Contig 001303:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011D10Sequence268013423 (2)ref|XP_009595975.1|7e-23PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 isoform X2 [Nicot739001303 (2)gb|AGV75878.1|1e-84U3 small nucleolar ribonucleoprotein [Nicotiana benthamiana]
JMSF031A02Sequence638013423 (2)ref|XP_006344411.1|2e-29PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10-like isoform X2 [722001303 (2)gb|AGV75878.1|8e-82U3 small nucleolar ribonucleoprotein [Nicotiana benthamiana]

Alignment

This contig is upended


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rJMSF031A02+                                                                  CGAA
rJMSF011D10+                                                   CCAGAAGAATTAATTCGAA
                      ____________________________________________________________
consensus                                                      CCAGAAGAATTAATTCGAA
 
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rJMSF031A02+          AACGGGTCCNTGAGGAACAATTTGATGATGTTCAGAAGCCTCCTAGTTTGCCATCAAGAG
rJMSF011D10+          AACGGGTCCTTGAGGAACAATTTGATGATGTTCAGAAGCCTCCTAGTTTGCCATCAAGAG
                      ____________________________________________________________
consensus             AACGGGTCCTTGAGGAACAATTTGATGATGTTCAGAAGCCTCCTAGTTTGCCATCAAGAG
 
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rJMSF031A02+          CACCAAGAGAGATAAAAGAAGTGGATGATAATAAGAGCAAAAAGGGCCTTGCTGAAGTTT
rJMSF011D10+          CACCAAGAGAGATAAAAGAAGTGGATGATAATAAGAGCAAAAAGGGCCTTGCTGAAGTTT
                      ____________________________________________________________
consensus             CACCAAGAGAGATAAAAGAAGTGGATGATAATAAGAGCAAAAAGGGCCTTGCTGAAGTTT
 
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rJMSF031A02+          ATGAGGAGGAATATGTCCAGAAGACTGGCCTTGTTTCAACAGCAATGACTTTTTCTGATG
rJMSF011D10+          ATGAGGAGGAATATGTCCAGAAGACTGGCCTTGTTTCAACAGCAATGACTTTTTCTGATG
                      ____________________________________________________________
consensus             ATGAGGAGGAATATGTCCAGAAGACTGGCCTTGTTTCAACAGCAATGACTTTTTCTGATG
 
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rJMSF031A02+          AGCAAAAGAAAGAGGCAACTATGCTGTTTAAGAAACTCTGCCTGAAGTTGGATGCATTAT
rJMSF011D10+          AGCAAAAGAAAGAGGCAACTATGCTGTTTAAGAAACTCTGCCTGAAGTTGGATGCATTAT
                      ____________________________________________________________
consensus             AGCAAAAGAAAGAGGCAACTATGCTGTTTAAGAAACTCTGCCTGAAGTTGGATGCATTAT
 
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rJMSF031A02+          CTCATTTCCATTTCACACCAAAACCGGTCATAGAAGATATGTCTATTCAAGCAAGTGTCC
rJMSF011D10+          CTCATTTCCATTTCACACCAAAACCGGTCATAGAAGATATGTCTATTCAAGCAAGTGTCC
                      ____________________________________________________________
consensus             CTCATTTCCATTTCACACCAAAACCGGTCATAGAAGATATGTCTATTCAAGCAAGTGTCC
 
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rJMSF031A02+          CTGCCCTTGCAATGGAAGAGATTGCACCAGTGGCTACCTCTGATGCTGCTATGCTGGCTC
rJMSF011D10+          CTGCCCTTGCAATGGAAGAGATTGCACCAGTGGCTACCTCTGATGCTGCTATGCTGGCTC
                      ____________________________________________________________
consensus             CTGCCCTTGCAATGGAAGAGATTGCACCAGTGGCTACCTCTGATGCTGCTATGCTGGCTC
 
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rJMSF031A02+          CTGAGGAAGTTTTTATTGGCAAAGGAGATATTAAAGAAGAAGCAGAGCTGACACAAGCAG
rJMSF011D10+          CTGAGGAAGTTTTTATTGGCAAAGGAGATATTAAAGAAGAAGCAGAGCTGACACAAGCAG
                      ____________________________________________________________
consensus             CTGAGGAAGTTTTTATTGGCAAAGGAGATATTAAAGAAGAAGCAGAGCTGACACAAGCAG
 
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rJMSF031A02+          AGAGGAAGAGGAGGAGAGCAAAAAAGAAAAGTAAATTCAAAGCGGAGGCATCGAACAGGA
rJMSF011D10+          AGAGGAAGAGGAGGAGAGCAAAAAAGAAAAGTAAATTCAAAGCGGAGGCATCGAACAGGA
                      ____________________________________________________________
consensus             AGAGGAAGAGGAGGAGAGCAAAAAAGAAAAGTAAATTCAAAGCGGAGGCATCGAACAGGA
 
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rJMSF031A02+          AGGCACCTCAAAATACCTCGAAAACAGATTCCGAGAGCAAGGAACAATCATGACTGTACT
rJMSF011D10+          AGGCACCTCAAAATACCTCGAAAACAGATTCCGAGAGCAAGGAACAATCATGACTGTACT
                      ____________________________________________________________
consensus             AGGCACCTCAAAATACCTCGAAAACAGATTCCGAGAGCAAGGAACAATCATGACTGTACT
 
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rJMSF031A02+          AGGATTGTATTCTAAGTCTTTCTGCTCCCTGAGAACAATATGCAAGTTCAAGCGGGAATT
rJMSF011D10+          AGGATTGTATTCTAAGTCTTTCTGCTCCCTGAGAACAATATGCAAGTTCAAGCGGGAATT
                      ____________________________________________________________
consensus             AGGATTGTATTCTAAGTCTTTCTGCTCCCTGAGAACAATATGCAAGTTCAAGCGGGAATT
 
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rJMSF031A02+          GGGCAACGTGAAGGCAGGTTAGGATTTTGAGGCATTATAAAAATATAGTTTTTGTTTCCC
rJMSF011D10+          GGGCAACGTGAAGGCAGGTTAGGATTTTGAGGCATTATAAAAATATAGTTTTTGTTTCCC
                      ____________________________________________________________
consensus             GGGCAACGTGAAGGCAGGTTAGGATTTTGAGGCATTATAAAAATATAGTTTTTGTTTCCC
 
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rJMSF031A02+          GTAGTATTGATTTATTGCTATTAGTTAATTTTACGGTGTATTTCTATTCTTGAAAAAA  
rJMSF011D10+          GTAGTATTGATTTATTGCTATTAGTTAATTTTACGGTGTATTTCTATTCTTGAAAAAAAT
                      ____________________________________________________________
consensus             GTAGTATTGATTTATTGCTATTAGTTAATTTTACGGTGTATTTCTATTCTTGAAAAAAAT