Contig 001286:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008D05+                 TCCGAAACTTGTTAAGCTCTTTCTTTTCGGTTTGCAGATAGCCACTAACACCC
                      ____________________________________________________________
consensus                    TCCGAAACTTGTTAAGCTCTTTCTTTTCGGTTTGCAGATAGCCACTAACACCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008D05+          TTGAGAGGGTTGCACCGCTCACCCATGCAGTTGGGAATGTGTTGAAACGTGTTTTTGTCA
                      ____________________________________________________________
consensus             TTGAGAGGGTTGCACCGCTCACCCATGCAGTTGGGAATGTGTTGAAACGTGTTTTTGTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008D05+          TTGGATTCTCAATCATTGTCTTTGGTAAATACAAATCCTCGTAAACTTTCTCATGCTAAA
                      ____________________________________________________________
consensus             TTGGATTCTCAATCATTGTCTTTGGTAAATACAAATCCTCGTAAACTTTCTCATGCTAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008D05+          TCTTTCCAATACTTGTGTTCAAATGACACAACAATCTAACGTTTTTATCTTTTGCAGGCA
                      ____________________________________________________________
consensus             TCTTTCCAATACTTGTGTTCAAATGACACAACAATCTAACGTTTTTATCTTTTGCAGGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008D05+          ACAAGATTTCGACTCAAACTGCTATTGGAACCAGTATAGCAATCGCTGGAGTTGCACTCT
                      ____________________________________________________________
consensus             ACAAGATTTCGACTCAAACTGCTATTGGAACCAGTATAGCAATCGCTGGAGTTGCACTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008D05+          ACTCCTTCATTAAGGCCAAGATAGAGGAAGAGAAACGGGTGAGACCAACAACCTCAATCT
                      ____________________________________________________________
consensus             ACTCCTTCATTAAGGCCAAGATAGAGGAAGAGAAACGGGTGAGACCAACAACCTCAATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008D05+          GAACTTTCTGTTGAACATTAAACCAACCAACCTTATATTTTGGTCTTAGTAATGGTACTG
                      ____________________________________________________________
consensus             GAACTTTCTGTTGAACATTAAACCAACCAACCTTATATTTTGGTCTTAGTAATGGTACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008D05+          TCTGCATCTTTGTTGTCTAACATGAAAACATTGTTTTCTTTTCTTGGAACATCTGCAGCA
                      ____________________________________________________________
consensus             TCTGCATCTTTGTTGTCTAACATGAAAACATTGTTTTCTTTTCTTGGAACATCTGCAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036H24+                                     AGGAGAGCANGGATGGATGTGGAGNACAATTGC
rJMSF008D05+          AATGAAATCTACCTGAGGAGATCATAAAGGAGAGCATGGATGGATGTGGAGGACAATTGC
                      ____________________________________________________________
consensus             AATGAAATCTACCTGAGGAGATCATAAAGGAGAGCATGGATGGATGTGGAGGACAATTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036H24+          CTGGCTGGNTGATTTGTATTTTTTTCNTCCAATGAAAATGAAAANGAGGAAGAAAAANCC
rJMSF008D05+          CTGGCTGGTTGATTTGTATTTTTTTCATCCAATGAAAATGAAAAAGAGGAAGAAAAAACC
                      ____________________________________________________________
consensus             CTGGCTGGTTGATTTGTATTTTTTTCATCCAATGAAAATGAAAAAGAGGAAGAAAAAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036H24+          CAAATNNGAGTTATTCTGTATAATTGTGTANTTACGTTTTCCACGTTGATTATTTTGATT
rJMSF008D05+          CAAATTTGAGTTATTCTGTATAATTGTGTAGTTAGTTTT--CCAGTTGATTATTTTGATT
                      ____________________________________________________________
consensus             CAAATTTGAGTTATTCTGTATAATTGTGTAGTTAGTTTTTCCCCGTTGATTATTTTGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036H24+          CGGAGATCANTGATCCTCAACCACTCNCCATGGTTGGAATAATGT               
rJMSF008D05+          CGGAGATCACTGATCCTCAACCACTCTCAATGGTTGGAATAATGTGTACTTGCACTACTT
                      ____________________________________________________________
consensus             CGGAGATCACTGATCCTCAACCACTCTCCATGGTTGGAATAATGTGTACTTGCACTACTT