Contig 001316:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014C14Sequence354006613 (4)790001316 (4)ref|XP_006358871.1|9e-136PREDICTED: scarecrow-like protein 28-like [Solanum tuberosum]
JMSF036B18Sequence402006613 (4)709001316 (4)ref|XP_004245645.1|1e-109PREDICTED: scarecrow-like protein 28 [Solanum lycopersicum]
JMSF040P15Sequence591006613 (4)746001316 (4)ref|XP_006358871.1|4e-133PREDICTED: scarecrow-like protein 28-like [Solanum tuberosum]
JMSF041I09Sequence684001316 (4)ref|XP_004245645.1|6e-108PREDICTED: scarecrow-like protein 28 [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF014C14+                                                          GCNTCCAATGGC
                      ____________________________________________________________
consensus                                                             GCNTCCAATGGC
 
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rJMSF040P15+                                          TAATCCCCCGGAGTCACATTAGGATCAC
rJMSF014C14+          CTAGCCTGTTCCAGAGTTTGGCTTNCCCGGGCTAATCCCCCCGAGTCACATTAGGATCAC
                      ____________________________________________________________
consensus             CTAGCCTGTTCCAGAGTTTGGCTTNCCCGGGCTAATCCCCCGGAGTCACATTAGGATCAC
 
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rJMSF040P15+          GGGCATNGGAGAATNGAAGCAAGAACTGCTCGAAACTGGCGATCGACTGGCTGGA-TTCG
rJMSF036B18+                         GAAGCAAGAACTGCTCGAAACTGGCGATCGACTGGCTGGATTTCG
rJMSF014C14+          GGGCATCGGAGAATCGAAGCAAGAACTGCTCGAAACTGGCGATCGACTGGCTGGA-TTCG
                      ____________________________________________________________
consensus             GGGCATCGGAGAATCGAAGCAAGAACTGCTCGAAACTGGCGATCGACTGGCTGGA-TTCG
 
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rJMSF040P15+          CCGAGCAACTCAACCTGGCCTTTGAGTTCCA-CCCAGTGGTTGATAGGCTAGAAGATGTG
rJMSF041I09+                                          CCCAGTGGTTGATAGGCTNGAAGATGTG
rJMSF036B18+          CCGAGCAACTCAACCTGGCCTTTGAGTTCCACCCCAGTGGTTGATAGGCTAGAAGATGTG
rJMSF014C14+          CCGAGCAACTCAACCTGGCCTTTGAGTTCCA-CCCAGTGGTTGATAGGCTAGAAGATGTG
                      ____________________________________________________________
consensus             CCGAGCAACTCAACCTGGCCTTTGAGTTCCA-CCCAGTGGTTGATAGGCTAGAAGATGTG
 
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rJMSF040P15+          AGACTGTGGATGCTCCATGTGAAGGAGGGCGAAAGCGTTGCAGTGAATTGTATGCTCCAG
rJMSF041I09+          AGACTGNGGATGCTCCATGTGAAGGAGGGCGAAAGCGTTGCAGTGAATTGTATGCTCCAG
rJMSF036B18+          AGACTGTGGATGCTCCATGTGAAGGAGGGCGAAAGCGTTGCAGTGAATTGTATGCTCCAG
rJMSF014C14+          AGACTGTGGATGCTCCATGTGAAGGAGGGCGAAAGCGTTGCAGTGAATTGTATGCTCCAG
                      ____________________________________________________________
consensus             AGACTGTGGATGCTCCATGTGAAGGAGGGCGAAAGCGTTGCAGTGAATTGTATGCTCCAG
 
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rJMSF040P15+          ATGCACAAGGTCTTGTACGACACTTCCGGTCGAGCCCTTGTGGATTTCTTGGGCTTGATC
rJMSF041I09+          ATGCACAAGGTCTTGTACGACACTTCCGGTCGAGCCCTTGTGGATTTCTTGGGCTTGATC
rJMSF036B18+          ATGCACAAGGTCTTGTACGACACTTCCGGTCGAGCCCTTGTGGATTTCTTGGGCTTGATC
rJMSF014C14+          ATGCACAAGGTCTTGTACGACACTTCCGGTCGAGCCCTTGTGGATTTCTTGGGCTTGATC
                      ____________________________________________________________
consensus             ATGCACAAGGTCTTGTACGACACTTCCGGTCGAGCCCTTGTGGATTTCTTGGGCTTGATC
 
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rJMSF040P15+          CGAAGCACAAACCCGATAGCTGTCGTGATGGCAGAACAAGAAGCCGAGCACGACGAGTCC
rJMSF041I09+          CGAAGCACAAACCCGATAGCTGTCGTGATGGCAGAACAAGAAGCCGAGCACGACGAGTCC
rJMSF036B18+          CGAAGCACAAACCCGATAGCTGTCGTGATGGCAGAACAAGAAGCCGAGCACGACGAGTCC
rJMSF014C14+          CGAAGCACAAACCCGATAGCTGTCGTGATGGCAGAACAAGAAGCCGAGCACGACGAGTCC
                      ____________________________________________________________
consensus             CGAAGCACAAACCCGATAGCTGTCGTGATGGCAGAACAAGAAGCCGAGCACGACGAGTCC
 
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rJMSF040P15+          AGCTTGGAATCGAGGCTTGTAAACTCCTTAAAGTACTACTCCGCTGTCTTCGATTCCCTC
rJMSF041I09+          AGCTTGGAATCGAGGCTTGTAAACTCCTTAAAGTNCTACTCCGCTGTNTTCGATTCCCTC
rJMSF036B18+          AGCTTGGAATCGAGGCTTGTAAACTCCTTAAAGTACTACTCCGCTGTCTTCGATTCCCTC
rJMSF014C14+          AGCTTGGAATCGAGGCTTGTAAACTCCTTAAAGTACTACTCCGCTGTCTTCGATTCCCTC
                      ____________________________________________________________
consensus             AGCTTGGAATCGAGGCTTGTAAACTCCTTAAAGTACTACTCCGCTGTCTTCGATTCCCTC
 
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rJMSF040P15+          GACTCAACCCTGCCACTAGACAGCCCGGTCAGGACCAAGATCGAGGAGATGTTCGCCCGG
rJMSF041I09+          GACTCAACCCTGCCACTAGACAGCCCGGTCAGGACCAAGATCGAGGAGATGTTCNCCCGG
rJMSF036B18+          GACTCAACCCTGCCACTAGACAGCCCGGTCAGGACCAAGATCGAGGAGATGTTCGCCCGG
rJMSF014C14+          GACTCAACCCTGCCACTAGACAGCCCGGTCAGGACCAAGATCGAGGAGATGTTCGCCCGG
                      ____________________________________________________________
consensus             GACTCAACCCTGCCACTAGACAGCCCGGTCAGGACCAAGATCGAGGAGATGTTCGCCCGG
 
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rJMSF040P15+          GAGATCAGGAACATCATTGCCTGCGAGGGACGAGAGAGGCTCGAGAGGCACGCGAGTTTT
rJMSF041I09+          GAGATCAGGAACATCATTGCCTGCGAGGGACGAGAGAGGCTCGAGAGGCACGCGAGTTTT
rJMSF036B18+          GAGATCAGGAACATCATTGCCTGCGAGGGACGAGAGAGGCTCGAGAGGCACGCGAGTTTT
rJMSF014C14+          GAGATCAGGAACATCATTGCCTGCGAGGGACGAGAGAGGCTCGAGAGGCACGCGAGTTTT
                      ____________________________________________________________
consensus             GAGATCAGGAACATCATTGCCTGCGAGGGACGAGAGAGGCTCGAGAGGCACGCGAGTTTT
 
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rJMSF040P15+          GGCAAGTGGAGGAAGCTGCTGATGGAGCAAGGGAAGTTTCGGTGCGTGGGGATCACGGAG
rJMSF041I09+          GGCAAGTGGAGGAAGCTGCTGATGGAGCAAGGGAAGTTTCGGTGCGTGGGGATCACGGAG
rJMSF036B18+          GGCAAGTGGAGGAAGCTGCTGATGGAGCAAGGGAAGTTTCGGTGCGTGGGGATCACGGAG
rJMSF014C14+          GGCAAGTGGAGGAAGCTGCTGATGGAGCAAGGGAAGTTTCGGTGCGTGGGGATCACGGAG
                      ____________________________________________________________
consensus             GGCAAGTGGAGGAAGCTGCTGATGGAGCAAGGGAAGTTTCGGTGCGTGGGGATCACGGAG
 
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rJMSF040P15+          AGGGAGCTTCTGCAAAGCCAAATGCTGCTTAAGATGCACTCTATGGAGAGCTACAAGGTG
rJMSF041I09+          AGGGAGCTTCTGCAAAGCCAAATGCTGCTTAAGATGCACTCTATGGAGAGNTACAAGGTG
rJMSF036B18+          AGGGAGCTTCTGCAAAGCCAAATGCTGCTTAAGATGCACTCTATGGAGAGCTACAAGGTG
rJMSF014C14+          AGGGAGCTTCTGCAAAGCCAAATGCTGCTTAAGATGCACTCTATGGAGAGCTACAAGGTG
                      ____________________________________________________________
consensus             AGGGAGCTTCTGCAAAGCCAAATGCTGCTTAAGATGCACTCTATGGAGAGCTACAAGGTG
 
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rJMSF040P15+          GAGAAGCAAGGGGAGGATGATGGACTGACTCTTAGTTGGGAAGACCAGCCACTTTATACA
rJMSF041I09+          GAGAAGCAAGGGGAGGATGATGGACNGACTNTTAGTTGGGAAGACCAGCCACTTTATACA
rJMSF036B18+          GAGAAGCAAGGGGAGGATGATGGACTGACTCTTAGTTGGGAAGACCAGCCACTTTATACA
rJMSF014C14+          GAGAAGCAAGGGGAGGATGATGGACTGACTCTTAGTTGGGAAGACCAGCCACTTTATACA
                      ____________________________________________________________
consensus             GAGAAGCAAGGGGAGGATGATGGACTGACTCTTAGTTGGGAAGACCAGCCACTTTATACA
 
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rJMSF040P15+          GTCTCAGCATGGACACCTTTTGATATTGCAGGAAGTTCATCTTCTTATTCTCAGCCAACT
rJMSF041I09+          GTCTCAGCATGGACACCTTTTGATNNTGCAGGAAGTTCATCTTCTTATTCTCAGCCAACT
rJMSF036B18+          GTCTCAGCATGGACACCTTTTGATATTGCAGGAAGTTCATCTTCTTATTCTCAGCCAACT
rJMSF014C14+          GTCTCAGCATGGACACCTTTTGATATTGCAGGAAGTTCATCTTCTTATTCTCAGCCAACT
                      ____________________________________________________________
consensus             GTCTCAGCATGGACACCTTTTGATATTGCAGGAAGTTCATCTTCTTATTCTCAGCCAACT