Contig 001318:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFN003E24+                                                               AAAAAAAA
                      ____________________________________________________________
consensus                                                                 AAAAAAAA
 
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JMFN003E24+           AAGTTATTAATTAATATAATACCATAAAATATAACAATAATCATATCATATCATTAATAA
JMFF034F17+                                        TATAACAATAATCATATCATATCATTAATAA
JMFS076G11+                                           AACAATAATCATATCATATCATTAATAA
rJMFF034F17-                                                                   TAA
JMSF026O01+                                        TATAACAATAATCATATCATATCATTAATAA
                      ____________________________________________________________
consensus             AAGTTATTAATTAATATAATACCATAAAATATAACAATAATCATATCATATCATTAATAA
 
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JMFN003E24+           TAAGGTAATAATACAAAATAAGTAAAAATAATTAAACACTGAAGACCCTAACAGAAGATT
JMFF034F17+           TAAGGTAATAATACAAAATAAGTAAAAATAATTGAACACTGAAGACCCTAACAGAAGATT
JMFS076G11+           TAAGGTAATAATACAAAATAAGTAAAAATAATTAAACACTGAAGACCCTAACAGAAGATT
rJMFF034F17-          TAAGGTAATAATACAAAATAAGTAAAAATAATTAAACACTGAAGACCCTAACAGAAGATT
JMSF026O01+           TAAGGTAATAATACAAAATAAGTAAAAATAATTAAACACTGAAGACCCTAACAGAAGATT
rJMSF026O01-                         AAATAAGTAAAAATAATTAAACACTGAAGACCCTAACAGAAGATT
rJMSF014F09-                         AAATAAGTAAAAATAATTAAACACTGAAGACCCTAACAGAAGATT
                      ____________________________________________________________
consensus             TAAGGTAATAATACAAAATAAGTAAAAATAATTAAACACTGAAGACCCTAACAGAAGATT
 
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JMFN003E24+           AAGGCCATAAAATTCAGATAATCATATCACGCCTCTAAGCTTCCACACTCGCCGTCGCCG
JMFF034F17+           AAGGCCATAAAATTCAGATAATCATATCACGCCTCTAAGCTTCCNCACTCGCCGTCGCCG
JMFS076G11+           AAGGCCATAAAATTCAGATAATCATATCACGCCTCTAAGCTTCCACACTCGCCGTCGCCG
rJMFF034F17-          AAGGCCATAAAATTCAGATAATCATATCACGCCTCTAAGCTTCCACACTCGCCGTCGCCG
JMSF026O01+           AAGGCCATAAAATTCAGATAATCATATCACGCCTCTAAGCTTCCACACTCGCCGTCGCCG
rJMSF026O01-          AAGGCCATAAAATTCAGATAATCATATCACGCCTCTAAGCTTCCACACTCGCCGTCGCCG
rJMSF014F09-          AAGGCCATAAAATTCAGATAATCATATCACGCCTCTAAGCTTCCACACTCGCCGTCGCCG
                      ____________________________________________________________
consensus             AAGGCCATAAAATTCAGATAATCATATCACGCCTCTAAGCTTCCACACTCGCCGTCGCCG
 
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JMFN003E24+           CCACGAAACACTGCCAGAGCCGCCACAAAATCTGCCAATTCATTCCAATTTCCGATCGAT
JMFF034F17+           CCACGAAACACTGCCAGAGCCGCCACAAAATCTGCCAATTCATTCCAATTTCCGATCGAT
JMFS076G11+           CCACGAAACACTGCCAGAGCCGCCACAAAATCTGCCAATTCATTCCAATTTCCGATCGAT
rJMFF034F17-          CCACGAAACACTGCCAGAGCCGCCACAAAATCTGCCAATTCATTCCAATTTCCGATCGAT
JMSF026O01+           CCACGAAACACTGCCAGAGCCGCCACAAAATCTGCCAATTCATTCCAATTTCCGATCGAT
rJMSF026O01-          CCACGAAACACTGCCAGAGCCGCCACAAAATCTGCCAATTCATTCCAATTTCCGATCGAT
rJMSF014F09-          CCACGAAACACTGCCAGAGCCGCCACAAAATCTGCCAATTCATTCCAATTTCCGATCGAT
                      ____________________________________________________________
consensus             CCACGAAACACTGCCAGAGCCGCCACAAAATCTGCCAATTCATTCCAATTTCCGATCGAT
 
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JMFN003E24+           CTCCGTAGATTTCTAGTGCCGGAGAAGCCCCACGAGCGACAGCAACAGAGAAGAGCAGAG
JMFF034F17+           CTCCGTAGATTTCTAGTGCCGGAGAAGCCCCACGAGCGACAGCAACAGAGAAGAGCAGAG
JMFS076G11+           CTCCGTAGATTTCTAGTGCCGGAGAAGCCCCACGAGCGACAGCAACAGAGAAGAGCAGAG
rJMFF034F17-          CTCCGTAGATTTCTAGTGCCGGAGAAGCCCCACGAGCGACAGCAACAGAGAAGAGCAGAG
JMSF026O01+           CTCCGTAGATTTCTAGTGCCGGAGAAGCCCCACGAGCGACAGCAACAGAGAAGAGCAGAG
rJMSF026O01-          CTCCGTAGATTTCTAGTGCCGGAGAAGCCCCACGAGCGACAGCAACAGAGAAGAGCAGAG
JMSF014F09+                                                         AGAGAAGAGCAGAG
rJMSF014F09-          CTCCGTAGATTTCTAGTGCCGGAGAAGCCCCACGAGCGACAGCAACAGAGAAGAGCAGAG
                      ____________________________________________________________
consensus             CTCCGTAGATTTCTAGTGCCGGAGAAGCCCCACGAGCGACAGCAACAGAGAAGAGCAGAG
 
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JMFN003E24+           CAAGGCACCGTAACCAGTCGCCGGAAAACCAGCTCCGGAGTCCATTCCCGGCGCCGGCGC
JMFF034F17+           CAAGGCACCGTAACCAGTCGCCGGAAAACCAGCTCCGGAGTCCATTCCCGGCGCCGGCGC
JMFS076G11+           CAAGGCACCGTAACCAGTCGCCGGAAAACCAGCTCCGGAGTCCATTCCCGGCGCCGGCGC
rJMFF034F17-          CAAGGCACCGTAACCAGTCGCCGGAAAACCAGCTCCGGAGTCCATTCCCGGCGCCGGCGC
JMSF026O01+           CAAGGCACCGTAACCAGTCGCCGGAAAACCAGCTCCGGAGTCCATTCCCGGCGCCGGCGC
rJMSF026O01-          CAAGGCACCGTAACCAGTCGCCGGAAAACCAGCTCCGGAGTCCATTCCCGGCGCCGGCGC
JMSF014F09+           CAAGGCACCGTAACCAGTCGCCGGAAAACCAGCTCCGGAGTCCATTCCCGGCGCCGGCGC
rJMSF014F09-          CAAGGCACCGTAACCAGTCGCCGGAAAACCAGCTCCGGAGTCCATTCCCGGCGCCGGCGC
                      ____________________________________________________________
consensus             CAAGGCACCGTAACCAGTCGCCGGAAAACCAGCTCCGGAGTCCATTCCCGGCGCCGGCGC
 
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JMFN003E24+           CGGAGCCAGATCGATCTCCTGCGCTGCACCGTTAAAGGAGAGACACCACAGCATGAAGAT
JMFF034F17+           CGGAGCCAGATCGATCTCCTGCGCTGCACCGTTAAAGGAGAGACACCACAGCATGAAGAT
JMFS076G11+           CGGAGCCAGATCGATCTCCTGCGCTGCACCGTTAAAGGAGAGACACCACAGCATGAAGAT
rJMFF034F17-          CGGAGCCAGATCGATCTCCTGCGCTGCACCGTTAAAGGAGAGACACCACAGCATGAAGAT
JMSF026O01+           CGGAGCCAGATCGATCTCCTGCGCTGCACCGTTAAAGGAGAGACACCACAGCATGAAGAT
rJMSF026O01-          CGGAGCCAGATCGATCTCCTGCGCTGCACCGTTAAAGGAGAGACACCACAGCATGAAGAT
JMSF014F09+           CGGAGCCAGATCGATCTCCTGCGCTGCACCGTTAAAGGAGAGACACCACAGCATGAAGAT
rJMSF014F09-          CGGAGCCAGATCGATCTCCTGCGCTGCACCGTTAAAGGAGAGACACCACAGCATGAAGAT
                      ____________________________________________________________
consensus             CGGAGCCAGATCGATCTCCTGCGCTGCACCGTTAAAGGAGAGACACCACAGCATGAAGAT
 
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JMFN003E24+           AACGGAAAAGACGACGATTTCCGAGATTCCCAATTTCGCCATTTTCGCAGGTGTACGAGG
JMFF034F17+           AACGGAAAAGACGACGATTTCCGAGATTCCCAATTTCGCCATTTTCGCAGGTGTACGAGG
JMFS076G11+           AACGGAAAAGACGACGATTTCCGAGATTCCCAATTTCGCCATTTTCGCAGGTGTACGAGG
rJMFF034F17-          AACGGAAAAGACGACGATTTCCGAGATTCCCAATTTCGCCATTTTCGCAGGTGTACGAGG
JMSF026O01+           AACGGAAAAGACGACGATTTCCGAGATTCCCAATTTCGCCATTTTCGCAGGTGTACGAGG
rJMSF026O01-          AACGGAAAAGACGACGATTTCCGAGATTCCCAATTTCGCCATTTTCGCAGGTGTACGAGG
JMSF014F09+           AACGGAAAAGACGACGATTTCCGAGATTCCCAATTTCGCCATTTTCGCAGGTGTACGAGG
rJMSF014F09-          AACGGAAAAGACGACGATTTCCGAGATTCCCAATTTCGCCATTTTCGCAGGTGTACGAGG
                      ____________________________________________________________
consensus             AACGGAAAAGACGACGATTTCCGAGATTCCCAATTTCGCCATTTTCGCAGGTGTACGAGG
 
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JMFN003E24+           AAAAGCAGAGTTTTTTTCTTAAGATTGCGG                              
JMFF034F17+           AAAAGCAGAGTTTTTTTCTTAAGATTGCGGAAAGGCGGAAAGAGAAGAAGAGACGATGC 
JMFS076G11+           AAAAGCAGAGTTTTTTTCTTAAGATTGCGGAAAGGCGG                      
rJMFF034F17-          AAAAGCAGAGTTTTTTTCTTAAGATTGCGGAAAGGCGGAAAGAGAAGAAGAGACGATGC 
JMSF026O01+           AAAAGCAGAGTTTTTTTCTTAAGATTGCGGAAAGGCGGAAAGAGAAGAAGAGACGATGCC
rJMSF026O01-          AAAAGCAGAGTTTTTTTCTTAAGATTGCGGAAAGGCGGAAAGAGAAGAAGAGACGATGCC
JMSF014F09+           AAAAGCAGAGTTTTTTTCTTAAGATTGCGGAAAGGCGGAAAGAGAAGAAGAGACGATGCC
rJMSF014F09-          AAAAGCAGAGTTTTTTTCTTAAGATTGCGGAAAGGCGGAAAGAGAAGAAGAGACGATGCC
                      ____________________________________________________________
consensus             AAAAGCAGAGTTTTTTTCTTAAGATTGCGGAAAGGCGGAAAGAGAAGAAGAGACGATGCC