Contig 001308:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012J01Sequence435018860emb|CDP03562.1|4e-21unnamed protein product [Coffea canephora]730001308 (3)ref|XP_010112715.1|2e-59CUGBP Elav-like family member 5 [Morus notabilis] gb|EXC34673.1| CUGBP Elav-like
JMSF045O14Sequence672006706 (2)ref|XP_009618181.1|3e-90PREDICTED: CUGBP Elav-like family member 5 [Nicotiana tomentosiformis]589001308 (3)gb|AFK43647.1|2e-50unknown [Medicago truncatula]
JMSF051G15Sequence672006706 (2)emb|CDP03562.1|4e-85unnamed protein product [Coffea canephora]691001308 (3)gb|KDP21546.1|4e-58hypothetical protein JCGZ_22017 [Jatropha curcas]

Alignment

This contig is upended


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rJMSF051G15+                                                        TCACCCAGATTGAC
                      ____________________________________________________________
consensus                                                           TCACCCAGATTGAC
 
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rJMSF051G15+          TCCAAGAAATTATGCATTGTCACCTACAAGTTATTTAAGATCTGCTTACTCTGTGCCTGG
                      ____________________________________________________________
consensus             TCCAAGAAATTATGCATTGTCACCTACAAGTTATTTAAGATCTGCTTACTCTGTGCCTGG
 
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rJMSF051G15+          GGTTCAGTATCCTGTGCCATATCCTGGAGGAATTGTGAGCAATAGACCTTTTAGTAATTC
                      ____________________________________________________________
consensus             GGTTCAGTATCCTGTGCCATATCCTGGAGGAATTGTGAGCAATAGACCTTTTAGTAATTC
 
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rJMSF051G15+          TCCTGGTGCTCAACACCCTGGTACTGCCTACAGCCAATCTGCAGCATCTTCAAGCATCAA
                      ____________________________________________________________
consensus             TCCTGGTGCTCAACACCCTGGTACTGCCTACAGCCAATCTGCAGCATCTTCAAGCATCAA
 
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rJMSF051G15+          CTCAGGATCAGGGGGTCAGATTGAAGGTCCACCTGGTGCTAATTTATTTATTTACCATAT
rJMSF045O14+                    GGGGGTCAGATTGAAGGTCCACCTGGTGCTAATTTATTTATTTACCATAT
rJMSF012J01+                    GGGGCTCAGGTTGAAGGTCCACCGGGTGCTAATTTATTTATTTACCATAT
                      ____________________________________________________________
consensus             CTCAGGATCAGGGGGTCAGATTGAAGGTCCACCTGGTGCTAATTTATTTATTTACCATAT
 
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rJMSF051G15+          TCCTCAAGAATTTGGTGATCAGGAGCTTGCAAATGCATTTCAACCATTTGGTAGGGTGTT
rJMSF045O14+          TCCTCAAGAATTTGGTGATCAGGAGCTTGCAAATGCATTTCAACCATTTGGTAGGGTGTT
rJMSF012J01+          TCCTCAAGAATTTGGTGACCAAGAGCTTGCAAATGTATTTCAGCCTTTTGGTAGGATCTT
                      ____________________________________________________________
consensus             TCCTCAAGAATTTGGTGATCAGGAGCTTGCAAATGCATTTCAACCATTTGGTAGGGTGTT
 
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rJMSF051G15+          GAGTGCTAAGGTTTACATTGACAAGGCAACTGGTGTTAGCAAATGTTTCGGATTTGTGAG
rJMSF045O14+          GAGTGCTAAGGTTTACATTGACAAGGCAACTGGTGTTAGCAAATGTTTCGGATTTGTGAG
rJMSF012J01+          GAGTGCTAAGGTTTTTGTTGACAAGGCAACTGGTGTTAGCAAATGTTTTGGGTTTGTCAG
                      ____________________________________________________________
consensus             GAGTGCTAAGGTTTACATTGACAAGGCAACTGGTGTTAGCAAATGTTTCGGATTTGTGAG
 
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rJMSF051G15+          TTACGACTCTCCCGAAGCTGCACAGACTGCAATAAACAGAATGAATGGCTGCCAGTTAAG
rJMSF045O14+          TTACGACTCTCCCGAAGCTGCACAGACTGCAATAAACAGAATGAATGGCTGCCAGTTAAG
rJMSF012J01+          CTACGACTCTCCAGCAGCTGCACAAACGGCAATCAGCAGGATGAATGGCTTCCAATTAAG
                      ____________________________________________________________
consensus             TTACGACTCTCCCGAAGCTGCACAGACTGCAATAAACAGAATGAATGGCTGCCAGTTAAG
 
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rJMSF051G15+          TGGTAAAAAATTGAAGGTTCAACTTAAAAGAGACAATAAACAAAGCAAACCTTATTGAT 
rJMSF045O14+          TGGTAAAAAATTGAAGGTTCAACTTAAAAGAGACAATAAACAAAGCAAACCTTATTGAT 
rJMSF012J01+          TGGTAAAAAATTGAAGGTTCAGCTTAAAAGAGACAATAAACAAAGTAAACCTTATTGATA
                      ____________________________________________________________
consensus             TGGTAAAAAATTGAAGGTTCAACTTAAAAGAGACAATAAACAAAGCAAACCTTATTGATA
 
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rJMSF012J01+          TCAACAAGGTCAGGTATGGAAGGAAGCTGATATTCTTTACAAGATGGTTACATGCTATAG
                      ____________________________________________________________
consensus             TCAACAAGGTCAGGTATGGAAGGAAGCTGATATTCTTTACAAGATGGTTACATGCTATAG
 
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rJMSF012J01+          TTGTAAGGGAGAACACTGCATTGGGAGCAATTGAGGAGTGACTTATGATGATTAACAACT
                      ____________________________________________________________
consensus             TTGTAAGGGAGAACACTGCATTGGGAGCAATTGAGGAGTGACTTATGATGATTAACAACT
 
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rJMSF012J01+          ACTTGGCTACTCAATTGTGTTTTTAGTCTCCTTATGGGATTCAAGTCCCAGAAACTTGTA
                      ____________________________________________________________
consensus             ACTTGGCTACTCAATTGTGTTTTTAGTCTCCTTATGGGATTCAAGTCCCAGAAACTTGTA
 
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rJMSF012J01+          ATTCTTGATTTATTCTTGTGCCACTGTAATTTTAATTTCATGTAACATGGATTTTCATTT
                      ____________________________________________________________
consensus             ATTCTTGATTTATTCTTGTGCCACTGTAATTTTAATTTCATGTAACATGGATTTTCATTT
 
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rJMSF012J01+          AGACATTAGTTAATTGATTGATTCTTCCACCCAATAGACCTTAATGTTCTCAAGAAGATG
                      ____________________________________________________________
consensus             AGACATTAGTTAATTGATTGATTCTTCCACCCAATAGACCTTAATGTTCTCAAGAAGATG