Contig 001276:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF007G07+                       TGGCCGTTTTGAGGAGATTACGTACCAGTTTGATGAGTCTGAACCAT
                      ____________________________________________________________
consensus                          TGGCCGTTTTGAGGAGATTACGTACCAGTTTGATGAGTCTGAACCAT
 
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rJMSF007G07+          GCATCACGGTAGGCGCCCCTAAAGGTTCATGTGAGTCTATCGCTGATATTTGGGCACAAC
                      ____________________________________________________________
consensus             GCATCACGGTAGGCGCCCCTAAAGGTTCATGTGAGTCTATCGCTGATATTTGGGCACAAC
 
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rJMSF007G07+          ACGATGGACCAAAGATTAGCTCAACCGGGTCTGGTGAGTGCCACTCGGGTGCACACGAGG
                      ____________________________________________________________
consensus             ACGATGGACCAAAGATTAGCTCAACCGGGTCTGGTGAGTGCCACTCGGGTGCACACGAGG
 
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rJMSF007G07+          AGCAACGTAACGAACCAACATTTGCCAGCGATGACAGAACAATAGATGTCGACGACGAGA
                      ____________________________________________________________
consensus             AGCAACGTAACGAACCAACATTTGCCAGCGATGACAGAACAATAGATGTCGACGACGAGA
 
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rJMSF007G07+          GTAAGTTCCCGGTGAGGGATTCACCCGGTGCAGATTCTTTAGGAGCGAGAACCATGCTCA
rJMSF030E04+                                                TTAGGAGCGAGAACCATGCTCA
                      ____________________________________________________________
consensus             GTAAGTTCCCGGTGAGGGATTCACCCGGTGCAGATTCTTTAGGAGCGAGAACCATGCTCA
 
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rJMSF007G07+          AGGATTACGAGAACGAAATCAGGCAAGAGTTGAGGTGGCTAAAGGCGAAGTACGAGATGC
rJMSF030E04+          AGGATTACGAGAACGAAATCAGGCAAGAGTTGAGGTGGCTAAAGGCGAAGTACGAGATGC
                      ____________________________________________________________
consensus             AGGATTACGAGAACGAAATCAGGCAAGAGTTGAGGTGGCTAAAGGCGAAGTACGAGATGC
 
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rJMSF007G07+          AACTGAGGGAGCTAAGGGATCATCAACTGGGCGTTGCGCCTAAATATCTTACCCTAAACC
rJMSF030E04+          AACTGAGGGAGCTAAGGGATCATCAACTGGGCGTTGCGCCTAAATATCTTACCCTAAACC
                      ____________________________________________________________
consensus             AACTGAGGGAGCTAAGGGATCATCAACTGGGCGTTGCGCCTAAATATCTTACCCTAAACC
 
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rJMSF007G07+          CCGATGACACCAATAAGAGTGAC-AATCGTCAGCGATTCCTACCCCAATGAACAAAGCCC
rJMSF030E04+          CCGATGACACCAATAAGAGTGACAAATCGTCAGCGATTCCTACCCCAATGAACAAAGCCC
                      ____________________________________________________________
consensus             CCGATGACACCAATAAGAGTGACAAATCGTCAGCGATTCCTACCCCAATGAACAAAGCCC
 
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rJMSF007G07+          GCGAGATTCCGCCAAAATCTTCTAGTTCAAGGAAACAACTCACCAAATATTCCTTACGAG
rJMSF030E04+          GCGAGATTCCGCCAAAATCTTCTAGTTCAAGGAAACAACTCACCAAATATTCCTTACGAG
                      ____________________________________________________________
consensus             GCGAGATTCCGCCAAAATCTTCTAGTTCAAGGAAACAACTCACCAAATATTCCTTACGAG
 
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rJMSF007G07+          AAGAGAAAAAATGCGATAACTCTGTCATAACATACGAGACGGCATACAGTTCATGTAGTC
rJMSF030E04+          AAGAGAAAAAATGCGATAACTCTGTCATAACATACGAGACGGCATACAGTTCATGTAGTC
                      ____________________________________________________________
consensus             AAGAGAAAAAATGCGATAACTCTGTCATAACATACGAGACGGCATACAGTTCATGTAGTC
 
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rJMSF007G07+          CAGTCCACATGGTCACCGCGAAGAGTTACTATACAGGGGCTTTGCTTCCTCAACCGCTTA
rJMSF030E04+          CAGTCCACATGGTCACCGCGAAGAGTTACTATACAGGGGCTTTGCTTCCTCAACCGCTTA
                      ____________________________________________________________
consensus             CAGTCCACATGGTCACCGCGAAGAGTTACTATACAGGGGCTTTGCTTCCTCAACCGCTTA
 
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rJMSF007G07+          ACAGGGCTACTTCTCTACCTGTTGATGCCATAGATTTCTAATCCCGAACCTCTATGGCAC
rJMSF006J20+                                 GATGCCATAGATTTNTNATCCCGAACCTTTATGGCAC
rJMSF030E04+          ACAGGGCTACTTCTCTACCTGTTGATGCCATAGATTTCTAATCCCGAACCTCTATGGCAC
                      ____________________________________________________________
consensus             ACAGGGCTACTTCTCTACCTGTTGATGCCATAGATTTCTAATCCCGAACCTCTATGGCAC
 
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rJMSF007G07+          GATAGATTTCCCCGGAGGGTGGCTTTGCAAATTGCAAG                      
rJMSF006J20+          GATAGATTTCCCCGGAGGGTGGCTTTGCAAATTGCAAG                      
rJMSF030E04+          GATAGATTTCCCCGGAGGGTGGCTTTGCAAATTGCAAGATTATATCTGAAATTTACGCAA
rJMSF006C16+                                               GATTATATTTGAAATTTACGCAA
                      ____________________________________________________________
consensus             GATAGATTTCCCCGGAGGGTGGCTTTGCAAATTGCAAGATTATATTTGAAATTTACGCAA
 
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rJMSF030E04+          ATCTCGATCTGCCTCACAAGCAATGGACTAAAGCTATTACCATATATGATGAGCTATTTA
rJMSF006C16+          ATCTCGATNTGCCTCACNAGCAATGGNCTAAAGNTATTACCATATATGATGAGNTATTTA
                      ____________________________________________________________
consensus             ATCTCGATCTGCCTCACAAGCAATGGACTAAAGCTATTACCATATATGATGAGCTATTTA
 
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rJMSF030E04+          GGAAAACATCATTGTGATTTTAGGCCTCACCAAATCCATAGACTTTTGGGCAGCAAATTT
rJMSF006C16+          GGAAAACATCATTGTGATTTTAGGCCTCNCCAAATCCATAGNCTTTTGGGCAGCAAATTT
                      ____________________________________________________________
consensus             GGAAAACATCATTGTGATTTTAGGCCTCACCAAATCCATAGACTTTTGGGCAGCAAATTT
 
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rJMSF030E04+          CACACTGCCTCTACTTTACAGCAAATGTTCATAGGCATGCCATCCCAGCAGCC--AAAAA
rJMSF006C16+          CACNCTGCCTNTACTTTACAGCAAATGTTCATAGGCNTGCCATCCCNGCNGCCAAAAAAA
                      ____________________________________________________________
consensus             CACACTGCCTCTACTTTACAGCAAATGTTCATAGGCATGCCATCCCAGCAGCCAAAAAAA
 
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rJMSF030E04+          AAAGAAAAAAGATGTTGGATGAGTTGGTGGTCCCAACTCCCACTTGCTCTCTTGT     
rJMSF006C16+          AAAGAAAAAAGATGTTGGATGAGTTGGTGGTCCCAACTCCCACTTGCTCTCTTGTACACT
                      ____________________________________________________________
consensus             AAAGAAAAAAGATGTTGGATGAGTTGGTGGTCCCAACTCCCACTTGCTCTCTTGTACACT