| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF002A23 | Sequence | 290 | 005301 (3) | ref|XP_006356504.1| | 8e-26 | PREDICTED: probable peptide/nitrate transporter At1g22540-like [Solanum tuberos | 725 | 001279 (4) | ref|XP_006356504.1| | 1e-93 | PREDICTED: probable peptide/nitrate transporter At1g22540-like [Solanum tuberos |
| JMSF006M13 | Sequence | 372 | 003390 (5) | 263 | 001279 (4) | ref|XP_006387190.1| | 6e-10 | hypothetical protein POPTR_1576s00200g, partial [Populus trichocarpa] gb|ERP4610 | |||
| JMSF007O15 | Sequence | 510 | 001279 (4) | ref|XP_006387190.1| | 1e-68 | hypothetical protein POPTR_1576s00200g, partial [Populus trichocarpa] gb|ERP4610 | |||||
| JMSF049D16 | Sequence | 653 | 005301 (3) | ref|XP_006356504.1| | 8e-96 | PREDICTED: probable peptide/nitrate transporter At1g22540-like [Solanum tuberos | 734 | 001279 (4) | ref|XP_006356504.1| | 9e-93 | PREDICTED: probable peptide/nitrate transporter At1g22540-like [Solanum tuberos |
This contig is upended
. : . : . : . : . : . :
rJMSF002A23+ AAGCAAGGAGCTACAATGGATAGATCTATTGGTTC
rJMSF049D16+ AGCAAGGAGCTACAATGGATAGATCTATTGGTTC
____________________________________________________________
consensus AAGCAAGGAGCTACAATGGATAGATCTATTGGTTC
. : . : . : . : . : . :
rJMSF007O15+ GTCGC
rJMSF002A23+ AATTCTTGAAGTACCAGCTGCCTCATTACAATGTATCATCTGCTTTTCAATTCTNGTCGT
rJMSF049D16+ AATTCTTGAAGTACCAGCTGCCTCATTACAATGTATCATCTGCTTTTCAATTCTTGTCGT
____________________________________________________________
consensus AATTCTTGAAGTACCAGCTGCCTCATTACAATGTATCATCTGCTTTTCAATTCTTGTCGT
. : . : . : . : . : . :
rJMSF007O15+ TATGCCNATATACGATCGTATTTTGGTTCCTATTACTCGAGCAATAACCCGGAGACCCTC
rJMSF002A23+ TATGCCTATATACGACCGTATTTTGGTTCCTATTACTCGAGCAATAACCCGGAGACCCTC
rJMSF049D16+ TATGCCTATATACGACCGTATTTTGGTTCCTATTACTCGAGCAATAACCCGGAGACCCTC
____________________________________________________________
consensus TATGCCTATATACGACCGTATTTTGGTTCCTATTACTCGAGCAATAACCCGGAGACCCTC
. : . : . : . : . : . :
rJMSF007O15+ AGGGATAACAATGCTTCAAAGAATTGGAACGGGATTAGTTTTTTCTATACTGGCCATGGT
rJMSF002A23+ AGGGATAACAATGCTTCAAAGAATTGGAACGGGATTAGTTTTTTCTATACTGGCCATGGT
rJMSF049D16+ AGGGATAACAATGCTTCAAAGAATTGGAACGGGATTAGTTTTTTCTATACTGGCCATGGT
____________________________________________________________
consensus AGGGATAACAATGCTTCAAAGAATTGGAACGGGATTAGTTTTTTCTATACTGGCCATGGT
. : . : . : . : . : . :
rJMSF007O15+ GATTGCAGCTGTAGTTGAGAAGAAACGTCTTCAAACTGCTTTAGACTACGGGCTGGTTGA
rJMSF002A23+ GATTGCAGCTGTAGTTGAGAAGAAACGTCTTCAAACTGCTTTAGACTACGGGCTGGTTGA
rJMSF049D16+ GATTGCAGCTGTAGTTGAGAAGAAACGTCTTCAAACTGCTTTAGACTACGGGCTGGTTGA
____________________________________________________________
consensus GATTGCAGCTGTAGTTGAGAAGAAACGTCTTCAAACTGCTTTAGACTACGGGCTGGTTGA
. : . : . : . : . : . :
rJMSF007O15+ CTCGCCAGAGGTAACACTTCCCATTCACGTATTCTGGTTAATNCCACAGTATATATTGGT
rJMSF002A23+ CTCGCCAGAGGTAACACTTCCCATTCACGTATTCTGGTTAATACCACAGTATATATTGGT
rJMSF049D16+ CTCGCCAGAGGTAACACTTCCCATTCACGTATTCTGGTTAATACCACAGTATATATTGGT
____________________________________________________________
consensus CTCGCCAGAGGTAACACTTCCCATTCACGTATTCTGGTTAATACCACAGTATATATTGGT
. : . : . : . : . : . :
rJMSF007O15+ TGGCATTTNTGAAGCATTCAGCATGGTCGGTCTGCAAGAGTTCTTNTATGATCAAATGCC
rJMSF002A23+ TGGCATTTCTGAAGCATTCAGCATGGTCGGTCTGCAAGAGTTCTTCTATGATCAAATGCC
rJMSF049D16+ TGGCATTTCTGAAGCATTCAGCATGGTCGGTCTGCAAGAGTTCTTCTATGATCAAATGCC
____________________________________________________________
consensus TGGCATTTCTGAAGCATTCAGCATGGTCGGTCTGCAAGAGTTCTTCTATGATCAAATGCC
. : . : . : . : . : . :
rJMSF007O15+ TAGCGAGTTGAAAAGCGTAGGCCTTTCTTTGTACCTCAGTATCTTTGGCATTGGGAGCTT
rJMSF002A23+ TAGCGAGTTGAAAAGCGTAGGCCTTTCTTTGTACCTCAGTATCTTTGGCATTGGGAGCTT
rJMSF049D16+ TAGCGAGTTGAAAAGCGTAGGCCTTTCTTTGTACCTCAGTATCTTTGGCATTGGGAGCTT
____________________________________________________________
consensus TAGCGAGTTGAAAAGCGTAGGCCTTTCTTTGTACCTCAGTATCTTTGGCATTGGGAGCTT
. : . : . : . : . : . :
rJMSF007O15+ CTTAAGCAGCTTTCTGATTTCTATTATTGACCATGCCACTGGNGGAGATGGGCAAGACAG
rJMSF002A23+ CTTAAGCAGCTTTCTGATTTCTATTATTGACCATGCCACTGGTGGAGATGGGCAAGACAG
rJMSF049D16+ CTTAAGCAGCTTTCTGATTTCTATTATTGACCATGCCACTGGTGGAGATGGGCAAGACAG
rJMSF006M13+ GGAGATGGNCAAGACAG
____________________________________________________________
consensus CTTAAGCAGCTTTCTGATTTCTATTATTGACCATGCCACTGGTGGAGATGGGCAAGACAG
. : . : . : . : . : . :
rJMSF007O15+ TTGGTTCTCAGATAACTTGAACCGGGGGCATCTCGACTACTTCTATTGGCTTGTTGCAGG
rJMSF002A23+ TTGGTTCTCAGATAACTTGAACCGGGGGCATCTCGACTACTTCTATTGGCTTGTTGCAGG
rJMSF049D16+ TTGGTTCTCAGATAACTTGAACCGGGGGCATCTCGACTACTTCTATTGGCTTGTTGCAGG
rJMSF006M13+ TTGGTTNTCAGATNACTTGAACCGGGGGCATCTCGACTACTTCTATTGGCTTGTTGCAGG
____________________________________________________________
consensus TTGGTTCTCAGATAACTTGAACCGGGGGCATCTCGACTACTTCTATTGGCTTGTTGCAGG
. : . : . : . : . : . :
rJMSF007O15+ ACTTAGTATGGTAGCATTCGT
rJMSF002A23+ ACTTAGTATGGTAGCATTCGTTGCATACTTGTACTTCTCAAGATTGTACATCTACAATAA
rJMSF049D16+ ACTTAGTATGGTAGCATTCGTTGCATACTTGTACTTCTCAAGATTGTACATCTACAATAA
rJMSF006M13+ ACTTAGTATGGTAGCATTCGTCGCATACTTGTACTTCTCAAGATTGTACATCTACAATAA
____________________________________________________________
consensus ACTTAGTATGGTAGCATTCGTTGCATACTTGTACTTCTCAAGATTGTACATCTACAATAA
. : . : . : . : . : . :
rJMSF002A23+ GGCAAATGTTGCTTGAAATGCATTGGATTGATCATTTATGTTGATTAGGAATAAATATGT
rJMSF049D16+ GGCAAATGTTGCTTGAAATGCATTGGATTGATCATTTATGTTGATTAGGAATAAATATGT
rJMSF006M13+ GGCAAATGTTGCTTGAAATGCATNGGATTGATCATNNATGTTGNTTAGGAATAAATNTGT
____________________________________________________________
consensus GGCAAATGTTGCTTGAAATGCATTGGATTGATCATTTATGTTGATTAGGAATAAATATGT
. : . : . : . : . : . :
rJMSF002A23+ ATA
rJMSF049D16+ ATA
rJMSF006M13+ ATACTACAGTACTTTTTNTAAAAAAAACTAATGTATATTACAGTATACTNGGGAGNGTTA
____________________________________________________________
consensus ATACTACAGTACTTTTTNTAAAAAAAACTAATGTATATTACAGTATACTNGGGAGNGTTA