Contig 001310:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN034D03Sequence491001310 (2)ref|XP_006344182.1|6e-50PREDICTED: amino-acid permease BAT1 homolog isoform X3 [Solanum tuberosum]
JMSF013L03Sequence529007301 (2)ref|XP_009594577.1|1e-82PREDICTED: amino-acid permease BAT1 homolog isoform X3 [Nicotiana tomentosiform714001310 (2)ref|XP_009786770.1|5e-72PREDICTED: amino-acid permease BAT1 homolog isoform X2 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFN034D03+                                                           GCAGGGCTACAT
rJMSF013L03-                AATCTTCTGTAACTTGAGTTATTTGTTGGTGACTTGCAGGTTGCAGGGCTACAT
                      ____________________________________________________________
consensus                   AATCTTCTGTAACTTGAGTTATTTGTTGGTGACTTGCAGGTTGCAGGGCTACAT
 
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JMFN034D03+           AGTTTATTCCATAAAACATAAGCTTAAGCAAGTACTAAACAATTTGAAATCTCTAATGTC
rJMSF013L03-          AGTTTATTCCATAAAACATAAGCTTAAGCAAGTACTAAACAATTTGAAATCTCTAATGTC
                      ____________________________________________________________
consensus             AGTTTATTCCATAAAACATAAGCTTAAGCAAGTACTAAACAATTTGAAATCTCTAATGTC
 
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JMFN034D03+           CCACATTTGTACATACAAAAATCTTACAATTATGCATCTCCACTTGAAGAGTGATCAATA
rJMSF013L03-          CCACATTTGTACATACAAAAATCTTACAATTATGCATCTCCACTTGAAGAGTGATCAATA
                      ____________________________________________________________
consensus             CCACATTTGTACATACAAAAATCTTACAATTATGCATCTCCACTTGAAGAGTGATCAATA
 
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JMFN034D03+           TTTGTAATAGGGCCTTTGAACCAATGCCTAGCACCAAAAATCCATGAAGAGACAACCAGA
rJMSF013L03-          TTTGTAATAGGGCCTTTGAACCAATGCCTAGCACCAAAAATCCATGAAGAGACAACCAGA
                      ____________________________________________________________
consensus             TTTGTAATAGGGCCTTTGAACCAATGCCTAGCACCAAAAATCCATGAAGAGACAACCAGA
 
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JMFN034D03+           ACAAGAAGGCCTCCTACTGCTACTGGAGTGTAATTCAGAGTTTTATCTGTTATAGGATAC
rJMSF013L03-          ACAAGAAGGCCTCCTACTGCTACTGGAGTGTAATTCAGAGTTTTATCTGTTATAGGATAC
                      ____________________________________________________________
consensus             ACAAGAAGGCCTCCTACTGCTACTGGAGTGTAATTCAGAGTTTTATCTGTTATAGGATAC
 
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JMFN034D03+           CTTACAGGCAACGAGAAGAGCACAGAAATGGTGGCCACCCACGAGACCGAAATCCAACCC
rJMSF013L03-          CTTACAGGCAACGAGAAGAGCACAGAAATGGTGGCCACCCACGAGACCGAAATCCAACCC
                      ____________________________________________________________
consensus             CTTACAGGCAACGAGAAGAGCACAGAAATGGTGGCCACCCACGAGACCGAAATCCAACCC
 
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JMFN034D03+           ACGACGACCCCATAGCGCCCCAAGTTGAACGGCCCTGGCACGAAAGATTTCCGGGCCAAA
rJMSF013L03-          ACGACGACCCCATAGCGCCCCAAGTTGAACGGCCCTGGCACGAAAGATTTCCGGGCCAAA
                      ____________________________________________________________
consensus             ACGACGACCCCATAGCGCCCCAAGTTGAACGGCCCTGGCACGAAAGATTTCCGGGCCAAA
 
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JMFN034D03+           GTCACTC                                                     
rJMSF013L03-          GTCACTCGTTAGTGCCATGCAGAATGCGATTAGAGCTGATGCCCAGACTGCGTTAATTGG
                      ____________________________________________________________
consensus             GTCACTCGTTAGTGCCATGCAGAATGCGATTAGAGCTGATGCCCAGACTGCGTTAATTGG
 
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rJMSF013L03-          GACCTCTTGCTTGTTCACTTTATGCCAGAACGCCGAAAATGGCATAGCTCCATCTCGCGA
                      ____________________________________________________________
consensus             GACCTCTTGCTTGTTCACTTTATGCCAGAACGCCGAAAATGGCATAGCTCCATCTCGCGA
 
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rJMSF013L03-          GAATGCATAAGCCATCCTCGAGTTGCTAGTCAGTGAGCTCATTCCACAGAAGAATATGGC
                      ____________________________________________________________
consensus             GAATGCATAAGCCATCCTCGAGTTGCTAGTCAGTGAGCTCATTCCACAGAAGAATATGGC
 
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rJMSF013L03-          GACGGCTATAACACCTAAACAAACAATTCCACCAACACCGCTGCCATATCTACTCTTAAA
                      ____________________________________________________________
consensus             GACGGCTATAACACCTAAACAAACAATTCCACCAACACCGCTGCCATATCTACTCTTAAA
 
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rJMSF013L03-          CGCATCATAGAACATTTGAGCGATAGCATAACCACCCGCATCGTTATCCGGGCTCAAAAG
                      ____________________________________________________________
consensus             CGCATCATAGAACATTTGAGCGATAGCATAACCACCCGCATCGTTATCCGGGCTCAAAAG