| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF007B18 | Sequence | 298 | 001280 (6) | ref|XP_006359337.1| | 5e-19 | PREDICTED: protein IN2-1 homolog B-like isoform X1 [Solanum tuberosum] | 783 | 001280 (6) | ref|XP_009769896.1| | 2e-99 | PREDICTED: protein IN2-1 homolog B-like isoform X2 [Nicotiana sylvestris] |
| JMSF015N21 | Sequence | 485 | 001280 (6) | ref|XP_006359337.1| | 1e-61 | PREDICTED: protein IN2-1 homolog B-like isoform X1 [Solanum tuberosum] | 775 | 001280 (6) | ref|XP_009769896.1| | 2e-117 | PREDICTED: protein IN2-1 homolog B-like isoform X2 [Nicotiana sylvestris] |
| JMSF036A09 | Sequence | 676 | 001280 (6) | ref|XP_009769895.1| | 4e-78 | PREDICTED: protein IN2-1 homolog B-like isoform X1 [Nicotiana sylvestris] | 787 | 001280 (6) | ref|XP_009769895.1| | 1e-98 | PREDICTED: protein IN2-1 homolog B-like isoform X1 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMSF007B18- AAGAAAAGAGTGGAAGC
JMSF015N21- GGTTTCCAAATCGTTTGTTTCGTTGATGAAAGCAAAAGCAAGAAAAGAGTGGAAGC
JMSF036A09- C
____________________________________________________________
consensus GGTTTCCAAATCGTTTGTTTCGTTGATGAAAGCAAAAGCAAGAAAAGAGTGGAAGC
. : . : . : . : . : . :
JMSF007B18- TATCATCTCCATCGCAATAATGTCACTCTGCTTTCAACTTCCCTCCAAATTCCCACTCAA
JMSF015N21- TATCATCTCCATCGCAATAATGTCACTCTGCTTTCAACTTCCCTCCAAATTCCCACTCAA
JMSF036A09- TATCATCTCCATCGCAATAATGTCACTCTGCTTTCAACTTCCCTCCAAATTCCCACTCAA
____________________________________________________________
consensus TATCATCTCCATCGCAATAATGTCACTCTGCTTTCAACTTCCCTCCAAATTCCCACTCAA
. : . : . : . : . : . :
JMSF007B18- TATTCACCTCCGATGCTCCAAACCCACTCCAACATCACTCTCAGTCACGGCTTCAAGAAG
JMSF015N21- TATTCACCTCCGATGCTCCAAACCCACTCCAACATCACTCTCAGTCACGGCTTCAAGAAG
JMSF036A09- TATTCACCTCCGATGCTCCAAACCCACTCCAACATCACTCTCAGTCACGGCTTCAAGAAG
____________________________________________________________
consensus TATTCACCTCCGATGCTCCAAACCCACTCCAACATCACTCTCAGTCACGGCTTCAAGAAG
. : . : . : . : . : . :
JMSF007B18- TGAGGTGCTTCCTCCTGCTCTGGATTCATCCTCAGAACCACCGCCAATCTTTGATGGAAT
JMSF015N21- TGAGGTGCTTCCTCCTGCTCTGGATTCATCCTCAGAACCACCGCCAATCTTTGATGGAAT
JMSF036A09- TGAGGTGCTTCCTCCTGCTCTGGATTCATCCTCAGAACCACCGCCAATCTTTGATGGAAT
rJMSF036A09+ TCATCNTCAGAACCACCGCCCATCTTTGATGGAAT
rJMSF015N21+ GATGGAAT
____________________________________________________________
consensus TGAGGTGCTTCCTCCTGCTCTGGATTCATCCTCAGAACCACCGCCAATCTTTGATGGAAT
. : . : . : . : . : . :
JMSF007B18- TCCAAAGCTATACATTTC-TTACTCATGCCCATATGCACAACGTCCATGGATTGNCCGCA
JMSF015N21- TCCAAAGCTATACATTTC-TTACTCATGCCCATATGCACAACGTCCATGGATTGCCCGCA
JMSF036A09- TCCAAAGCTATACATTTC-TTACTCATGCCCATATGCACAACGTCCATGGATTGCCCGCA
rJMSF036A09+ TCCNAAGCTATACATTTCTTTACTCATGCCCATATGCACAACGTCCATGGATTGCCCGCA
rJMSF015N21+ TCCAAAGCTATACATTTC-TTACTCATGCCCATATGCACAACGTCCATGGATTGCCCGCA
____________________________________________________________
consensus TCCAAAGCTATACATTTC-TTACTCATGCCCATATGCACAACGTCCATGGATTGCCCGCA
. : . : . : . : . : . :
JMSF007B18- ACTG
JMSF015N21- ACTGTAAGGGATTACAGGACACGATAAAACTGGTCCCGATTGACTTAAAGAACAGGCCAG
JMSF036A09- ACT-----GGATTACAGGACACGATAAAACTGGTCCCGATTGACTTAAAGAACAGGCCAG
rJMSF036A09+ ACT-----GGATTACAGGACACGATAAAACTGGTCCCGATTGACTTAAAGAACAGGCCAG
rJMSF015N21+ ACTGTAAGGGATTACAGGACACGATAAAACTGGTCCCGATTGACTTAAAGAACAGGCCAG
rJMSF007B18+ GGATTACAGGACACGATAAAACTGGTCCCGATTGACTTAAAGAACAGGCCAG
____________________________________________________________
consensus ACTGTAAGGGATTACAGGACACGATAAAACTGGTCCCGATTGACTTAAAGAACAGGCCAG
. : . : . : . : . : . :
JMSF015N21- CTTGGTACAAGGAAAAGGTTTATCCGGCTAACAAGGTGCCGGCTCTGGAACACAATAATG
JMSF036A09- CTTGGTACAAGGAAAAGGTTTATCCGGCTAACAAGGTGCCGGCTCTGGAACACAATAATG
rJMSF036A09+ CTTGGTACAAGGAAAAGGTTTATCCGGCTAACAAGGTGCCGGCTCTGGAACACAATAATG
rJMSF015N21+ CTTGGTACAAGGAAAAGGTTTATCCGGCTAACAAGGTGCCGGCTCTGGAACACAATAATG
rJMSF007B18+ CTTGGTACAAGGAAAAGGTTTATCCGGCTAACAAGGTGCCGGCTCTGGAACACAATAATG
____________________________________________________________
consensus CTTGGTACAAGGAAAAGGTTTATCCGGCTAACAAGGTGCCGGCTCTGGAACACAATAATG
. : . : . : . : . : . :
JMSF015N21- AAGTTAAGGGAGAAAGTCTTGATTTAATTAAATATATCGACAGTAACTTTGAAGGGCCTT
JMSF036A09- AAGTTAAGGGAGAAAGTCTTGATTTAATTAAATATATCGACAGTAACTTTGAAGGGCCTT
rJMSF036A09+ AAGTTAAGGGAGAAAGTCTTGATTTAATTAAATATATCGACAGTAACTTTGAAGGGCCTT
rJMSF015N21+ AAGTTAAGGGAGAAAGTCTTGATTTAATTAAATATATCGACAGTAACTTTGAAGGGCCTT
rJMSF007B18+ AAGTTAAGGGAGAAAGTCTTGATTTAATTAAATATATCGACAGTAACTTTGAAGGGCCTT
____________________________________________________________
consensus AAGTTAAGGGAGAAAGTCTTGATTTAATTAAATATATCGACAGTAACTTTGAAGGGCCTT
. : . : . : . : . : . :
JMSF015N21- CTCTCTTTCC
JMSF036A09- CTCTCTTTCCGGATGATCCTTCCAAGAGAGAATTTTCCGAGGAATTGCTATCACACCTTG
rJMSF036A09+ CTCTCTTTCCGGATGATCCTTCCAAGAGAGAATTTTCCGAGGAATTGCTATCACACCTTG
rJMSF015N21+ CTCTCTTTCCGGATGATCCTTCCAAGAGAGAATTTTCCGAGGAATTGCTATCACACCTTG
rJMSF007B18+ CTCTCTTTCCGGATGATCCTTCCAAGAGAGAATTTTCCGAGGAATTGCTATCACACCTTG
____________________________________________________________
consensus CTCTCTTTCCGGATGATCCTTCCAAGAGAGAATTTTCCGAGGAATTGCTATCACACCTTG
. : . : . : . : . : . :
JMSF036A09- ACACATTTTACAAAACTGTAACTTCTTATTTCAAGGGAGAGAAGGAAGATGTCGGCGCTG
rJMSF036A09+ ACACATTTTACAAAACTGTAACTTCTTATTTCAAGGGAGAGAAGGAAGATGTCGGCGCTG
rJMSF015N21+ ACACATTTTACAAAACTGTAACTTCTTATTTCAAGGGAGAGAAGGAAGATGTCGGCGCTG
rJMSF007B18+ ACACATTTTACAAAACTGTAACTTCTTATTTCAAGGGAGAGAAGGAAGATGTCGGCGCTG
____________________________________________________________
consensus ACACATTTTACAAAACTGTAACTTCTTATTTCAAGGGAGAGAAGGAAGATGTCGGCGCTG
. : . : . : . : . : . :
JMSF036A09- CTTTCGACTCTATTGAGACCGCTCTTTCTAAACATGGAGATGGACCTTTTTTCCTTGGCC
rJMSF036A09+ CTTTCGACTCTATTGAGACCGCTCTTTCTAAACATGGAGATGGACCTTTTTTCCTTGGCC
rJMSF015N21+ CTTTCGACTCTATTGAGACCGCTCTTTCTAAATATGGAGATGGACCTTTTTTCCTTGGCC
rJMSF007B18+ CTTTCGACTCTATTGAGACCGCTCTTTCTAAATATGGAGATGGACCTTTTTTCCTTGGCC
____________________________________________________________
consensus CTTTCGACTCTATTGAGACCGCTCTTTCTAAACATGGAGATGGACCTTTTTTCCTTGGCC
. : . : . : . : . : . :
JMSF036A09- AGTTCAGTCTTGTAGATATAGCTTATGTGCCATTCGTTGAAAGATTCCAGCTTTTCTTAC
rJMSF036A09+ AGTTCAGTCTTGTAGATATAGCTTATGTGCCATTCGTTGAAAGATTCCAGCTTTTCTTAC
rJMSF015N21+ AGTTCAGTCTTGTAGATATAGCTTATGTGCCATTCGTTGAAAGATTCCAGCTTTTCTTAC
rJMSF007B18+ AGTTCAGTCTTGTAGATATAGCTTATGTGCCATTCGTTGAAAGATTCCAGCTTTTCTTAC
____________________________________________________________
consensus AGTTCAGTCTTGTAGATATAGCTTATGTGCCATTCGTTGAAAGATTCCAGCTTTTCTTAC
. : . : . : . : . : . :
JMSF036A09- TAGAAGTAAAGAGTTACGA
rJMSF036A09+ TAGAAGTAAAGAGTTACGATATTACAACAGGCAGGCCAAAACTTGCAGCCTGGATTGAGG
rJMSF015N21+ TAGAAGTAAAGAGTTACGATATTACAACAGGCAGGCCAAAACTTGCAGCCTGGATTGAGG
rJMSF007B18+ TAGAAGTAAAGAGTTACGATATTACAACAGGCAGGCCAAAACTTGCAGCCTGGATTGAGG
____________________________________________________________
consensus TAGAAGTAAAGAGTTACGATATTACAACAGGCAGGCCAAAACTTGCAGCCTGGATTGAGG
. : . : . : . : . : . :
rJMSF036A09+ AGATGAACCAAATTGAGGGGTACAAAGTAACAAAAAGAGATCCAAATGAGCTTGTGGAAG
rJMSF015N21+ AGATGAACCAAATTGAGGGCTACAAAGTAACAAAAAGAGATCCAAATGAGCTTGTGGAAG
rJMSF007B18+ AGATGAACCAAATTGAGGGGTACAAAGTAACAAAAAGAGATCCAAATGAGCTTGTGGAAG
____________________________________________________________
consensus AGATGAACCAAATTGAGGGGTACAAAGTAACAAAAAGAGATCCAAATGAGCTTGTGGAAG
. : . : . : . : . : . :
rJMSF036A09+ GCTATAAGAAGCGATATTCGTCTTAGCCCTGGCTGAAGATGAAGACGACGAGTAGCTCTT
rJMSF015N21+ GCTATAAGAAGCGATATTCGTCTTAGCCCTGGCTGAAGATGAAGACGACGAGTAGCTCTT
rJMSF007B18+ GCTATAAGAAGCGATATTCGTCTTAGCCCTGGCTGAAGATGAAGACGACGAGTAGCTCTT
____________________________________________________________
consensus GCTATAAGAAGCGATATTCGTCTTAGCCCTGGCTGAAGATGAAGACGACGAGTAGCTCTT
. : . : . : . : . : . :
rJMSF036A09+ ATTCTCATAACTCACGCTATAAGAGGATCACTGTAAGTACCAGTCCCCGGGGGGGAAAAG
rJMSF015N21+ ATTCTCATAACTCACGCTATAAGAGGATCACTGTAAGTA-CAGTCCCCGGGGGGGAAAAG
rJMSF007B18+ ATTCTCATAACTCACGCTATAAGAGGATCACTGTAAGTA-CAGTCCCCGGGGGGGAAAAG
____________________________________________________________
consensus ATTCTCATAACTCACGCTATAAGAGGATCACTGTAAGTA-CAGTCCCCGGGGGGGAAAAG
. : . : . : . : . : . :
rJMSF036A09+ AATGAGAACATTATGTATGGAGAGTTGTAGAAT
rJMSF015N21+ AATGAGAACATTATGTATGGAGAGTTGTAGAATTGAATTGAGTTTT
rJMSF007B18+ AATGAGAACATTATGTATGGAGAGTTGTAGAATTGAATTGAGTTTTTTGTTCCAACTCCG
____________________________________________________________
consensus AATGAGAACATTATGTATGGAGAGTTGTAGAATTGAATTGAGTTTTTTGTTCCAACTCCG
. : . : . : . : . : . :
rJMSF007B18+ ATCAATTTTTTATATTGGTAGCAGATGCAAATCTATACTGATTTTATATGATGTTTATAG
____________________________________________________________
consensus ATCAATTTTTTATATTGGTAGCAGATGCAAATCTATACTGATTTTATATGATGTTTATAG