Contig 001317:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013J16Sequence497003607 (3)772001317 (2)ref|XP_009631768.1|1e-108PREDICTED: E3 ubiquitin-protein ligase RNF5-like [Nicotiana tomentosiformis]
JMSF014E08Sequence311003607 (3)725001317 (2)

Alignment

This contig is upended


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rJMSF013J16+          GGTGATTTGAATGCAATATCTGCTTNGACGTAGCTCATGATCCAATAGTGACGCTTTGTG
                      ____________________________________________________________
consensus             GGTGATTTGAATGCAATATCTGCTTNGACGTAGCTCATGATCCAATAGTGACGCTTTGTG
 
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rJMSF013J16+          GCCACCTTTACTGTNGGCCTTGTCTTTACCAATGGCTGCAAGTTCATTCACATTCCCATG
                      ____________________________________________________________
consensus             GCCACCTTTACTGTNGGCCTTGTCTTTACCAATGGCTGCAAGTTCATTCACATTCCCATG
 
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rJMSF013J16+          AATGCCCCGTTTGCAAGGCAGTCATAAAAGAGGAAAGACTAGTTCCCATATATGGAAGAG
                      ____________________________________________________________
consensus             AATGCCCCGTTTGCAAGGCAGTCATAAAAGAGGAAAGACTAGTTCCCATATATGGAAGAG
 
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rJMSF013J16+          GCAAAGCATGTTCTGACCCGAGGACGCGATTGATTCCTGGAATCAGTATACCAAACCGTC
                      ____________________________________________________________
consensus             GCAAAGCATGTTCTGACCCGAGGACGCGATTGATTCCTGGAATCAGTATACCAAACCGTC
 
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rJMSF013J16+          CTGTGGGACAGAGACCTCAAACTGCTCCACCTGTGGACACAAACTATTTCCGACAGGAAG
                      ____________________________________________________________
consensus             CTGTGGGACAGAGACCTCAAACTGCTCCACCTGTGGACACAAACTATTTCCGACAGGAAG
 
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rJMSF013J16+          AGTTGGACCCTATTGGGAATTTCATGCAGGTGCCAAGTGCGAGGTTTGGGAACTTAACAT
                      ____________________________________________________________
consensus             AGTTGGACCCTATTGGGAATTTCATGCAGGTGCCAAGTGCGAGGTTTGGGAACTTAACAT
 
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rJMSF013J16+          TATCTGCTCTTTTTGGAGCTATTCCTGCCCTTTTTAACCTTCATGTGAATGGATTTCATG
                      ____________________________________________________________
consensus             TATCTGCTCTTTTTGGAGCTATTCCTGCCCTTTTTAACCTTCATGTGAATGGATTTCATG
 
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rJMSF013J16+          ATGCTACCGTCTATGGGGCAACAACTGGAGTTCCCTACCTGTTTTCAAGTTCATTTCACG
                      ____________________________________________________________
consensus             ATGCTACCGTCTATGGGGCAACAACTGGAGTTCCCTACCTGTTTTCAAGTTCATTTCACG
 
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rJMSF013J16+          GAGGTTATGCTCATGGATTTTATCATGCAGCCCCAGTAGATGGGACAAAGTTTTACTTGA
                      ____________________________________________________________
consensus             GAGGTTATGCTCATGGATTTTATCATGCAGCCCCAGTAGATGGGACAAAGTTTTACTTGA
 
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rJMSF013J16+          AAATATTCTTCTTAATTGCTGGCTTCCTTTTAATTGTTTCTTTAATTTTATAGGCGCCAC
                      ____________________________________________________________
consensus             AAATATTCTTCTTAATTGCTGGCTTCCTTTTAATTGTTTCTTTAATTTTATAGGCGCCAC
 
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rJMSF013J16+          ATACCACCTTAAGTTTAGCCTGTAGAATCGATAATTATGCAATTGTATATGCTAGTAGTA
                      ____________________________________________________________
consensus             ATACCACCTTAAGTTTAGCCTGTAGAATCGATAATTATGCAATTGTATATGCTAGTAGTA
 
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rJMSF013J16+          TATCAGACCTCATAAACTTGTAAGGTCTATCATAGTAGCCTCTCTGCCCCATTCCTTTTC
rJMSF014E08+                                                                 TTTTC
                      ____________________________________________________________
consensus             TATCAGACCTCATAAACTTGTAAGGTCTATCATAGTAGCCTCTCTGCCCCATTCCTTTTC
 
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rJMSF013J16+          TCAATAACTAGTTGGCAGATCTTCCACGTTTCTTGAAGTTGTTGTATAGCTA        
rJMSF014E08+          TCAATAACTAGTTGGCAGATCTTCCACGTTTCTTGAAGTTGTTGTATAGCTATGTAATCG
                      ____________________________________________________________
consensus             TCAATAACTAGTTGGCAGATCTTCCACGTTTCTTGAAGTTGTTGTATAGCTATGTAATCG
 
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rJMSF014E08+          AAGGATGATATATCAGTCTAAGTTGTTTGTGTTCTACTGCTGTATCGGGTCTCTCCGTCT
                      ____________________________________________________________
consensus             AAGGATGATATATCAGTCTAAGTTGTTTGTGTTCTACTGCTGTATCGGGTCTCTCCGTCT
 
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rJMSF014E08+          CTATGAAATCCTATATGTGAGTGCAAATTTATCACTATAGTTGTTTGAATCTGTTGTTTT
                      ____________________________________________________________
consensus             CTATGAAATCCTATATGTGAGTGCAAATTTATCACTATAGTTGTTTGAATCTGTTGTTTT
 
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rJMSF014E08+          GGCATTATCATTTGATAGTTTATACACAAAATGGGTACACAAAAATGCAGCCAATGATGG
                      ____________________________________________________________
consensus             GGCATTATCATTTGATAGTTTATACACAAAATGGGTACACAAAAATGCAGCCAATGATGG
 
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rJMSF014E08+          AGATGCAAGTGGAATGAAGCCCCTATATGTGTGCATTGTTAATGGGCGAAAATTCTTGGA
                      ____________________________________________________________
consensus             AGATGCAAGTGGAATGAAGCCCCTATATGTGTGCATTGTTAATGGGCGAAAATTCTTGGA
 
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rJMSF014E08+          CAGACTAAATTTATAACTCGGGAACTCTATGGATGAACTTCTATTACAAGGTAATATTTG
                      ____________________________________________________________
consensus             CAGACTAAATTTATAACTCGGGAACTCTATGGATGAACTTCTATTACAAGGTAATATTTG
 
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rJMSF014E08+          TTCTATACTTTTTCTATCTGTTGCAGCCTAAAGAGTCAATACTCCACCACTAGAGTTCGA
                      ____________________________________________________________
consensus             TTCTATACTTTTTCTATCTGTTGCAGCCTAAAGAGTCAATACTCCACCACTAGAGTTCGA
 
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rJMSF014E08+          TTATGTGACCTTCCCTCAAGAAGAGCTACAAAGGTGTCATCTGAGCACAAGATACTTGGC
                      ____________________________________________________________
consensus             TTATGTGACCTTCCCTCAAGAAGAGCTACAAAGGTGTCATCTGAGCACAAGATACTTGGC
 
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rJMSF014E08+          ACTATGGATGAACTTTATTTAGTGTTTCTCCAATGTCAATATATGTATGTATTTCTAGGG
                      ____________________________________________________________
consensus             ACTATGGATGAACTTTATTTAGTGTTTCTCCAATGTCAATATATGTATGTATTTCTAGGG
 
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rJMSF014E08+          TTTGGTGTGCACTTGTGAGTCAAAGGGATTATTTGCAGTCAACATGTCTGGGTTAGTTTG
                      ____________________________________________________________
consensus             TTTGGTGTGCACTTGTGAGTCAAAGGGATTATTTGCAGTCAACATGTCTGGGTTAGTTTG
 
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rJMSF014E08+          GTGTGTGCAACATCTAGTTGGTGAAAATTTCAATGCTCCACCAAACCTTTGGTACTATTT
                      ____________________________________________________________
consensus             GTGTGTGCAACATCTAGTTGGTGAAAATTTCAATGCTCCACCAAACCTTTGGTACTATTT
 
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rJMSF014E08+          TCTACAACCACAAAATCAGAACACATGTTCTGTATCTGATCATGTTTACTGATTTCTTAG
                      ____________________________________________________________
consensus             TCTACAACCACAAAATCAGAACACATGTTCTGTATCTGATCATGTTTACTGATTTCTTAG