Contig 001282:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN017C14Sequence567001282 (5)ref|XP_006360633.1|143PREDICTED: uncharacterized protein LOC102579045 [Solanum tuberosum]
JMFN028O10Sequence591001282 (5)ref|XP_006360633.1|141PREDICTED: uncharacterized protein LOC102579045 [Solanum tuberosum]
JMFN034C13Sequence626001282 (5)ref|XP_006360633.1|145PREDICTED: uncharacterized protein LOC102579045 [Solanum tuberosum]
JMSF007I15Sequence330001282 (5)ref|XP_006360633.1|139PREDICTED: uncharacterized protein LOC102579045 [Solanum tuberosum]642001282 (5)ref|XP_006360633.1|145PREDICTED: uncharacterized protein LOC102579045 [Solanum tuberosum]

Alignment

This contig is upended


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JMFN034C13+                  AAAACATCCCCAAACTTCAAATACTAACAACAAATGATAAAGTAGCTAGAGAA
JMFN028O10+                                                              GCTAGAGAA
rJMSF007I15-                            AAACTTCAAATACTAACAACAAATGATAAAGTAGCTAGAGAA
                      ____________________________________________________________
consensus                    AAAACATCCCCAAACTTCAAATACTAACAACAAATGATAAAGTAGCTAGAGAA
 
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JMFN034C13+           ACAACACATCTCTAAAAATTTATGAAATATTCAAGAGCAAAAAGTCCGGCAAAATTCACA
JMFN028O10+           ACAACACATCTCTAAAAATTTATGAAATATTCAAGAGCAAAAAGTCCGGCAAAATTCACA
JMFN017C14+                       TAAAAATTTATGAAATATTCAAGAGCAAAAAGTCCGGCAAAATTCACA
rJMSF007I15-          ACAACACATCTCTAAAAATTTATGAAATATTCAAGAGCAAAAAGTCCGGCAAAATTCACA
                      ____________________________________________________________
consensus             ACAACACATCTCTAAAAATTTATGAAATATTCAAGAGCAAAAAGTCCGGCAAAATTCACA
 
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JMFN034C13+           ATTTGCCGTATACGTAAGAATGCTCAAATCCACCAATTCACTTTTAGCAGTGAGGATATA
JMFN028O10+           ATTTGCCGTATACGTAAGAATGCTCAAATCCACCAATTCACTTTTAGCAGTGAGGATATA
JMFN017C14+           ATTTGCCGTATACGTAAGAATGCTCAAATCCACCAATTCACTTTTAGCAGTGAGGATATA
rJMSF007I15-          ATTTGCCGTATACGTAAGAATGCTCAAATCCACCAATTCACTTTTAGCAGTGAGGATATA
                      ____________________________________________________________
consensus             ATTTGCCGTATACGTAAGAATGCTCAAATCCACCAATTCACTTTTAGCAGTGAGGATATA
 
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JMFN034C13+           ACAAATTACAGATTTGATGATAGCAGTCTTCGCTTTACACCACTGTTCTGCATAATAAAA
JMFN028O10+           ACAAATTACAGATTTGATGATAGCAGTCTTCGCTTTACACCACTGTTCTGCATAATAAAA
JMFN017C14+           ACAAATTACAGATTTGATGATAGCAGTCTTCGCTTTACACCACTGTTCTGCATAATAAAA
rJMSF007I15-          ACAAATTACAGATTTGATGATAGCAGTCTTCGCTTTACACCACTGTTCTGCATAATAAAA
                      ____________________________________________________________
consensus             ACAAATTACAGATTTGATGATAGCAGTCTTCGCTTTACACCACTGTTCTGCATAATAAAA
 
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JMFN034C13+           ATTCAAGCCATTGAATAAACCGCAACAAAATGGAGATTGGCTCTCACCACGAATGCGGAT
JMFN028O10+           ATTCAAGCCATTGAATAAACCGCAACAAAATGGAGATTGGCTCTCACCACGAATGCGGAT
JMFN017C14+           ATTCAAGCCATTGAATAAACCGCAACAAAATGGAGATTGGCTCTCACCACGAATGCGGAT
rJMSF007I15-          ATTCAAGCCATTGAATAAACCGCAACAAAATGGAGATTGGCTCTCACCACGAATGCGGAT
                      ____________________________________________________________
consensus             ATTCAAGCCATTGAATAAACCGCAACAAAATGGAGATTGGCTCTCACCACGAATGCGGAT
 
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JMFN034C13+           AGATATCTCTTTTACTCCTCTTACAGACCCCTGACTTTCTTGACGAGGATGGATTTGAGC
JMFN028O10+           AGATATCTCTTTTACTCCTCTTACAGACCCCTGACTTTCTTGACGAGGATGGATTTGAGC
JMFN017C14+           AGATATCTCTTTTACTCCTCTTACAGACCCCTGACTTTCTTGACGAGGATGGATTTGAGC
JMSF007I15+                                         CTGACTTTCTTGACGAGGATGGATTTGAGC
rJMSF007I15-          AGATATCTCTTTTACTCCTCTTACAGACCCCTGACTTTCTTGACGAGGATGGATTTGAGC
                      ____________________________________________________________
consensus             AGATATCTCTTTTACTCCTCTTACAGACCCCTGACTTTCTTGACGAGGATGGATTTGAGC
 
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JMFN034C13+           TTGCGAGCGAGTTCTTGGGAGCGGATCTTACGCTGGAGGGCTTTCTTAGCGAGTACCCGC
JMFN028O10+           TTGCGAGCGAGTTCTTGGGAGCGGATCTTACGCTGGAGGGCTTTCTTAGCGAGTACCCGC
JMFN017C14+           TTGCGAGCGAGTTCTTGGGAGCGGATCTTACGCTGGAGGGCTTTCTTAGCGAGTACCCGC
JMSF007I15+           TTGCGAGCGAGTTCTTGGGAGCGGATCTTACGCTGGAGGGCTTTCTTAGCGAGTACCCGC
rJMSF007I15-          TTGCGAGCGAGTTCTTGGGAGCGGATCTTACGCTGGAGGGCTTTCTTAGCGAGTACCCGC
                      ____________________________________________________________
consensus             TTGCGAGCGAGTTCTTGGGAGCGGATCTTACGCTGGAGGGCTTTCTTAGCGAGTACCCGC
 
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JMFN034C13+           TTCTCGCAGTTCTTGATATGGCGAGGCTGCTGGCGCTTTATGATCCGTTCGATCCCGCTG
JMFN028O10+           TTCTCGCAGTTCTTGATATGGCGAGGCTGCTGGCGCTTTATGATCCGTTCGATCCCGCTG
JMFN017C14+           TTCTCGCAGTTCTTGATATGGCGAGGCTGCTGGCGCTTTATGATCCGTTCGATCCCGCTG
JMSF007I15+           TTCTCGCAGTTCTTGATATGGCGAGGCTGCTGGCGCTTTATGATCCGTTCGATCCCGCTG
rJMSF007I15-          TTCTCGCAGTTCTTGATATGGCGAGGCTGCTGGCGCTTTATGATCCGTTCGATCCCGCTG
                      ____________________________________________________________
consensus             TTCTCGCAGTTCTTGATATGGCGAGGCTGCTGGCGCTTTATGATCCGTTCGATCCCGCTG
 
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JMFN034C13+           GACTGCATCATCCTTTGCATCACCACCAATGCTCTCTCTAGATTGTTGTTGTAGACCTTC
JMFN028O10+           GACTGGATCATCCTTTGCATCACCACCAATGCTCTCTCTAGATTGTTGTTGTAGACCTTC
JMFN017C14+           GACTGCATCATCCTTTGCATCACCACCAATGCTCTCTCTAGATTGTTGTTGTAGACCTTC
JMSF007I15+           GACTGCATCATCCTTTGCATCACCACCAATGCTCTCTCTAGATTGTTGTTGTAGACCTTC
rJMSF007I15-          GACTGCATCATCCTTTGCATCACCACCAATGCTCTCTCTAGATTGTTGTTGTAGACCTTC
                      ____________________________________________________________
consensus             GACTGCATCATCCTTTGCATCACCACCAATGCTCTCTCTAGATTGTTGTTGTAGACCTTC
 
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JMFN034C13+           ACTCGGATTCCGCGGCATTGTTGGAGCTCCCAACTCACTGAGTTCAGGGAAGCACTGGGA
JMFN028O10+           ACTCGGATTCCGCGGCATTGTTGGAGCTCCCAACTCACTGAGTTCAGGGAAGCACTGGGA
JMFN017C14+           ACTCGGATTCCGCGGCATTGTTGGAGCTCCCAACTCACTGAGTTCAGGGAAGCACTGGGA
JMSF007I15+           ACTCGGATTCCGCGGCATTGTTGGAGCTCCCAACTCACTGAGTTCAGGGAAGCACTGGGA
rJMSF007I15-          ACTCGGATTCCGCGGCATTGTTGGAGCTCCCAACTCACTGAGTTCAGGGAAGCACTGGGA
                      ____________________________________________________________
consensus             ACTCGGATTCCGCGGCATTGTTGGAGCTCCCAACTCACTGAGTTCAGGGAAGCACTGGGA
 
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JMFN034C13+           CGAGTGAAGACGGCGGCCGAGACGCGGTTCCGC                           
JMFN028O10+           CGAGTGAAGACGGCGGCCGAGACGCGGTTCCGCAACCA                      
JMFN017C14+           CGAGTGAAGACGGCGGCCGAGACGCGGTTCCGCAACCA                      
JMSF007I15+           CGAGTGAAGACGGCGGCCGAGACGCGGTTCCGCAACCAGTTCATTCTCTACCCTTCTACC
rJMSF007I15-          CGAGTGAAGACGGCGGCCGAGACGCGGTTCCGCAACCAGTTCATTCTCTACCCTTCTACC
                      ____________________________________________________________
consensus             CGAGTGAAGACGGCGGCCGAGACGCGGTTCCGCAACCAGTTCATTCTCTACCCTTCTACC