Contig 001294:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004E14Sequence334007284 (4)gb|AHL44983.1|9e-284-coumarate:coenzyme A ligase 4 [Fraxinus mandshurica]805001294 (4)ref|XP_009603383.1|6e-134PREDICTED: 4-coumarate--CoA ligase-like 7 [Nicotiana tomentosiformis]
JMFF035B02Sequence540007284 (4)ref|XP_009786809.1|2e-64PREDICTED: 4-coumarate--CoA ligase-like 7 [Nicotiana sylvestris]728001294 (4)ref|XP_009603383.1|2e-108PREDICTED: 4-coumarate--CoA ligase-like 7 [Nicotiana tomentosiformis]
JMSF001K20Sequence294007284 (4)ref|XP_007016850.1|4e-26AMP-dependent synthetase and ligase family protein isoform 2, partial [Theobrom711001294 (4)ref|XP_009603383.1|3e-111PREDICTED: 4-coumarate--CoA ligase-like 7 [Nicotiana tomentosiformis]
JMSF009E02Sequence425007284 (4)ref|XP_009603383.1|2e-47PREDICTED: 4-coumarate--CoA ligase-like 7 [Nicotiana tomentosiformis]752001294 (4)ref|XP_009603383.1|2e-112PREDICTED: 4-coumarate--CoA ligase-like 7 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMFF004E14+                                                      TGATGNAAGAGTGTGC
                      ____________________________________________________________
consensus                                                         TGATGNAAGAGTGTGC
 
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rJMFF004E14+          CAAGAATTTCCNTCAGGCTACTGTAATTCAGGGATATGGCATGACAGAAACTTGTGGAGT
                      ____________________________________________________________
consensus             CAAGAATTTCCNTCAGGCTACTGTAATTCAGGGATATGGCATGACAGAAACTTGTGGAGT
 
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rJMFF004E14+          TGTGTGTATAGAGAATACAAGAATTGGTCCAAGACACTCCGGGTCAGCTGGATTGCTGGT
rJMFF035B02+                                                           GGATTGCTGGT
rJMSF001K20+                                               TCCGGGTCAGCTGGATTGCTGGT
rJMSF009E02+                                      CCAAGACACTCCGGGTCAGCTGGATTGCTGGT
                      ____________________________________________________________
consensus             TGTGTGTATAGAGAATACAAGAATTGGTCCAAGACACTCCGGGTCAGCTGGATTGCTGGT
 
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rJMFF004E14+          TTCAGCAGTGGAGGCGCAAATCGTTAGTGTTGATAAACTGCAGCATCTTCCTCCTGGTCA
rJMFF035B02+          TTCAGCAGTGGAGGCGCAAATCGTTAGTGTTGATAAACTGCAGCATCTTCCTCCTGGTCA
rJMSF001K20+          TTCAGCAGTGGAGGCGCAAATCGTTAGTGTTGATAAACTGCAGCATCTTCCTCCTGGTCA
rJMSF009E02+          TTCAGCAGTGGAGGCGCAAATCGTTAGTGTTGATAAACTGCAGCATCTTCCTCCTGGTCA
                      ____________________________________________________________
consensus             TTCAGCAGTGGAGGCGCAAATCGTTAGTGTTGATAAACTGCAGCATCTTCCTCCTGGTCA
 
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rJMFF004E14+          GTTGGGGGAGATTTGGGTACGAGGTCCTAACATGATGCAAGGTTATTACAAGAATCCACA
rJMFF035B02+          GTTGGGGGAGATTTGGGTACGAGGTCCTAACATGATGCAAGGTTATTACAAGAATCCACA
rJMSF001K20+          GTTGGGGGAGATTTGGGTACGAGGTCCTAACATGATGCAAGGTTATTACAAGAATCCACA
rJMSF009E02+          GTTGGGGGAGATTTGGGTACGAGGTCCTAACATGATGCAAGGTTATTACAAGAATCCACA
                      ____________________________________________________________
consensus             GTTGGGGGAGATTTGGGTACGAGGTCCTAACATGATGCAAGGTTATTACAAGAATCCACA
 
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rJMFF004E14+          GGCTACAAAGCTTACAATAGATAAGCAAGGCTGGGTCCATACTGGAGATCTTGGATACTT
rJMFF035B02+          GGCTACAAAGCTTACAATAGATAAGCAAGGCTGGGTCCATACTGGAGATCTTGGATACTT
rJMSF001K20+          GGCTACAAAGCTTACAATAGATAAGCAAGGCTGGGTCCATACTGGAGATCTTGGATACTT
rJMSF009E02+          GGCTACAAAGCTTACAATAGATAAGCAAGGCTGGGTCCATACTGGAGATCTTGGATACTT
                      ____________________________________________________________
consensus             GGCTACAAAGCTTACAATAGATAAGCAAGGCTGGGTCCATACTGGAGATCTTGGATACTT
 
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rJMFF004E14+          TAACAAGGATGGAATGCTATATGTTGTTGACCGTATCAAGGAGCTGATTAAGTACAAAGG
rJMFF035B02+          TAACAAGGATGGAATGCTATATGTTGTTGACCGTATCAAGGAGCTGATTAAGTACAAAGG
rJMSF001K20+          TAACAAGGATGGAATGCTATATGTTGTTGACCGTATCAAGGAGCTGATTAAGTACAAAGG
rJMSF009E02+          TAACAAGGATGGAATGCTATATGTTGTTGACCGTATCAAGGAGCTGATTAAGTACAAAGG
                      ____________________________________________________________
consensus             TAACAAGGATGGAATGCTATATGTTGTTGACCGTATCAAGGAGCTGATTAAGTACAAAGG
 
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rJMFF004E14+          TTATCAGGTCGCACCAGCAGAGCTCGAAGGTCTGCTCGTTTCTCATCCAGAAATACAGGA
rJMFF035B02+          TTATCAGGTCGCACCAGCAGAGCTCGAAGGTCTGCTCGTTTCTCATCCAGAAATACAGGA
rJMSF001K20+          TTATCAGGTCGCACCAGCAGAGCTCGAAGGTCTGCTCGTTTCTCATCCAGAAATACAGGA
rJMSF009E02+          TTATCAGGTCGCACCAGCAGAGCTCGAAGGTCTGCTCGTTTCTCATCCAGAAATACAGGA
                      ____________________________________________________________
consensus             TTATCAGGTCGCACCAGCAGAGCTCGAAGGTCTGCTCGTTTCTCATCCAGAAATACAGGA
 
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rJMFF004E14+          TGCTGTTGTCATCCCATACCCGGATGCAGAAGCTGGTGAGGTCCCAGTTGCATATGTTGT
rJMFF035B02+          TGCTGTTGTCATCCCATACCCGGATGCAGAAGCTGGTGAGGTCCCAGTTGCATATGTTGT
rJMSF001K20+          TGCTGTTGTCATCCCATACCCGGATGCAGAAGCTGGTGAGGTCCCAGTTGCATATGTTGT
rJMSF009E02+          TGCTGTTGTCATCCCATACCCGGATGCAGAAGCTGGTGAGGTCCCAGTTGCATATGTTGT
                      ____________________________________________________________
consensus             TGCTGTTGTCATCCCATACCCGGATGCAGAAGCTGGTGAGGTCCCAGTTGCATATGTTGT
 
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rJMFF004E14+          TCGCTCCCCGAACAGCTCTCTGACTGAAGAAGATGTCAAGAAGTTCATTGCAGGCCAGGT
rJMFF035B02+          TCGCTCCCCGAACAGCTCTCTGACTGAAGAAGATGTCAAGAAGTTCATTGCAGGCCAGGT
rJMSF001K20+          TCGCTCCCCGAACAGCTCTCTGACTGAAGAAGATGTCAAGAAGTTCATTGCAGGCCAGGT
rJMSF009E02+          TCGCTCCCCGAACAGCTCTNTGACTGAAGAAGATGTCAAGAAGTTCATTGCAGGCCAGGT
                      ____________________________________________________________
consensus             TCGCTCCCCGAACAGCTCTCTGACTGAAGAAGATGTCAAGAAGTTCATTGCAGGCCAGGT
 
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rJMFF004E14+          TGCGCCATATAAGAGATTGCGCAAGGTGACGTTTATAAACAGCGTCCCAAAATCTGCCTC
rJMFF035B02+          TGCGCCATATAAGAGATTGCGCAAGGTGACGTTTATAAACAGCGTCCCAAAATCTGCCTC
rJMSF001K20+          TGCGCCATATAAGAGATTGCGCAAGGTGACGTTTATAAACAGCGTCCCAAAATCTGCCTC
rJMSF009E02+          TGCGCCATATAAGAGATTGCGCAAGGTGACGTTTATAAACAGCGTCCCAAAATNTGCCTC
                      ____________________________________________________________
consensus             TGCGCCATATAAGAGATTGCGCAAGGTGACGTTTATAAACAGCGTCCCAAAATCTGCCTC
 
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rJMFF004E14+          GGGGAAGATTCTTAGACGGGAACTGATCGAAAAGGTACGAGCAAAACTCTAATGGTATAG
rJMFF035B02+          GGGGAAGATTCTTAGACGGGAACTGATCGAAAAGGTACGAGCAAAACTCTAATGGTATAG
rJMSF001K20+          GGGGAAGATTCTTAGACGGGAACTGATCGAAAAGGTACGAGCAAAACTCTAATGGTATAG
rJMSF009E02+          GGGGAAGATTCTTAGACGGGAACTGATCGAAAAGGTACGAGCAAAACTCTAATGGTATAG
                      ____________________________________________________________
consensus             GGGGAAGATTCTTAGACGGGAACTGATCGAAAAGGTACGAGCAAAACTCTAATGGTATAG
 
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rJMFF004E14+          TGGTTTGTTATTCTGGAGAATAACTGAATACATCTGTTGCTAGAGAACCTATTCATAGTA
rJMFF035B02+          TGGTTTGTTATTCTGGAGAATAACTGAATACATCTGTTGCTAGAGAACCTATTCATAGTA
rJMSF001K20+          TGGTTTGTTATTCTGGAGAATAACTGAATACATCTGTTGCTAGAGAACCTATTCATAGTA
rJMSF009E02+          TGGTTTGTTATTCTGGAGAATAACTGAATACATCTGTTGCTAGAGAACCTATTCATAGTA
                      ____________________________________________________________
consensus             TGGTTTGTTATTCTGGAGAATAACTGAATACATCTGTTGCTAGAGAACCTATTCATAGTA
 
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rJMFF004E14+          TATTATCAGGCAATAAACTTGTACTCATGTTGTAAACTTGGAGGATAAGTGGCTTCAAGT
rJMFF035B02+          TATTATCAGGCAATAAACTTGTACTCATGTTGTAAACTTGGAGGATAAGTGGCTTCAAGT
rJMSF001K20+          TATTATCAGGCAATAAACTTGTACTCATGTTGTAAACTTGGAGGATAAGTGGCTTCAAGT
rJMSF009E02+          TATTATCAGGCAATAAACTTGTACTCATGTTGTAAACTTGGAGGATAAGTGGCTTCAAGT
                      ____________________________________________________________
consensus             TATTATCAGGCAATAAACTTGTACTCATGTTGTAAACTTGGAGGATAAGTGGCTTCAAGT
 
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rJMFF004E14+          GAACATAAA                                                   
rJMFF035B02+          GAACATAAATTCCAACTATTTGTAGCTGCTT-CATGGCATATACACACACACAAGAAG  
rJMSF001K20+          GAACATAAATTCCAACTATT                                        
rJMSF009E02+          GAACATAAATTCCAACTATTTGTAGCTGCTTNCATGGCATATACACACACACAAGAAGTT
                      ____________________________________________________________
consensus             GAACATAAATTCCAACTATTTGTAGCTGCTTNCATGGCATATACACACACACAAGAAGTT