| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF003K18 | Sequence | 112 | 022011 | 584 | 001311 (3) | ref|XP_011088476.1| | 3e-51 | PREDICTED: MATE efflux family protein 4, chloroplastic [Sesamum indicum] | |||
| JMSF013M03 | Sequence | 483 | 013295 (2) | 761 | 001311 (3) | ref|XP_011088476.1| | 6e-88 | PREDICTED: MATE efflux family protein 4, chloroplastic [Sesamum indicum] | |||
| JMSF049K10 | Sequence | 692 | 013295 (2) | ref|XP_009592832.1| | 2e-57 | PREDICTED: MATE efflux family protein 4, chloroplastic-like [Nicotiana tomentos | 800 | 001311 (3) | ref|XP_011088476.1| | 2e-105 | PREDICTED: MATE efflux family protein 4, chloroplastic [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF049K10+ AGGAACNTTTG
____________________________________________________________
consensus AGGAACNTTTG
. : . : . : . : . : . :
rJMSF049K10+ CAGATATTCGTGCTTGCAGGCCCAGTGTTTGTANCAATGATGTCAAAGGTGGCATTTTAC
____________________________________________________________
consensus CAGATATTCGTGCTTGCAGGCCCAGTGTTTGTANCAATGATGTCAAAGGTGGCATTTTAC
. : . : . : . : . : . :
rJMSF003K18+ CATTACATCAATGGGCACACACGTACGTGCTGNCCATCAGGTT
rJMSF049K10+ TCTTTACTTGTCTATTGCATTACATCAATGGGCACACACGTACTTGCTGGCCATCAGGTT
rJMSF013M03+ CATTACATCAANGGGCACACACGTACCTGCTGGCCATCAGGTT
____________________________________________________________
consensus TCTTTACTTGTCTATTGCATTACATCAATGGGCACACACGTACTTGCTGGCCATCAGGTT
. : . : . : . : . : . :
rJMSF003K18+ NTGANACAATTNTACTGCNTNTGTGCCGTATGGAGTGAGCCTCTCTCTCAGACGGCACAG
rJMSF049K10+ ATGATACAATTATACTGCTTATGTGCTGTATGGAGTGAGCCTCTCTCTCAGACGGCACAG
rJMSF013M03+ ATGATACAATTATACTGCTTATGTGCTGTATGGAGTGAGCCTCTCTCTCAGACGGCACAG
____________________________________________________________
consensus ATGATACAATTATACTGCTTATGTGCTGTATGGAGTGAGCCTCTCTCTCAGACGGCACAG
. : . : . : . : . : . :
rJMSF003K18+ TCATTTATGCCTGAGCATGATATATGGAGTTAATCGAAATTTATCCAAGGCTCAGATGTT
rJMSF049K10+ TCATTTATGCCTGAGC-TGATATATGGAGTTAATCGAAATTTATCCAAGGCTCAGATGTT
rJMSF013M03+ TCATTTATGCCTGAGC-TGATATATGGAGTTAATCGAAATTTATCCAAGGCTCAGATGTT
____________________________________________________________
consensus TCATTTATGCCTGAGC-TGATATATGGAGTTAATCGAAATTTATCCAAGGCTCAGATGTT
. : . : . : . : . : . :
rJMSF003K18+ GTNGAAGTCACTGTTGATTATCGCTGCAATAAATGGGTTCTTAGTGGCATGTATNGGAAC
rJMSF049K10+ GTTGAAGTCACTGTTGATTATTGCTGCAATAAATGGGTTCTTATTGGCATGTATTGGAAC
rJMSF013M03+ GTTGAAGTCACTGTTGATTATTGCTGCAATAAATGGGTTCTTATTGGCATGTATTGGAAC
____________________________________________________________
consensus GTTGAAGTCACTGTTGATTATTGCTGCAATAAATGGGTTCTTATTGGCATGTATTGGAAC
. : . : . : . : . : . :
rJMSF003K18+ CTCATATTCCCTGGTTGTTCCCCAAAATATTCTCACCCGATCNTGCGGTTATTCGAGAGA
rJMSF049K10+ CTC-TATTCCCTGGTTGTTCCCCAAAATATTCTCACCCGATCCTGCGGTTATTCGAGAGA
rJMSF013M03+ CTC-TATTCCCTGGTTGTTCCCCAAAATATTCTCACCCGATCCTGCGGTTATTCGAGAGA
____________________________________________________________
consensus CTC-TATTCCCTGGTTGTTCCCCAAAATATTCTCACCCGATCCTGCGGTTATTCGAGAGA
. : . : . : . : . : . :
rJMSF003K18+ TGCAGAGCGTGTTGTTACCATACTTCCTTGCACTTTGTGTGTCGCCCAGTGTCCACAGCC
rJMSF049K10+ TGCAGAGTGTGTTGTTACCATACTTCCTTGCACTTTGTGTGTCGCCCAGTGTCCACAGCC
rJMSF013M03+ TGCAGAGTGTGTTGTTACCATACTTCCTTGCACTTTGTGTGTCGCCCAGTGTCCACAGCC
____________________________________________________________
consensus TGCAGAGTGTGTTGTTACCATACTTCCTTGCACTTTGTGTGTCGCCCAGTGTCCACAGCC
. : . : . : . : . : . :
rJMSF003K18+ TCGAGGGAACATTATTGGCTGGACGAGATCTGAAATTCNTTAGNGCATCAANGTCNGGNC
rJMSF049K10+ TCGAGGGAACATTATTGGCTGGACGAGATTTGAAATTCATTAGTGCATCAATGTCTGGAC
rJMSF013M03+ TCGAGGGAACATTATTGGCTGGACGAGATTTGAAATTCATTAGTGCATCAATGTCTGGAC
____________________________________________________________
consensus TCGAGGGAACATTATTGGCTGGACGAGATTTGAAATTCATTAGTGCATCAATGTCTGGAC
. : . : . : . : . : . :
rJMSF003K18+ TCTNNGGTNTGGTTTCTNTTCTCGTCTGGCTANTGAGCAGTAAAGAGTTCGGTTTGGCAG
rJMSF049K10+ TCTTTGGTTTGGTTTCTCTTCTCGTCTGGCTATTGAGCAGTAAAGGGTTCGGTTTGGCAG
rJMSF013M03+ TCTTTGGTTTGGTTTCTCTTCTCGTCTGGCTATTGAGCAGTAAAGGGTTCGGTTTGGCAG
____________________________________________________________
consensus TCTTTGGTTTGGTTTCTCTTCTCGTCTGGCTATTGAGCAGTAAAGGGTTCGGTTTGGCAG
. : . : . : . : . : . :
rJMSF003K18+ GATGTTGGTTNGCACNNGTTGCATTTCAATGGTCNCGATATGCTGNTGCTCTAAGACGCN
rJMSF049K10+ GATGTTGGTTTGCACTTGTTGCATTTCAATGGTCTCGATATGCTGTTGCTCTAAGACGCC
rJMSF013M03+ GATGTTGGTTTGCACTTGTTGCATTTCAATGGTCTCGATATGCTGTTGCTCTAAGACGCC
____________________________________________________________
consensus GATGTTGGTTTGCACTTGTTGCATTTCAATGGTCTCGATATGCTGTTGCTCTAAGACGCC
. : . : . : . : . : . :
rJMSF003K18+ TAATCTCACNTAATGGANTGCNNNATTNTGAAGATTCAACTTATTATGAGGTGGATAA
rJMSF049K10+ TAATCTCACCTAATGGAATGCTTTATTCTGAAGATTCAACTTATTATGAGGTGGATAAGT
rJMSF013M03+ TAATCTCACCTAATGGAATGCTTTATTCTGAAGATTCAACTTATTATGAGGTGGATAAGT
____________________________________________________________
consensus TAATCTCACCTAATGGAATGCTTTATTCTGAAGATTCAACTTATTATGAGGTGGATAAGT
. : . : . : . : . : . :
rJMSF049K10+ TGAAAGCCGTATAGTAACGCAAATTATTCTATGAATCCGGGTCCAAATATTCACAATTTA
rJMSF013M03+ TGAAAGCCGTATAGTAACGCAAATTATTCTATGAATCCGGGTCCAAATATTCACAATTTA
____________________________________________________________
consensus TGAAAGCCGTATAGTAACGCAAATTATTCTATGAATCCGGGTCCAAATATTCACAATTTA
. : . : . : . : . : . :
rJMSF049K10+ CCAATTAAAAATTCACAATTTGTACACTACGAATGCACAATGTTAACATATATGTAATTG
rJMSF013M03+ CCAATTAAAAATTCACAATTTGTACACTACGAATGCACAATGTTAACATATATGTAATTG
____________________________________________________________
consensus CCAATTAAAAATTCACAATTTGTACACTACGAATGCACAATGTTAACATATATGTAATTG
. : . : . : . : . : . :
rJMSF049K10+ ATTACT
rJMSF013M03+ ATTACTTGTTTTGTATTTACAAATTCTTTTTAAATATTGCAATGACACAATATAACAGAT
____________________________________________________________
consensus ATTACTTGTTTTGTATTTACAAATTCTTTTTAAATATTGCAATGACACAATATAACAGAT