| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF020K22 | Sequence | 557 | 012875 (3) | ref|XP_009783320.1| | 1e-37 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 | 758 | 001291 (3) | ref|XP_009783324.1| | 2e-106 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 |
| JMSF008L10 | Sequence | 475 | 012875 (3) | ref|XP_009783320.1| | 5e-41 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 | 684 | 001291 (3) | ref|XP_006359984.1| | 9e-70 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 |
| JMSF031N07 | Sequence | 689 | 012875 (3) | ref|XP_009783320.1| | 8e-71 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 | 608 | 001291 (3) | ref|XP_011466400.1| | 2e-48 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 |
This contig is upended
. : . : . : . : . : . :
rJMFF020K22+ GAGCAAGATTACTCATAGCGCTAGGTGCAGCTAAG
____________________________________________________________
consensus GAGCAAGATTACTCATAGCGCTAGGTGCAGCTAAG
. : . : . : . : . : . :
rJMFF020K22+ GGTATCNTATACCTGCACACTGAAGCTCACCCGCCAATATTCCACAGAGATATCAAAGCC
____________________________________________________________
consensus GGTATCNTATACCTGCACACTGAAGCTCACCCGCCAATATTCCACAGAGATATCAAAGCC
. : . : . : . : . : . :
rJMFF020K22+ AGCAATATTCTCCTAGACTCTAAACTCACAGCTAAAGTTGCAGATTTTGGATTGTCGCGG
rJMSF008L10+ AGTTGCAGATTTTGGATTGTCGCGG
____________________________________________________________
consensus AGCAATATTCTCCTAGACTCTAAACTCACAGCTAAAGTTGCAGATTTTGGATTGTCGCGG
. : . : . : . : . : . :
rJMFF020K22+ CTCGCCCCTGTCCTGAATGATGAAGGGATGTTACCCGATCACGTATCAACCATTGTCAAG
rJMSF031N07+ TTGTCAAG
rJMSF008L10+ CTCGCCCCTGTCCTGAATGATGAAGGGATGTTACCCGATCACGTATCAACCATTGTCAAG
____________________________________________________________
consensus CTCGCCCCTGTCCTGAATGATGAAGGGATGTTACCCGATCACGTATCAACCATTGTCAAG
. : . : . : . : . : . :
rJMFF020K22+ GGAACACCGGGTTACCTTGATCCCGAGTATTTCCTGACGCGCAAATTGACAGACAAAAGC
rJMSF031N07+ GGAACNCCGGGTTACCTTGATCCCGAGTATTTCCTGACGCGCAAATTGACAGACAAAAGC
rJMSF008L10+ GGAACNCCGGGTTACCTTGATCCCGAGTATTTCCTGACGCGCAAATTGACAGACAAAAGC
____________________________________________________________
consensus GGAACACCGGGTTACCTTGATCCCGAGTATTTCCTGACGCGCAAATTGACAGACAAAAGC
. : . : . : . : . : . :
rJMFF020K22+ GATGTTTACAGCCTCGGGGTTGTGTTCTTGGAGATCTTGACAGGCATGCGTCCGATATCG
rJMSF031N07+ GATGTTTACAGCCTCGGGGTTGTGTTNTTGGAGATCTTGACAGGCANGCGTNCGATATCG
rJMSF008L10+ GATGTTTACAGCCTNGGGGTTGTGTTCTTGGAGATCTTGACAGGCNTGCGTCCGATATCG
____________________________________________________________
consensus GATGTTTACAGCCTCGGGGTTGTGTTCTTGGAGATCTTGACAGGCATGCGTCCGATATCG
. : . : . : . : . : . :
rJMFF020K22+ CATGGAAAAAATATTGTTCGCGAGGTGAACTTGGTTCATGAATCTGGCACACTGTTCTCC
rJMSF031N07+ CANGGAAAAAATATTGTTCGCGAGGTGAACNTGGTTCATGAATNTGGCNCNCTGTTNTCC
rJMSF008L10+ CATGGAAAAAATATTGTTCGCGAGGTGAACTTGGTTCATGAATNTGGCNCNCTGTTNTCC
____________________________________________________________
consensus CATGGAAAAAATATTGTTCGCGAGGTGAACTTGGTTCATGAATCTGGCACACTGTTCTCC
. : . : . : . : . : . :
rJMFF020K22+ ATTGTGGACAGCAGAATGGGTTCTTTCCCCTCAGAATGTGCAGAAAGATTCGTGGCATTG
rJMSF031N07+ NTTGTGGACAGCNGAATGGGTTNTTTCCCCTCAGAATGTGCNGAAAGATTNGTGGCNTTG
rJMSF008L10+ NTTGTGGACAGCNGAATGGGTTNTTTCCCCTCAGAATGTGCAGAAAGATTCGTGGCNTTG
____________________________________________________________
consensus ATTGTGGACAGCAGAATGGGTTCTTTCCCCTCAGAATGTGCAGAAAGATTCGTGGCATTG
. : . : . : . : . : . :
rJMFF020K22+ GCGCTGCGGTGTTGCAGTGAGAAGCAGGACGAGAGGCCGTCGATGCATGATGTTGTGAGG
rJMSF031N07+ GCGCTGCGGTGTTGCNGTGAGAAGCNGGACGAGAGGCCGTCGATGCNTGATGTTGTGAGG
rJMSF008L10+ GCGCTGCGGTGTTGCAGTGAGAAGCNGGACGAGAGGCCGTCGATGCNTGATGTTGTGAGG
____________________________________________________________
consensus GCGCTGCGGTGTTGCAGTGAGAAGCAGGACGAGAGGCCGTCGATGCATGATGTTGTGAGG
. : . : . : . : . : . :
rJMFF020K22+ GAGCTGGAGACCATACTGGGCATGATGCCAGAAGAAGAAGTTGACACACCAAAATCAAAC
rJMSF031N07+ GAGCTGGAGNCCNTACTGGGCNTGATGCCNGAAGAAGAAGTTGACNCNCCAAAATCNAAC
rJMSF008L10+ GAGCTGGAGACCNTACTGGGCNTGATGCCNGAAGAAGAAGTTGACNCNCCAAAATCAAAC
____________________________________________________________
consensus GAGCTGGAGACCATACTGGGCATGATGCCAGAAGAAGAAGTTGACACACCAAAATCAAAC
. : . : . : . : . : . :
rJMFF020K22+ TTCAAGTTTGATGGAATAATGGCATCATCGTTTTCTAATACTGGTAAAGTTCAAACGGGA
rJMSF031N07+ TTCAAGTTTGATGGAATAATGGCATCATCGTTTTNTAATACTGGTAAAGTTCAAACGGGA
rJMSF008L10+ TTCAAGTTTGATGGAATAATGGCATCATCGTTTTNTAATACTGGTAAAGTTCAAACGGGA
____________________________________________________________
consensus TTCAAGTTTGATGGAATAATGGCATCATCGTTTTCTAATACTGGTAAAGTTCAAACGGGA
. : . : . : . : . : . :
rJMFF020K22+ TCATCATCCAACGTTTTCGGGAGCGATCTTGTCAGTGGTACTACATTATCCATCACGCCT
rJMSF031N07+ TCATCATCCAACGTTTTCGGGAGCGATCTTGTCNGTGGTACTACNTTATCCNTCACGCCT
rJMSF008L10+ TCATCNTCCAACGTTTTCGGGAGCGATCTTGTCAGTGGTACTACNTTATCCNTCNCGCCT
____________________________________________________________
consensus TCATCATCCAACGTTTTCGGGAGCGATCTTGTCAGTGGTACTACATTATCCATCACGCCT
. : . : . : . : . : . :
rJMFF020K22+ CGCTAACTAACTTCACTGAACTTAAACCTTGTACATCAAAATATAGGTAGAAAATTAGGA
rJMSF031N07+ CGCTAACTAACTTCNCTGAACTTAAACCTTGTACNTCAAAATATAGGTAGAAAATTAGGA
rJMSF008L10+ CGCTAACTAACTTCNCTGAACTTAAACCTTGTACNTCAAAATATAGGTAGAAAATTAGGA
____________________________________________________________
consensus CGCTAACTAACTTCACTGAACTTAAACCTTGTACATCAAAATATAGGTAGAAAATTAGGA
. : . : . : . : . : . :
rJMFF020K22+ TAA
rJMSF031N07+ TAATGTCNCAAACTGCTGCAATAGAGTGTGTTCTGTTCCCCTTTTTTTTTTGCAAACTAG
rJMSF008L10+ TAATGTCNC-AACTGCTGCAATAGAGTGTGTTCTGTTCCCCTTTTTTTTTTGCAAACTAG
____________________________________________________________
consensus TAATGTCNCAAACTGCTGCAATAGAGTGTGTTCTGTTCCCCTTTTTTTTTTGCAAACTAG