| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF001I20 | Sequence | 337 | 007728 (6) | ref|XP_009619067.1| | 3e-26 | PREDICTED: nucleolar protein 6 isoform X3 [Nicotiana tomentosiformis] | 762 | 001297 (5) | ref|XP_004232410.1| | 2e-90 | PREDICTED: nucleolar protein 6 [Solanum lycopersicum] |
| JMSF002C19 | Sequence | 372 | 007728 (6) | ref|XP_009619067.1| | 8e-41 | PREDICTED: nucleolar protein 6 isoform X3 [Nicotiana tomentosiformis] | 748 | 001297 (5) | ref|XP_004232410.1| | 6e-87 | PREDICTED: nucleolar protein 6 [Solanum lycopersicum] |
| JMSF010B09 | Sequence | 209 | 007728 (6) | emb|CDP16827.1| | 2e-14 | unnamed protein product [Coffea canephora] | 539 | 001297 (5) | ref|XP_011099619.1| | 2e-35 | PREDICTED: nucleolar protein 6 isoform X3 [Sesamum indicum] |
| JMSF019L02 | Sequence | 493 | 007728 (6) | ref|XP_009619067.1| | 2e-66 | PREDICTED: nucleolar protein 6 isoform X3 [Nicotiana tomentosiformis] | 787 | 001297 (5) | ref|XP_009777139.1| | 1e-97 | PREDICTED: nucleolar protein 6 isoform X1 [Nicotiana sylvestris] ref|XP_00977714 |
| JMSF024G01 | Sequence | 684 | 007728 (6) | ref|XP_009619067.1| | 2e-99 | PREDICTED: nucleolar protein 6 isoform X3 [Nicotiana tomentosiformis] | 670 | 001297 (5) | ref|XP_009777139.1| | 7e-75 | PREDICTED: nucleolar protein 6 isoform X1 [Nicotiana sylvestris] ref|XP_00977714 |
This contig is upended
. : . : . : . : . : . :
rJMSF001I20+ AGANGGAAGTGATTTTACAACCAAGGATATGAAGGAAATCAATGTGGCTTTAAAAAAAG
rJMSF019L02+ GGATATGAAGGAAATCAATGTGGCTTTTAAAAAAG
____________________________________________________________
consensus AGANGGAAGTGATTTTACAACCAAGGATATGAAGGAAATCAATGTGGCTTTTAAAAAAG
. : . : . : . : . : . :
rJMSF001I20+ CAGAGANGAATCAGAAACAAAGATGCATGATGTAAGTCCAGCAATG-TTTTGGCTACTAA
rJMSF019L02+ CAGAGAAGAATCAGAAACAAAGATGCATGATGTAAGTCCAGCAATGTTTTTGGCTACTAA
____________________________________________________________
consensus CAGAGAAGAATCAGAAACAAAGATGCATGATGTAAGTCCAGCAATGTTTTTGGCTACTAA
. : . : . : . : . : . :
rJMSF001I20+ ATATGACCTNGCCTCTGAAGCTTGGACCAGATCAACACCAGCAATGACAGAGCTTAAGAG
rJMSF019L02+ ATATGACCTTGCCTCTGAAGCTTGGACCAGATCAACACCAGCAATGACAGAGCTTAAGAG
rJMSF024G01+ CCAGCAATGACAGAGCTTAAGAG
rJMSF002C19+ ATGACCTTGCCTCTGAAGCTTGGACCAGATCAACACCAGCAATGACAGAGCTTAAGAG
____________________________________________________________
consensus ATATGACCTTGCCTCTGAAGCTTGGACCAGATCAACACCAGCAATGACAGAGCTTAAGAG
. : . : . : . : . : . :
rJMSF001I20+ ATTAGTAGCATATGC-AACTAGCAGTGCAAATTTGCTGACCAAACTGATTTCCCAAGATG
rJMSF019L02+ ATTAGTAGCATATGC-AACTAGCAGTGCAAATTTGCTGACCAAACTGATTTCCCAAGATG
rJMSF024G01+ ATTAGTAGCATATGCAAACTAGCAGTGCAAATTTGCTGACCAAACTGATTTCCCAAGATG
rJMSF002C19+ ATTAGTAGCATATGC-AACTAGCAGTGCAAATTTGCTGACCAAACTGATTTCCCAAGATG
____________________________________________________________
consensus ATTAGTAGCATATGC-AACTAGCAGTGCAAATTTGCTGACCAAACTGATTTCCCAAGATG
. : . : . : . : . : . :
rJMSF001I20+ AATGTGATTCTGACGGCTGGAAGTGCCTTTTCCGCACACCTTTAAACAATTATGATGCCG
rJMSF019L02+ AATGTGATTCTGACGGCTGGAAGTGCCTTTTCCGCACACCTTTAAACAATTATGATGCCG
rJMSF024G01+ AATGTGATTCTGACGGCTGGAAGTGCCTTTTCCGCACACCTTTAAACAATTATGATGCCG
rJMSF002C19+ AATGTGATTCTGACGGCTGGAAGTGCCTTTTCCGCACACCTTTAAACAATTATGATGCCG
____________________________________________________________
consensus AATGTGATTCTGACGGCTGGAAGTGCCTTTTCCGCACACCTTTAAACAATTATGATGCCG
. : . : . : . : . : . :
rJMSF001I20+ TTGTTCTCCTTCACAGAGACAAATTACCCTATCCACACCATCTTCTTTTCCCATCTGAAC
rJMSF019L02+ TTGTTCTCCTTCACAGAGACAAATTACCCTATCCACACCATCTTCTTTTCCCATCTGAAC
rJMSF024G01+ TTGTTCTCCTTCACAGAGACAAATTACCCTATCCACACCATCTTCTTTTCCCATCTGAAC
rJMSF002C19+ TTGTTCTCCTTCACAGAGACAAATTACCCTATCCACACCATCTTCTTTTCCCATCTGAAC
____________________________________________________________
consensus TTGTTCTCCTTCACAGAGACAAATTACCCTATCCACACCATCTTCTTTTCCCATCTGAAC
. : . : . : . : . : . :
rJMSF001I20+ TCAAACAAGGACGGTGTGTGTTGCATGGCAAACCAACCAAGATTTTCCATCCTTTCATTG
rJMSF019L02+ TCAAACAAGGACGGTGTGTGTTGCATGGCAAACCAACCAAGATTTTCCATCCTTTCATTG
rJMSF024G01+ TCAAACAAGGACGGTGTGTGTTGCATGGCAAACCAACCAAGATTTTCCATCCTTTCATTG
rJMSF002C19+ TCAAACAAGGACGGTGTGTGTTGCATGGCAAACCAACCAAGATTTTCCATCCTTTCATTG
rJMSF010B09+ CAAACAAGGACGGTGTGTGTTGCANGGCAAACCAACCAAGATTTTCCATCCTCTCATTG
____________________________________________________________
consensus TCAAACAAGGACGGTGTGTGTTGCATGGCAAACCAACCAAGATTTTCCATCCTTTCATTG
. : . : . : . : . : . :
rJMSF001I20+ TTCCCGCAGACCTCAGAGGGAGGAGGTCTGAGGAATTGAAATCTAAGCTGATGGTGAACT
rJMSF019L02+ TTCCCGCAGACCTCAGAGGGAGGAGGTCTGAGGAATTGAAATCTAAGCTGATGGTGAACT
rJMSF024G01+ TTCCCGCAGACCTCAGAGGGAGGAGGTCTGAGGAATTGAAATCTAAGCTGATGGTGAACT
rJMSF002C19+ TTCCCGCAGACCTCAGAGGGAGGAGGTCTGAGGAATTGAAATCTAAGCTGATGGTGAACT
rJMSF010B09+ TTCCCGCAGACCTCAGNGGGAGGAGGTNTGAGGANTTGAAATCTAAGCTGNTGGTGAACT
____________________________________________________________
consensus TTCCCGCAGACCTCAGAGGGAGGAGGTCTGAGGAATTGAAATCTAAGCTGATGGTGAACT
. : . : . : . : . : . :
rJMSF001I20+ TTGATCCACTGAGGTGCTTTATTAGTGAAATTGAGAGAGAATTTCCAGACACGTTCAAGA
rJMSF019L02+ TTGATCCACTGAGGTGCTTTATTAGTGAAATTGAGAGAGAATTTCCAGACACGTTCAAGA
rJMSF024G01+ TTGATCCACTGAGGTGCTTTATTAGTGAAATTGAGAGAGAATTTCCAGACACGTTCAAGA
rJMSF002C19+ TTGATCCACTGAGGTGCTTTATTAGTGAAATTGAGAGAGAATTTCCAGACACGTTCAAGA
rJMSF010B09+ TTGATCCACTGAGGTGCTTTATTAGTGAAATTGAGAGAGNATTTCCAGACACGTTCAAGA
____________________________________________________________
consensus TTGATCCACTGAGGTGCTTTATTAGTGAAATTGAGAGAGAATTTCCAGACACGTTCAAGA
. : . : . : . : . : . :
rJMSF001I20+ TATGGTATGACTCGTTGGGTGGTGATGCCATCGGTCTCACTTGGGGAAAAGCTAGTTCAA
rJMSF019L02+ TATGGTATGACTCGTTGGGTGGTGATGCCATCGGTCTCACTTGGGGAAAAGCTAGTTCAA
rJMSF024G01+ TATGGTATGACTCGTTGGGTGGTGATGCCATCGGTCTCACTTGGGGAAAAGCTAGTTCAA
rJMSF002C19+ TATGGTATGACTCGTTGGGTGGTGATGCCATCGGTCTCACTTGGGGAAAAGCTAGTTCAA
rJMSF010B09+ TATGGTATGNCTCGTTNGGNGNTGATGCCATCGGTCTCACTNGGGGAAAAGCTAGTTCAA
____________________________________________________________
consensus TATGGTATGACTCGTTGGGTGGTGATGCCATCGGTCTCACTTGGGGAAAAGCTAGTTCAA
. : . : . : . : . : . :
rJMSF001I20+ AGAAACGAGAAAGGGATTCCATGGCCGAGGGCGAAGATCCACTTGATATACTGAAATCTG
rJMSF019L02+ AGAAACGAGAAAGGGATTCCATGGCCGAGGGCGAAGATCCACTTGATATACTGAAATCTG
rJMSF024G01+ AGAAACGAGAAAGGGATTCCATGGCCGAGGGCGAAGATCCACTTGATATACTGAAATCTG
rJMSF002C19+ AGAAACGAGAAAGGGATTCCATGGCCGAGGGCGAAGATCCACTTGATATACTGAAATCTG
rJMSF010B09+ AGAACCGAGAAAGGGATTCCATGGCCGAGGGCGAAGATCCACTTGATATACTGAAATCTG
____________________________________________________________
consensus AGAAACGAGAAAGGGATTCCATGGCCGAGGGCGAAGATCCACTTGATATACTGAAATCTG
. : . : . : . : . : . :
rJMSF001I20+ TTGGTGAAGTCGGGAAAGGCTTCGTGAGAAGTATTCATTTCCTTAAAGCCCGAAAATTAA
rJMSF019L02+ TTGGTGAAGTCGGGAAAGGCTTCGTGAGAAGTATTCATTTCCTTAAAGCCCGAAAATTAA
rJMSF024G01+ TTGGTGAAGTCGGGAAAGGCTTCGTGAGAAGTATTCATTTCCTTAAAGCCCGAAAATTAA
rJMSF002C19+ TTGGTGAAGTCGGGAAAGGCTTCGTGAGAAGTATTCATTTCCTTAAAGCCCGAAAATTAA
rJMSF010B09+ TNGGTGAAGTCGGGAANGGCTTCGTGAGAAGTATTCATTTCCTTAAAGCCCGAAAATNAA
____________________________________________________________
consensus TTGGTGAAGTCGGGAAAGGCTTCGTGAGAAGTATTCATTTCCTTAAAGCCCGAAAATTAA
. : . : . : . : . : . :
rJMSF001I20+ GCCAATGAAACAGTTTCACTTTTGTAGAAG-TTGATGATC
rJMSF019L02+ GCCAATGAAACAGTTTCACTTTTGTAGAAG-TTGATGATCATGTTGTAATATCAGTTA-T
rJMSF024G01+ GCCAATGAAACAGTTTCACTTTTGTAGAAG-TTGATGATCATGTTGTAATATCAGTTA-T
rJMSF002C19+ GCCAATGAAACAGTTTCACTTTTGTAGAAG-TTGATGATCATGTTGTAATATCAGTTA-T
rJMSF010B09+ GCCAATGAAACAGTTTCACTTTNGTNGAAGCNTGATAATCACGTTGTAATATCAGTTACT
____________________________________________________________
consensus GCCAATGAAACAGTTTCACTTTTGTAGAAG-TTGATGATCATGTTGTAATATCAGTTA-T
. : . : . : . : . : . :
rJMSF019L02+ TTGATGATTAGTAGTTTCACACACTGCAAAAT
rJMSF024G01+ TTGATGATTAGTAGTTTCACACACTGCAAAAT
rJMSF002C19+ TTGATGATTAGTAGTTTCACACACTGCAAAAT-TTTGGCCAACTGACTTTCAAAGGGACA
rJMSF010B09+ TTGATGATTAGTAGTTTCACACACTGCAAAATCTTTGGCCAACTGACTTTCAAAGGGACA
____________________________________________________________
consensus TTGATGATTAGTAGTTTCACACACTGCAAAATCTTTGGCCAACTGACTTTCAAAGGGACA
. : . : . : . : . : . :
rJMSF002C19+ ACAGATAGTTGCAGCATTGCATTGCGGCAGAACA
rJMSF010B09+ ACAGATAGTTGCAGCATTGCATTGCGGCAGAACATGTATATAATTTCTTAAGAGGNGTCC
____________________________________________________________
consensus ACAGATAGTTGCAGCATTGCATTGCGGCAGAACATGTATATAATTTCTTAAGAGGNGTCC