Contig 001309:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033P17Sequence481001309 (7)ref|XP_009601289.1|4e-53PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Nicotiana tomentosifo677001309 (7)ref|XP_009601289.1|5e-53PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Nicotiana tomentosifo
JMFN018B12Sequence625001309 (7)ref|XP_009601289.1|7e-55PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Nicotiana tomentosifo
JMSF001H08Sequence422001309 (7)ref|XP_009601289.1|8e-39PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Nicotiana tomentosifo653001309 (7)ref|XP_009601289.1|4e-53PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Nicotiana tomentosifo
JMSF012M24Sequence244001309 (7)ref|XP_009601289.1|2e-11PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Nicotiana tomentosifo674001309 (7)ref|XP_009601289.1|8e-53PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Nicotiana tomentosifo

Alignment

This contig is upended


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rJMFF033P17-                                                       TGATGAATCTGCGCT
                      ____________________________________________________________
consensus                                                          TGATGAATCTGCGCT
 
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rJMFF033P17-          AACTTTTCAATGTTTGTTGTACCAATAAACTTGCATTAGTCCTTTGGTGCATAGCACCCT
rJMSF012M24-                                                        GTGCATAGCACCCT
                      ____________________________________________________________
consensus             AACTTTTCAATGTTTGTTGTACCAATAAACTTGCATTAGTCCTTTGGTGCATAGCACCCT
 
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rJMFF033P17-          AAAAAATATTATATTTCCA-GTTTCCCTTCCCCACAATGCATTTGAATCAAATAACCCAA
rJMSF012M24-          AAAAAATATTATATTTCCAGGTTTCCCTTCCCCACAATGCATTTGAATCAAATAACCCAA
                      ____________________________________________________________
consensus             AAAAAATATTATATTTCCAGGTTTCCCTTCCCCACAATGCATTTGAATCAAATAACCCAA
 
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rJMFF033P17-          TTTTTTTTAGCATAAATTGTTCAAGAGAGACACCATGAAATAAACTGGGAATTATTCATC
rJMSF012M24-          TTTTTTTTAGCATAAATTGTTCAAGAGAGACACCATGAAATAAACTGGGAATTATTCATC
                      ____________________________________________________________
consensus             TTTTTTTTAGCATAAATTGTTCAAGAGAGACACCATGAAATAAACTGGGAATTATTCATC
 
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rJMFF033P17-          AGTCAGCAGCAAATAGTAGTATCAGAATCCAAATTCAAACCAATTCAATTCCTTCTCCCC
JMFN018B12+                                      TCCAAATTCAAACCAATTCAATTCCTTCTCCCC
rJMSF001H08-                              ATCAGAATCCAAATTCAAACCAATTCAATTCCTTCTCCCC
JMFF033P17+                                                                      C
rJMSF012M24-          AGTCAGCAGCAAATAGTAGTATCAGAATCCAAATTCAAACCAATTCAATTCCTTCTCCCC
                      ____________________________________________________________
consensus             AGTCAGCAGCAAATAGTAGTATCAGAATCCAAATTCAAACCAATTCAATTCCTTCTCCCC
 
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rJMFF033P17-          TGATGGAATCAATCACAGCTTTGACCTTTCCATGATATCTCTGATCCTTTTTGAAGAAAA
JMFN018B12+           TGATGGAATCAATCACAGCTTTGACCTTTCCATGGTATCTCTGATCCTTTTTGAAGAAAA
rJMSF001H08-          TGATGGAATCAATCACAGCTTTGACCTTTCCATGATATCTCTGATCCTTTTTGAAGAAAA
JMFF033P17+           TGATGGAATCAATCACAGCTTTGACCTTTCCATGATATCTCTGATCCTTTTTGAAGAAAA
rJMSF012M24-          TGATGGAATCAATCACAGCTTTGACCTTTCCATGATATCTCTGATCCTTTTTGAAGAAAA
                      ____________________________________________________________
consensus             TGATGGAATCAATCACAGCTTTGACCTTTCCATGATATCTCTGATCCTTTTTGAAGAAAA
 
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rJMFF033P17-          CAGAAACAGCAGGAATGCCTTTGACCCGCAGTCGCTCCCCCAGCAGCTTGCCTATTTTTG
JMFN018B12+           CAGAAACAGCAGGAATGCCTTTGACCCGCAGTCGCTCCCCCAGCAACTTGCCTATTTTTG
JMSF001H08+           CAGAAACAGCAGGAATGCCTTTGACCCGCAGTCGCTCCCCCAGCAGCTTGCCTATTTTTG
rJMSF001H08-          CAGAAACAGCAGGAATGCCTTTGACCCGCAGTCGCTCCCCCAGCAGCTTGCCTATTTTTG
JMFF033P17+           CAGAAACAGCAGGAATGCCTTTGACCCGCAGTCGCTCCCCCAGCAGCTTGCCTATTTTTG
rJMSF012M24-          CAGAAACAGCAGGAATGCCTTTGACCCGCAGTCGCTCCCCCAGCAGCTTGCCTATTTTTG
                      ____________________________________________________________
consensus             CAGAAACAGCAGGAATGCCTTTGACCCGCAGTCGCTCCCCCAGCAGCTTGCCTATTTTTG
 
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rJMFF033P17-          CAGCAGCAGCAACATCCCGGGTGTTTTCTTTCGCTTCTATCATCCCCAACCTCAAACTCT
JMFN018B12+           CAGCAGCAGCAACATCCCGCCTGTTTTCTTTCGCTTCTATCATCCCCAACCTCAAACTCT
JMSF001H08+           CAGCAGCAGCAACATCCCGGGTGTTTTCTTTCGCTTCTATCATCCCCAACCTCAAACTCT
rJMSF001H08-          CAGCAGCAGCAACATCCCGGGTGTTTTCTTTCGCTTCTATCATCCCCAACCTCAAACTCT
JMFF033P17+           CAGCAGCAGCAACATCCCGGGTGTTTTCTTTCGCTTCTATCATCCCCAACCTCAAACTCT
rJMSF012M24-          CAGCAGCAGCAACATCCCGGGTGTTTTCTTTCGCTTCTATCATCCCCAACCTCAAACTCT
                      ____________________________________________________________
consensus             CAGCAGCAGCAACATCCCGGGTGTTTTCTTTCGCTTCTATCATCCCCAACCTCAAACTCT
 
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rJMFF033P17-          TCTCTTGTGTGCTGGCAGCTGTGGCAACTGTTGCACTTGGTGTGTGGACTACTTGAGCAT
JMFN018B12+           TCTCTTGTGTGCTGGCAGCTGTGGCAACTGTTGCACTTGGTGTGTGGACTACTTGAGCAT
JMSF001H08+           TCTCTTGTGTGCTGGCAGCTGTGGCAACTGTTGCACTTGGTGTGTGGACTACTTGAGCAT
rJMSF001H08-          TCTCTTGTGTGCTGGCAGCTGTGGCAACTGTTGCACTTGGTGTGTGGACTACTTGAGCAT
JMFF033P17+           TCTCTTGTGTGCTGGCAGCTGTGGCAACTGTTGCACTTGGTGTGTGGACTACTTGAGCAT
JMSF012M24+                                                                   GCAT
rJMSF012M24-          TCTCTTGTGTGCTGGCAGCTGTGGCAACTGTTGCACTTGGTGTGTGGACTACTTGAGCAT
                      ____________________________________________________________
consensus             TCTCTTGTGTGCTGGCAGCTGTGGCAACTGTTGCACTTGGTGTGTGGACTACTTGAGCAT
 
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rJMFF033P17-          TCACATATTTGTTGGTGAAGTGCATCCTCAAGACATAAGGTTTGAGGAACTTTGTCACTC
JMFN018B12+           TCACATACTTGTTCGTGAAGTGCATCCTCAACACATAAGGTTTGAGGAACTTTGTGACTC
JMSF001H08+           TCACATATTTGTTGGTGAAGTGCATCCTCAAGACATAAGGTTTGAGGAACTTTGTCACTC
rJMSF001H08-          TCACATATTTGTTGGTGAAGTGCATCCTCAAGACATAAGGTTTGAGGAACTTTGTCACTC
JMFF033P17+           TCACATATTTGTTGGTGAAGTGCATCCTCAAGACATAAGGTTTGAGGAACTTTGTCACTC
JMSF012M24+           TCACATATTTGTTGGTGAAGTGCATCCTCAAGACATAAGGTTTGAGGAACTTTGTCACTC
rJMSF012M24-          TCACATATTTGTTGGTGAAGTGCATCCTCAAGACATAAGGTTTGAGGAACTTTGTCACTC
                      ____________________________________________________________
consensus             TCACATATTTGTTGGTGAAGTGCATCCTCAAGACATAAGGTTTGAGGAACTTTGTCACTC
 
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rJMFF033P17-          TTTCTGGTCTAACTGGTGGAGGAATAACCATTTCTGCTAAGGGGAATAAATCGATTATCC
JMFN018B12+           TTTCTGGTCTAACTGGTGGAGGAATAACCATTTCTGCTAAGGGGAATAAATCGATTGTCC
JMSF001H08+           TTTCTGGTCTAACTGGTGGAGGAATAACCATTTCTGCTAAGGGGAATAAATCGATTATCC
rJMSF001H08-          TTTCTGGTCTAACTGGTGGAGGAATAACCATTTCTGCTAAGGGGAATAAATCGATTATCC
JMFF033P17+           TTTCTGGTCTAACTGGTGGAGGAATAACCATTTCTGCTAAGGGGAATAAATCGATTATCC
JMSF012M24+           TTTCTGGTCTAACTGGTGGAGGAATAACCATTTCTGCTAAGGGGAATAAATCGATTATCC
rJMSF012M24-          TTTCTGGTCTAACTGGTGGAGGAATAACCATTTCTGCTAAGGGGAATAAATCGATTATCC
                      ____________________________________________________________
consensus             TTTCTGGTCTAACTGGTGGAGGAATAACCATTTCTGCTAAGGGGAATAAATCGATTATCC
 
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rJMFF033P17-          GACAATGAAGTGAGTAGGAAAACTAACGCCGAGACTTTGAGTTGGAGATGCCGAGTGCGG
JMFN018B12+           GACCATGAAGTGAGTAGGAAAACTAACGCCG-GACTTTGAGTTGGAGATGCCGAGTGCGG
JMSF001H08+           GACAATGAAGTGAGTAGGAAAACTAACGCCGAGACTTTGAGTTGGAGATGCCGAGTGCGG
rJMSF001H08-          GACAATGAAGTGAGTAGGAAAACTAACGCCGAGACTTTGAGTTGGAGATGCCGAGTGCGG
JMFF033P17+           GACAATGAAGTGAGTAGGAAAACTAACGCCGAGACTTTGAGTTGGAGATGCCGAGTGCGG
JMSF012M24+           GACAATGAAGTGAGTAGGAAAACTAACGCCGAGACTTTGAGTTGGAGATGCCGAGTGCGG
rJMSF012M24-          GACAATGAAGTGAGTAGGAAAACTAACGCCGAGACTTTGAGTTGGAGATGCCGAGTGCGG
                      ____________________________________________________________
consensus             GACAATGAAGTGAGTAGGAAAACTAACGCCGAGACTTTGAGTTGGAGATGCCGAGTGCGG
 
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rJMFF033P17-          AGA                                                         
JMFN018B12+           AGAACCGGAGAAGCCGAGGGCGGAG                                   
JMSF001H08+           AGAACCGGAGGAGCCGAGGGCGGAGGCCGGAGGCCGTGAGCCGGAGAAGGAAGTAAAC  
rJMSF001H08-          AGAACCGGAGGAGCCGAGGGCGGAGGCCGGAGGCCGTGAGCCGGAGAAGGAAGTAAAC  
JMFF033P17+           AGAACCGGAGGAGCCGAGGGCGGAGGCCGGAGGCCGTGAGCCGGAGAAGGAAGTAAAC  
JMSF012M24+           AGAACCGGAGGAGCCGAGGGCGGAGGCCGGAGGCCGTGAGCCGGAGAAGGAAGTAAAC  
rJMSF012M24-          AGAACCGGAGGAGCCGAGGGCGGAGGCCGGAGGCCGTGAGCCGGAGAAGGAAGTAAACGA
                      ____________________________________________________________
consensus             AGAACCGGAGGAGCCGAGGGCGGAGGCCGGAGGCCGTGAGCCGGAGAAGGAAGTAAACGA