| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF004O24 | Sequence | 283 | 004944 (3) | ref|XP_009592259.1| | 3e-11 | PREDICTED: transcription factor IIIA-like isoform X2 [Nicotiana tomentosiformis | 417 | 001274 (3) | ref|XP_009804391.1| | 3e-23 | PREDICTED: transcription factor IIIA-like isoform X1 [Nicotiana sylvestris] |
| JMSF020L17 | Sequence | 383 | 004944 (3) | ref|XP_009592259.1| | 9e-26 | PREDICTED: transcription factor IIIA-like isoform X2 [Nicotiana tomentosiformis | 823 | 001274 (3) | ref|XP_009622482.1| | 2e-112 | PREDICTED: Krueppel-related zinc finger protein 1-like isoform X2 [Nicotiana to |
| JMSF024C04 | Sequence | 585 | 004944 (3) | ref|XP_009592258.1| | 1e-23 | PREDICTED: Krueppel-related zinc finger protein 1-like isoform X1 [Nicotiana to | 776 | 001274 (3) | ref|XP_009622481.1| | 2e-99 | PREDICTED: Krueppel-related zinc finger protein 1-like isoform X1 [Nicotiana to |
This contig is upended
. : . : . : . : . : . :
rJMSF020L17+ AAGAGATGCATG
____________________________________________________________
consensus AAGAGATGCATG
. : . : . : . : . : . :
rJMSF020L17+ ATCAGTGTGATTCCAGTCATATTGATAGTCCAAAGCNATATGTGTGCTCTGAAAGATGGG
____________________________________________________________
consensus ATCAGTGTGATTCCAGTCATATTGATAGTCCAAAGCNATATGTGTGCTCTGAAAGATGGG
. : . : . : . : . : . :
rJMSF020L17+ TGTGGAAAGGTTTTCAAGTATGCGTCCAAATTGAGGGCACATGAAGATTCACATGTTAAG
rJMSF024C04+ TTCACATGTTAAG
____________________________________________________________
consensus TGTGGAAAGGTTTTCAAGTATGCGTCCAAATTGAGGGCACATGAAGATTCACATGTTAAG
. : . : . : . : . : . :
rJMSF020L17+ TTGGAGACAGTTGAAGCAATTTGTACGGAACCAGGATGCTTGAAATATTTCACAAATCAA
rJMSF024C04+ TTGGAGACAGTTGAAGCAATTTGTACGGAACCAGGATGCCTGAAATATTTCACAAATCAA
____________________________________________________________
consensus TTGGAGACAGTTGAAGCAATTTGTACGGAACCAGGATGCTTGAAATATTTCACAAATCAA
. : . : . : . : . : . :
rJMSF020L17+ CAATGCCTTAAGGAACATATTCAGTCTTGCCACCAACATATTGTCTGTGAGATCTGTGGG
rJMSF024C04+ CAATGCCTTAAGGAACATATTCAGTCTTGCCACCAACATATTGTCTGTGAGATCTGTGGG
____________________________________________________________
consensus CAATGCCTTAAGGAACATATTCAGTCTTGCCACCAACATATTGTCTGTGAGATCTGTGGG
. : . : . : . : . : . :
rJMSF020L17+ ACAAAGCAACTGAAGAAGAATATGAAGCGTCATCTTCGCATGCATGAAGCTCAGCCTTCG
rJMSF024C04+ ACAAAGCAACTGAAGAAGAATATGAAGCGTCATCTTCGCATGCATGAAGCTCAGCCTTCG
____________________________________________________________
consensus ACAAAGCAACTGAAGAAGAATATGAAGCGTCATCTTCGCATGCATGAAGCTCAGCCTTCG
. : . : . : . : . : . :
rJMSF020L17+ TCAGAGAGAATCAAGTGTGATTTCGAGGGTTGTGAGCACACATTTGCAACAAGATCAAAT
rJMSF024C04+ TCAGAGAGAGTCAAGTGTGATTTCGAGGGTTGTGAGCACACATTGGCAACAAGATCAAAT
____________________________________________________________
consensus TCAGAGAGAGTCAAGTGTGATTTCGAGGGTTGTGAGCACACATTTGCAACAAGATCAAAT
. : . : . : . : . : . :
rJMSF020L17+ CTAAATCAGCATGTGAAGGCTTTTCACCTTGAGCTTAAGCCATTTGCCTGCAGCATATCT
rJMSF024C04+ CTAAATCAGCATGTGAAGGCTTTTCACCTTGAGCTTAAGCCATTTGCCTGCAGCATATCT
____________________________________________________________
consensus CTAAATCAGCATGTGAAGGCTTTTCACCTTGAGCTTAAGCCATTTGCCTGCAGCATATCT
. : . : . : . : . : . :
rJMSF020L17+ GGTTGTGGCATGAGATTTTCCTTCAAGCATGTGAGAGATAACCATGAAAAGTCTGGATGC
rJMSF024C04+ GGTTGTGGCATGAGATTTTCCTTCAAGCATGTGAGAGATAACCATGAAAAGTCTGGATGC
____________________________________________________________
consensus GGTTGTGGCATGAGATTTTCCTTCAAGCATGTGAGAGATAACCATGAAAAGTCTGGATGC
. : . : . : . : . : . :
rJMSF020L17+ CACTTGTACACACAGGGAGATTTTGAAGAGTCCGATGAACAATTCCGGTCAAGAGAGAGA
rJMSF024C04+ CACTTGTACACACAGGGAGATTTTGAAGAGTCCGATGAACAATTCCGGTCAAGAGAGAGA
rJMSF004O24+ TTGTACACACAGGGAGATTTTGAAGAGTCCGATGAACAATTCCGGTCAAGAGAGAGA
____________________________________________________________
consensus CACTTGTACACACAGGGAGATTTTGAAGAGTCCGATGAACAATTCCGGTCAAGAGAGAGA
. : . : . : . : . : . :
rJMSF020L17+ GGTGGTCGGAAAAGGAAGCTCCCTGTTTTTGAGACTTTGATGAGAAAAAGAATCTTGCCA
rJMSF024C04+ GGTGGTCGGAAAAGGAAGCTCCCTGTTTTTGAGACTTTGATGAGAAAAAGAATCTTGCCA
rJMSF004O24+ GGTGGTCGGAAAAGGAAGCTCCCTGTTTTTGAGACTTTGATGAGAAAAAGAATCTTGCCA
____________________________________________________________
consensus GGTGGTCGGAAAAGGAAGCTCCCTGTTTTTGAGACTTTGATGAGAAAAAGAATCTTGCCA
. : . : . : . : . : . :
rJMSF020L17+ CCGAGGGATACTGATCCTATTATTGAACAAGGTGCAGATTACCTGTCATGGATGCTTTCT
rJMSF024C04+ CCGAGGGATACTGATCCTATTATTGAACAAGGTGCAGATTACCTGTCATGGATGCTTTCT
rJMSF004O24+ CCGAGGGATACTGATCCTATTATTGAACAAGGTGCAGATTACCTGTCATGGATGCTTTCT
____________________________________________________________
consensus CCGAGGGATACTGATCCTATTATTGAACAAGGTGCAGATTACCTGTCATGGATGCTTTCT
. : . : . : . : . : . :
rJMSF020L17+ GCTGGATCTGAGGATGAATCTTGAGTTATTATTGCTAGCTGATTTATATACTTAAATGTA
rJMSF024C04+ GCTGGATCTGAGGATGAATCTTGAGTTATTATTGCTAGCTGATTTATATACTTAAATGTA
rJMSF004O24+ GCTGGATCTGAGGATGAATCTTGAGTTATTATTGCTAGCTGATTTATATACTTAAATGTA
____________________________________________________________
consensus GCTGGATCTGAGGATGAATCTTGAGTTATTATTGCTAGCTGATTTATATACTTAAATGTA
. : . : . : . : . : . :
rJMSF020L17+ TTTGTGTGTATAGTTCTTTGCAAATTGCAATCCAAGGGTAACTCTTAAATTACTATTGGC
rJMSF024C04+ TTTGTGTGTATAGTTCTTTGCAAATTGCAATCCAAGGGTAACTCTTAAATTACTATTGGC
rJMSF004O24+ TTTGTGTGTATAGTTCTTTGCAAATTGCAATCCAAGGGTAACTCTTAAATTACTATTGGC
____________________________________________________________
consensus TTTGTGTGTATAGTTCTTTGCAAATTGCAATCCAAGGGTAACTCTTAAATTACTATTGGC
. : . : . : . : . : . :
rJMSF020L17+ CTGTGTGTAGCTGTATTTAT
rJMSF024C04+ CTGTGTGTAGCTGTATTTATTGTCCAAAAGTTGTACTACATAGATGTATATTAAATGAAT
rJMSF004O24+ CTGTGTGTAGCTGTATTTATTGTCCAAAAGTTGTACTACATAGATGTATATTAAATGAAT
____________________________________________________________
consensus CTGTGTGTAGCTGTATTTATTGTCCAAAAGTTGTACTACATAGATGTATATTAAATGAAT
. : . : . : . : . : . :
rJMSF024C04+ TTTTGCA-CTGGAAATTCGCTAGTATGAAATCATACTCTCGAGT
rJMSF004O24+ TTTTGCACCTGGAAATTCGCTAGTATGAAATCATACTCTCGAGTGTTCTTGTATGAAATA
____________________________________________________________
consensus TTTTGCACCTGGAAATTCGCTAGTATGAAATCATACTCTCGAGTGTTCTTGTATGAAATA