Contig 001300:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026A20Sequence539005053 (4)ref|XP_004299037.1|5e-30PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A706001300 (4)ref|XP_006344171.1|1e-45PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A
JMFF028P22Sequence602005053 (4)ref|XP_011076286.1|2e-39PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A673001300 (4)ref|XP_006344171.1|4e-46PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A
JMSF011A08Sequence236005053 (4)746001300 (4)ref|XP_006344171.1|3e-56PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A
JMSF019G23Sequence248005053 (4)710001300 (4)ref|XP_006344171.1|8e-59PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF028P22+ ATCGAATGGCCTCAACTGAAACATCG
rJMFF026A20+ AATATAGCCGGAGGCACCCCACCGCTTNTATCCAATNGAATGGCCTCAACTGAAACATCG
rJMSF019G23+ ATCGAATGGCCTCAACTGAAACATCG
rJMSF011A08+ GAATGGCCTCAACTGAAACATCG
                      ____________________________________________________________
consensus AATATAGCCGGAGGCACCCCACCGCTTNTATCCAATCGAATGGCCTCAACTGAAACATCG
 
. : . : . : . : . : . :
rJMFF028P22+ ACCATTGCTTCAACTGCAGCAACTTTAGAGTCGTGTTACCAAGCTCCAGAGTCGCAGAAA
rJMFF026A20+ ACCATTGCTTCAACTGCAGCAACTTTAGAGTCGTGTTACCAAGCTCCAGAGTCGCAGAAA
rJMSF019G23+ ACCATTGCTTCAACTGCAGCAACTTTAGAGTCGTGTTACCAAGCTCCAGAGTCGCAGAAA
rJMSF011A08+ ACCATTGCTTCAACTGCAGCAACTTTAGAGTCGTGTTACCAAGCTCCAGAGTCGCAGAAA
                      ____________________________________________________________
consensus ACCATTGCTTCAACTGCAGCAACTTTAGAGTCGTGTTACCAAGCTCCAGAGTCGCAGAAA
 
. : . : . : . : . : . :
rJMFF028P22+ GCGTTGAAGCCATCTCAAAAATGGGATATTTACTCGTATGGAGTGATCTTGTTGGAAATG
rJMFF026A20+ GCGTTGAAGCCATCTCAAAAATGGGATATTTACTCGTATGGAGTGATCTTGTTGGAAATG
rJMSF019G23+ GCGTTGAAGCCATCTCAAAAATGGGATATTTACTCGTATGGAGTGATCTTGTTGGAAATG
rJMSF011A08+ GCGTTGAAGCCATCTCAAAAATGGGATATTTACTCGTATGGAGTGATCTTGTTGGAAATG
                      ____________________________________________________________
consensus GCGTTGAAGCCATCTCAAAAATGGGATATTTACTCGTATGGAGTGATCTTGTTGGAAATG
 
. : . : . : . : . : . :
rJMFF028P22+ ATCACGGGAAGGTCTCCAATAGTCCACGTGGGCTCCACCGAAATGGATATAGTTAACTGG
rJMFF026A20+ ATCACGGGAAGGTCTCCAATAGTCCACGTGGGCTCCACCGAAATGGATATAGTTAACTGG
rJMSF019G23+ ATCACGGGAAGGTCTCCAATAGTCCACGTGGGCTCCACCGAAATGGATATAGTTAACTGG
rJMSF011A08+ ATCACGGGAAGGTCTCCAATAGTCCACGTGGGCTCCACCGAAATGGATATAGTTAACTGG
                      ____________________________________________________________
consensus ATCACGGGAAGGTCTCCAATAGTCCACGTGGGCTCCACCGAAATGGATATAGTTAACTGG
 
. : . : . : . : . : . :
rJMFF028P22+ CTTCACCTGTGCATCGACGAGAAGAAGCCACTTTCAGACGTGTTGGATCCATATCTAGCC
rJMFF026A20+ CTTCACCTGTGCATCGACGAGAAGAAGCCACTTTCAGACGTGTTGGATCCATATCTAGCC
rJMSF019G23+ CTTCACCTGTGCATCGACGAGAAGAAGCCACTTTCAGACGTGTTGGATCCATATCTAGCC
rJMSF011A08+ CTTCACCTGTGCATCGACGAGAAGAAGCCACTTTCAGACGTGTTGGATCCATATCTAGCC
                      ____________________________________________________________
consensus CTTCACCTGTGCATCGACGAGAAGAAGCCACTTTCAGACGTGTTGGATCCATATCTAGCC
 
. : . : . : . : . : . :
rJMFF028P22+ GAAGATGCAG--AAAGAAGAGGAGATGATAGCAATTCTAAATATCGCAATGGCGTGTGTG
rJMFF026A20+ GAAGATGCAG--AAAGAAGAGGAGATGATAGCAATTCTAAATATCGCAATGGCGTGTGTG
rJMSF019G23+ GAAGATGCAGATAAAGAAGAGGAGATGATAGCAATTCTAAATATCGCAATGGCGTGTGTG
rJMSF011A08+ GAAGATGCAGATAAAGAAGAGGAGATGATAGCAATTCTAAATATCGCAATGGCGTGTGTG
                      ____________________________________________________________
consensus GAAGATGCAGATAAAGAAGAGGAGATGATAGCAATTCTAAATATCGCAATGGCGTGTGTG
 
. : . : . : . : . : . :
rJMFF028P22+ CACAGCAGCCCCGAGAGGAGACCTTCAATGAGGTACATCTTGGAAGCCTTGGAAAGGCTA
rJMFF026A20+ CACAGCAGCCCCGAGAGGAGACCTTCAATGAGGTACATCTTGGAAGCCTTGGAAAGGCTA
rJMSF019G23+ CACAGCAGCCCCGAGAGGAGACCTTCAATGAGGTACATCTTGGAAGCCTTGGAAAGGCTA
rJMSF011A08+ CACAGCAGCCCCGAGAGGAGACCTTCAATGAGGTACATCTTGGAAGCCTTGGAAAGGCTA
                      ____________________________________________________________
consensus CACAGCAGCCCCGAGAGGAGACCTTCAATGAGGTACATCTTGGAAGCCTTGGAAAGGCTA
 
. : . : . : . : . : . :
rJMFF028P22+ CCGGTGCCAACTGAACACTAATGCATTTACACACATCCCATAATCGGTTTCCTCGATCTT
rJMFF026A20+ CCGGTGCCAACTGAACACTAATGCATTTACACACATCCCATAATCGGTTTCCTCGATCTT
rJMSF019G23+ CCGGTGCCAACTGAACACTAATGCATTTACACACATCCCATAATCGGTTTCCTCGATCTT
rJMSF011A08+ CCGGTGCCAACTGAACACTAATGCATTTACACACATCCCATAATCGGTTTCCTCGATCTT
                      ____________________________________________________________
consensus CCGGTGCCAACTGAACACTAATGCATTTACACACATCCCATAATCGGTTTCCTCGATCTT
 
. : . : . : . : . : . :
rJMFF028P22+ CAAGAGATTAAAGGTATGTCTACCTTAGGAGTTAATTGTCTAATCGTGACATATTACTGT
rJMFF026A20+ CAAGAGATTAAAGGTATGTCTACCTTAGGAGTTAATTGTCTAATCGTGACATATTACTGT
rJMSF019G23+ CAAGAGATTAAAGGTATGTCTACCTTAGGAGTTAATTGTCTAATCGTGACATATTACTGT
rJMSF011A08+ CAAGAGATTAAAGGTATGTCTACCTTAGGAGTTAATTGTCTAATCGTGACATATTACTGT
                      ____________________________________________________________
consensus CAAGAGATTAAAGGTATGTCTACCTTAGGAGTTAATTGTCTAATCGTGACATATTACTGT
 
. : . : . : . : . : . :
rJMFF028P22+ TTCTTACTAGTGTAACTGTGAAAGGTGTCGCGACATACTTGTCCTCTTGTTGATTTGGAT
rJMFF026A20+ TTCTTACTAGTGTAACTGTGAAAGGTGTCGCGACATACTTGTCCTCTTGTTGATTTGGAT
rJMSF019G23+ TTCTTACTAGTGTAACTGTGAAAGGTGTCGCGACATACTTGTCCTCTTGTTGATTTGGAT
rJMSF011A08+ TTCTTACTAGTGTAACTGTGAAAGGTGTCGCGACATACTTGTCCTCTTGTTGATTTGGAT
                      ____________________________________________________________
consensus TTCTTACTAGTGTAACTGTGAAAGGTGTCGCGACATACTTGTCCTCTTGTTGATTTGGAT
 
. : . : . : . : . : . :
rJMFF028P22+ TATATGATTCTCTTGTTTCTTTGTTGTTGCCTTTAGCTTTCTTTCATTCGGTAGTACATA
rJMFF026A20+ TATATGATTCTCTTGTTTCTTTGTTGTTGCCTTTAGCTTTCTTTCATTCGGTAGTACATA
rJMSF019G23+ TATATGATTCTCTTGTTTCTTTGTTGTTGCCTTTAGCTTTCTTTCATTCGGTAGTACATA
rJMSF011A08+ TATATGATTCTCTTGTTTCTTTGTTGTTGCCTTTAGCTTTCTTTCATTCGGTAGTACATA
                      ____________________________________________________________
consensus TATATGATTCTCTTGTTTCTTTGTTGTTGCCTTTAGCTTTCTTTCATTCGGTAGTACATA
 
. : . : . : . : . : . :
rJMFF028P22+ GCGGGACAGCTGTAGTGAATTCGTTGCAACATGACCTGTACAAAATA
rJMFF026A20+ GCGGGACAGCTGTAGTGAATTCGTTGCAACACGACCTGTACAAAATA
rJMSF019G23+ GCGGGACAGCTGTAGTGAATTCGTTGCAACATGACCTGTACAAAATAATGTCGATGAAAT
rJMSF011A08+ GCGGGACAGCTGTAGTGAATTCGTTGCAACATGACCTGTACAAAATAATGTCGATGAAAT
                      ____________________________________________________________
consensus GCGGGACAGCTGTAGTGAATTCGTTGCAACATGACCTGTACAAAATAATGTCGATGAAAT
 
. : . : . : . : . : . :
rJMSF019G23+ TATGGGATTTCCTGTGCAAGT
rJMSF011A08+ TATGGGATTTCCTGTGCAAGTTGGGTAGATAATACAAGCACTACCAACCAACCAATGATT
                      ____________________________________________________________
consensus TATGGGATTTCCTGTGCAAGTTGGGTAGATAATACAAGCACTACCAACCAACCAATGATT