCGTGGAGGTTTCAAATCAATTGAATTCTGTAA                  
rJMFF023L06+          GTAATGANACCNTGGAGGTTTCAAATCAATTNAATTCNGTAA                  
rJMSF014M10+          GTNATGAAACCGTGGAGGTTTCAAATCAATTGAATTCTGTAATTTGTTGAAGACTCTCTT
                      ____________________________________________________________
consensus             GTAATGAAACCGTGGAGGTTTCAAATCAATTGAATTCTGTAATTTGTTGAAGACTCTCTT