Contig 001312:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004F17Sequence460023110ref|XP_009800799.1|2e-08PREDICTED: BTB/POZ domain-containing protein At1g63850 [Nicotiana sylvestris]363001312 (2)ref|XP_009774612.1|2e-18PREDICTED: transmembrane protein 33 homolog [Nicotiana sylvestris]
JMSF013M13Sequence270009258 (2)ref|XP_011085554.1|5e-22PREDICTED: transmembrane protein 33 homolog [Sesamum indicum]656001312 (2)ref|XP_009774612.1|7e-60PREDICTED: transmembrane protein 33 homolog [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF013M13+              CTTTGATTCCAATTTTATGCCAAGAACTTGAGCATATCGCAAAGTTCCTTAGGCGT
                      ____________________________________________________________
consensus                 CTTTGATTCCAATTTTATGCCAAGAACTTGAGCATATCGCAAAGTTCCTTAGGCGT
 
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rJMSF013M13+          AACTTTAGCAGAACCTCTTTATACAGGAGGTACTTTGATGATGCATGTGTATGGGTTGAG
                      ____________________________________________________________
consensus             AACTTTAGCAGAACCTCTTTATACAGGAGGTACTTTGATGATGCATGTGTATGGGTTGAG
 
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rJMSF013M13+          TCAAATGCAAGTACGCTTAAGATACTGACTTCACAAGCTGAGATTGGAATTGGGTTCCTT
                      ____________________________________________________________
consensus             TCAAATGCAAGTACGCTTAAGATACTGACTTCACAAGCTGAGATTGGAATTGGGTTCCTT
 
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rJMSF013M13+          TTGATTATCTCTCTTTTCTCGTGGCAGCGCAACATAATACAGACATTCATGTACTGGCAG
                      ____________________________________________________________
consensus             TTGATTATCTCTCTTTTCTCGTGGCAGCGCAACATAATACAGACATTCATGTACTGGCAG
 
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rJMSF004F17+               AAAGCTCATGTACCATGCACCAGCAACTGCTGGTTACCATCAGAGTGCATGGACA
rJMSF013M13+          CTACTAAAGCTCATGTACCATGCACCAGCAACTGCTGGTTACCATCAGAGTGCATGGACA
                      ____________________________________________________________
consensus             CTACTAAAGCTCATGTACCATGCACCAGCAACTGCTGGTTACCATCAGAGTGCATGGACA
 
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rJMSF004F17+          AAGATTGGGAGGCTCATCAATCCTNTNGTCCAAAAATACGCCCCGTTCTTGAACACACNT
rJMSF013M13+          AAGATTGGGAGGCTCATCAATCCTCTCGTCCAAAAATACGCCCCGTTCTTGAACACACCT
                      ____________________________________________________________
consensus             AAGATTGGGAGGCTCATCAATCCTCTCGTCCAAAAATACGCCCCGTTCTTGAACACACCT
 
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rJMSF004F17+          ATTTCTGCTGCACAGAAGTGGTGGTTAAGGTGAAAGAAAGCATCTCCANCAAACATTAAC
rJMSF013M13+          ATTTCTGCTGCACAGAAGTGGTGGTTAAGGTGAAAGAAAGCATCTCCAACAAACATTAAC
                      ____________________________________________________________
consensus             ATTTCTGCTGCACAGAAGTGGTGGTTAAGGTGAAAGAAAGCATCTCCAACAAACATTAAC
 
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rJMSF004F17+          TGCAGTGTGTTGATATATGCTCCAGGCATCAGATAATTTGAGGTGGGTTAGCATCTTAGC
rJMSF013M13+          TGCAGTGTGTTGATATATGCTCCAGGCATCAGATAATTTGAGGTGGGTTAGCATCTTAGC
                      ____________________________________________________________
consensus             TGCAGTGTGTTGATATATGCTCCAGGCATCAGATAATTTGAGGTGGGTTAGCATCTTAGC
 
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rJMSF004F17+          ACCAGTGAATTGGTGAGAAGGATATATGCTCTCTTCTTTAATGAACTTTTCTATGGTGCA
rJMSF013M13+          ACCAGTGAATTGGTGAGAAGGATATATGCTCTCTTCTTTAATGAACTTTTCTATGGTGCA
                      ____________________________________________________________
consensus             ACCAGTGAATTGGTGAGAAGGATATATGCTCTCTTCTTTAATGAACTTTTCTATGGTGCA
 
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rJMSF004F17+          CAGAGTGTACTGCATACACTTTTTGTTATGGGTATAACTTTCTGGATAGATAACTTAAGA
rJMSF013M13+          CAGAGTGTACTGCATACACTTTTTGTTATGGGTATAACTTTCTGGATAGATAATTTAAGA
                      ____________________________________________________________
consensus             CAGAGTGTACTGCATACACTTTTTGTTATGGGTATAACTTTCTGGATAGATAATTTAAGA
 
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rJMSF004F17+          TTGAAATC                                                    
rJMSF013M13+          TTGAAATCCTAAGTAACAAAATATCATACTCCCTAATAAAATTTTGTCTTTGGCAGATGT
                      ____________________________________________________________
consensus             TTGAAATCCTAAGTAACAAAATATCATACTCCCTAATAAAATTTTGTCTTTGGCAGATGT