Contig 001293:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN039E05Sequence634001293 (3)ref|XP_011074832.1|2e-25PREDICTED: SWI/SNF complex subunit SWI3C [Sesamum indicum]
JMSF009C04Sequence337009220 (3)826001293 (3)ref|XP_011074832.1|1e-41PREDICTED: SWI/SNF complex subunit SWI3C [Sesamum indicum]
JMSF036F12Sequence541009220 (3)ref|XP_009803801.1|1e-28PREDICTED: SWI/SNF complex subunit SWI3C [Nicotiana sylvestris]746001293 (3)ref|XP_011074832.1|2e-38PREDICTED: SWI/SNF complex subunit SWI3C [Sesamum indicum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009C04+                        AGCTGAAGCAGNTTGCTGAAGNTGAGACATTATTGATGAGGGGAAT
                      ____________________________________________________________
consensus                           AGCTGAAGCAGNTTGCTGAAGNTGAGACATTATTGATGAGGGGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036F12+                AGATGGAAAGGAGAAGGCAGAGAATTGCCGGGGAACGCAATATGATGACCTCAC
rJMSF009C04+          GTGAACAGATGGAAAGGAGAAGGCAGAGAATTGCCGGGGAACGCAATATGATGACCTCAC
                      ____________________________________________________________
consensus             GTGAACAGATGGAAAGGAGAAGGCAGAGAATTGCCGGGGAACGCAATATGATGACCTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036F12+          AATTCGGATCACCTACAGTACCCCGATCCATTGGTCTATCAGGCGTTGGGACATCGATGA
rJMSF009C04+          AATTCGGATCACCTACAGTACCCCGATCCATTGGTCTATCAGGCGTTGGGACATCGATGA
                      ____________________________________________________________
consensus             AATTCGGATCACCTACAGTACCCCGATCCATTGGTCTATCAGGCGTTGGGACATCGATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036F12+          TCAATAATACCAGCGTAAATAGTCGGCCACCTGTTGTTTCAGGTTCTCAACAACCTTTCA
JMFN039E05-            CAATAATACCAGCGTAAATAGTCGGCCACCTGTTGTTTCAGGTTCTCAACAACCTTTCA
rJMSF009C04+          TCAATAATACCAGCGTAAATAGTCGGCCACCTGTTGTTTCAGGTTCTCAACAACCTTTCA
                      ____________________________________________________________
consensus             TCAATAATACCAGCGTAAATAGTCGGCCACCTGTTGTTTCAGGTTCTCAACAACCTTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036F12+          TCTCTGGGTATGGCAATAACCAACCGCTCCATCCCCACATGCAGTTTATGCCACAGCAAG
JMFN039E05-           TCTCTGGGTATGGCAATAACCAACCGCTCCATCCCCACATGCAGTTTATGCCACAGCAAG
rJMSF009C04+          TCTCTGGGTATGGCAATAACCAACCGCTCCATCCCCACATGCAGTTTATGCCACAGCAAG
                      ____________________________________________________________
consensus             TCTCTGGGTATGGCAATAACCAACCGCTCCATCCCCACATGCAGTTTATGCCACAGCAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036F12+          GAATGTATGGACTTGGGCCACGGTTACCACTTTCAGCTATACACCCATCCTCTGCTAGTG
JMFN039E05-           GAATGTATGGACTTGGGCCACGGTTACCACTTTCAGCTATACACCCATCCTCTGCTAGTG
rJMSF009C04+          GAATGTATGGACTTGGGCCACGGTTACCACTTTCAGCTATACACCCATCCTCTGCTAGTG
                      ____________________________________________________________
consensus             GAATGTATGGACTTGGGCCACGGTTACCACTTTCAGCTATACACCCATCCTCTGCTAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036F12+          CCAATGCTATGTTTAACGCTGCGGCAAATTCCCAACCATCTCTCGGTCATCCTATGCTCA
JMFN039E05-           CCAATGCTATGTTTAACGCTGCGGCAAATTCCCAACCATCTCTCGGTCATCCTATGCTCA
rJMSF009C04+          CCAATGCTATGTTTAACGCTGCGGCAAATTCCCAACCATCTCTCGGTCATCCTATGCTCA
                      ____________________________________________________________
consensus             CCAATGCTATGTTTAACGCTGCGGCAAATTCCCAACCATCTCTCGGTCATCCTATGCTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036F12+          GACCCGCATCTGGGACTAAACCTGGTTTAGGCTAAATATAAGCAAGTGGCTCCACATTGG
JMFN039E05-           GACCCGCATCTGGGACTAAACCTGGTTTAGGCTAAATATAAGCAAGTGGCTCCACATTGG
rJMSF009C04+          GACCCGCATCTGGGACTAAACCTGGTTTAGGCTAAATATAAGCAAGTGGCTCCACATTGG
                      ____________________________________________________________
consensus             GACCCGCATCTGGGACTAAACCTGGTTTAGGCTAAATATAAGCAAGTGGCTCCACATTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036F12+          CATTGCTTGGGTTGGTAACAATTGTTGTATTGCTTTCTGTAGTAACTTGGCTGATGAAAA
JMFN039E05-           CATTGCTTGGGTTGGTAACAATTGTTGTATTGCTTTCTGTAGTAACTTGGCTGATGAAAA
rJMSF009C04+          CATTGCTTGGGTTGGTAACAATTGTTGTATTGCTTTCTGTAGTAACTTGGCTGATGAAAA
                      ____________________________________________________________
consensus             CATTGCTTGGGTTGGTAACAATTGTTGTATTGCTTTCTGTAGTAACTTGGCTGATGAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036F12+          TGAATGATACTGTGCACCGCATATTCTGGATCGTTTGGCACTGCTGGATGATTGGCGCTC
JMFN039E05-           TGAATGATACTGTGCACCGCATATTCTGGATCGTTTGGCACTGCTGGATGATTGGCGCTC
rJMSF009C04+          TGAATGATACTGTGCACCGCATATTCTGGATCGTTTGGCACTGCTGGATGATTGGCGCTC
                      ____________________________________________________________
consensus             TGAATGATACTGTGCACCGCATATTCTGGATCGTTTGGCACTGCTGGATGATTGGCGCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036F12+          AGTTTGACATCACGCTAACCTAATACATTACATTGAGCAGCTTTATGTAGTGGTGTAGTA
JMFN039E05-           AGTTTGACATCACGCTAACCTAATACATTACATTGAGCAGCTTTATGTAGTGGTGTAGTA
rJMSF009C04+          AGTTTGACATCACGCTAACCTAATACATTACATTGAGCAGCTTTATGTAGTGGTGTAGTA
                      ____________________________________________________________
consensus             AGTTTGACATCACGCTAACCTAATACATTACATTGAGCAGCTTTATGTAGTGGTGTAGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036F12+          GTTGCAAGCCAAGGTTCTCTTGTAATTTAGCACTCTTCCAATGAGGGCAATCTGCAATTA
JMFN039E05-           GTTGCAAGCCAAGGTTCTCTTGTAATTTAGCACTCTTCCAATGAGGGCAATCTGCAATTA
rJMSF009C04+          GTTGCAAGCCAAGGTTCTCTTGTAATTTAGCACTCTTCCAATGAGGGCAATCTGCAATTA
                      ____________________________________________________________
consensus             GTTGCAAGCCAAGGTTCTCTTGTAATTTAGCACTCTTCCAATGAGGGCAATCTGCAATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036F12+          GGAAGCTAGAATTGCTGTTCTAATTTTGTACAGGTAATTTGTACTCAGGGAGATAGAGGA
JMFN039E05-           GGAAGCTAGAATTGCTGTTCTAATTTTGTACAGGTAATTTGTACTCAGGGAGATAGAGGA
rJMSF009C04+          GGAAGCTAGAATTGCTGTTCTAATTTTGTACAGGTAATTTGTACTCAGGGAGATAGAGGA
                      ____________________________________________________________
consensus             GGAAGCTAGAATTGCTGTTCTAATTTTGTACAGGTAATTTGTACTCAGGGAGATAGAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036F12+          AGTGAAAGCTACAAAAAAAATGTTAGTTT                               
JMFN039E05-           AGTGAAAGCTACAAAAAAAATGTTAGTTT                               
rJMSF009C04+          AGTGAAAGCTACAAAAAAAATGTTAGTTTTCCTTATACATTATGTGGCAGCAGAGAAAAT
                      ____________________________________________________________
consensus             AGTGAAAGCTACAAAAAAAATGTTAGTTTTCCTTATACATTATGTGGCAGCAGAGAAAAT