Contig 001307:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012H15Sequence505002143 (2)ref|XP_009792620.1|5e-18PREDICTED: UPF0481 protein At3g47200-like [Nicotiana sylvestris] ref|XP_00979262723001307 (2)gb|EYU33527.1|2e-59hypothetical protein MIMGU_mgv1a020659mg, partial [Erythranthe guttata]
JMSF031E03Sequence525002143 (2)ref|XP_006360884.1|4e-23PREDICTED: putative UPF0481 protein At3g02645-like [Solanum tuberosum]764001307 (2)gb|EYU33527.1|2e-59hypothetical protein MIMGU_mgv1a020659mg, partial [Erythranthe guttata]

Alignment

This contig is upended


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rJMSF031E03+                        GATGAAGGGGCACTTACTTCAGATAGTTCACCATCTTTGCCATCCT
rJMSF012H15+                                                                   CCT
                      ____________________________________________________________
consensus                           GATGAAGGGGCACTTACTTCAGATAGTTCACCATCTTTGCCATCCT
 
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rJMSF031E03+          CAAAATGGTGGGATTCAGGAAGAGAGGCATTATNGGACATTATGTTTCCCTTGCAGCCTG
rJMSF012H15+          CAAAATGGTGGGATTCAGGAAGAGAGGCATTATTGGACATTATGTTTCCCTTGCAGCCTG
                      ____________________________________________________________
consensus             CAAAATGGTGGGATTCAGGAAGAGAGGCATTATTGGACATTATGTTTCCCTTGCAGCCTG
 
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rJMSF031E03+          GGGAAACAATCACAAGATTCTAAAGTTGGATCATCCGATATACGAACAGCAACCGAGCTC
rJMSF012H15+          GGGAAACAATCACAAGATTCTAAAGTTGGATCATCCGATATACGAACAGCAACCGAGCTC
                      ____________________________________________________________
consensus             GGGAAACAATCACAAGATTCTAAAGTTGGATCATCCGATATACGAACAGCAACCGAGCTC
 
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rJMSF031E03+          CAAGAAGCAGGAGTTAACCTTAAAAAGGTTGTCAAGAGCTCGAGTCTATTCCACATAAAG
rJMSF012H15+          CAAGAAGCAGGAGTTAACCTTAAAAAGGTTGTCAAGAGCTCGAGTCTATTCCACATAAAG
                      ____________________________________________________________
consensus             CAAGAAGCAGGAGTTAACCTTAAAAAGGTTGTCAAGAGCTCGAGTCTATTCCACATAAAG
 
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rJMSF031E03+          TTCAATCATGCTGAACTGGAGATCCCCAAGTTCCATATCACTGATCCAACAGAGACATTC
rJMSF012H15+          TTCAATCATGCTGAACTGGAGATCCCCAAGTTCCATATCACTGATCCAACAGAGACATTC
                      ____________________________________________________________
consensus             TTCAATCATGCTGAACTGGAGATCCCCAAGTTCCATATCACTGATCCAACAGAGACATTC
 
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rJMSF031E03+          TTCAGAAACATGATAGCCTACGAGCAACATTCGTGTGACAAGAATAACATGTATTTCACA
rJMSF012H15+          TTCAGAAACATGATAGCCTACGAGCAACATTCGTGTGACAAGAATAACATGTATTTCACA
                      ____________________________________________________________
consensus             TTCAGAAACATGATAGCCTACGAGCAACATTCGTGTGACAAGAATAACATGTATTTCACA
 
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rJMSF031E03+          GATTATGCCCAGTTGATGGATAATCTGATCAACACAGAGAAAGATGTGAACTTGTTTCGG
rJMSF012H15+          GATTATGCCCAGTTGATGGATAATCTGATCAACACAGAGAAAGATGTGAACTTGTTTCGG
                      ____________________________________________________________
consensus             GATTATGCCCAGTTGATGGATAATCTGATCAACACAGAGAAAGATGTGAACTTGTTTCGG
 
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rJMSF031E03+          ATGAATGGAGTGCTCGTAAATTGGCTGGGCGATGACAAAGAAGTGACTGATCTTTTTAAC
rJMSF012H15+          ATGAATGGAGTGCTCGTAAATTGGCTGGGCGATGACAAAGAAGTGACTGATCTTTTTAAC
                      ____________________________________________________________
consensus             ATGAATGGAGTGCTCGTAAATTGGCTGGGCGATGACAAAGAAGTGACTGATCTTTTTAAC
 
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rJMSF031E03+          AGGCTTTGTAAAGGGGTTGTGTATTCTTCTTGTGATGGCTTCTATTACAGTGATGTGTGC
rJMSF012H15+          AGGCTTTGTAAAGGGGTTGTGTATTCTTCTTGTGATGGCTTCTATTACAGTGATGTGTGC
                      ____________________________________________________________
consensus             AGGCTTTGTAAAGGGGTTGTGTATTCTTCTTGTGATGGCTTCTATTACAGTGATGTGTGC
 
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rJMSF031E03+          AACAAATTGAATGGACACTACAACAAACCATGGAATGTGATGATGGCAAAACTAAGGCAC
rJMSF012H15+          AACAAATTGAATGGACACTACAACAAACCATGGAATGTGATGATGGCAAAACTAAGGCAC
                      ____________________________________________________________
consensus             AACAAATTGAATGGACACTACAACAAACCATGGAATGTGATGATGGCAAAACTAAGGCAC
 
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rJMSF031E03+          GATTACTTCAACACTCCCTGGGCTGGGATTTCTACCATTGCAGCTGTATTTCTTCTTTCG
rJMSF012H15+          GATTACTTCAACACTCCCTGGGCTGGGATTTCTACCATTGCAGCTGTATTTCTTCTTTCG
                      ____________________________________________________________
consensus             GATTACTTCAACACTCCCTGGGCTGGGATTTCTACCATTGCAGCTGTATTTCTTCTTTCG
 
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rJMSF031E03+          CTCACTATTGCACAGACTGTTATAGCTGTGCTTGATCTGCGTAAGTAATAGTCATGTTTT
rJMSF012H15+          CTCACTATTGCACAGACTGTTATAGCTGTGCTTGATCTGCGTAAGTAATAGTCATGTTTT
                      ____________________________________________________________
consensus             CTCACTATTGCACAGACTGTTATAGCTGTGCTTGATCTGCGTAAGTAATAGTCATGTTTT
 
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rJMSF031E03+          GTTTC-AAGTATTTTTCCCCTGTAAAATATATATCAAGAC                    
rJMSF012H15+          GTTTCAAAGTATTTTTCCCCTGTAAAATATATATCAAGACCTTGATTGTGTAATCCAACT
                      ____________________________________________________________
consensus             GTTTCAAAGTATTTTTCCCCTGTAAAATATATATCAAGACCTTGATTGTGTAATCCAACT