Contig 001270:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF014C16+                                                                     G
                      ____________________________________________________________
consensus                                                                        G
 
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rJMSF046L24+                                                             CTCAGCAGT
rJMSF014C16+          GATCCAACACCCGGACATATTCGAAGACTGGTCCCCCCGCCCATTCTGGTACTCAGCAGT
rJMSF003A14+                                                             CTCAGCAGT
                      ____________________________________________________________
consensus             GATCCAACACCCGGACATATTCGAAGACTGGTCCCCCCGCCCATTCTGGTACTCAGCAGT
 
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rJMSF046L24+          CTGGACAACAGAGTTTTTCATCGAGTGGAGGCAGTAGTACGGGTCATGGACATGGAGGTG
rJMSF014C16+          CTGGACAACAGAGTTTTTCATCGAGTGGAGGCAGTAGTACGGGTCATGGACATGGAGGTG
rJMSF003A14+          CNGGACAACAGAGTTTTTCATCGAGTGGAGGCAGTAGTACGGGTCATGGACATGGAGGTG
                      ____________________________________________________________
consensus             CTGGACAACAGAGTTTTTCATCGAGTGGAGGCAGTAGTACGGGTCATGGACATGGAGGTG
 
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rJMSF046L24+          AGGTTTCCACATCAAGCTAAAAAGATTAAGTGGTCATGTTTTTTCATCGCTCAACGACCA
rJMSF014C16+          AGGTTTCCACATCAAGCTAAAAAGATTAAGTGGTCATGTTTTTTCATCGCTCAACGACCA
rJMSF003A14+          AGGTTTCCACATCAAGCTAAAAAGATTAAGTGGTCATGTTTTTTCATCGCTCAACGACCA
                      ____________________________________________________________
consensus             AGGTTTCCACATCAAGCTAAAAAGATTAAGTGGTCATGTTTTTTCATCGCTCAACGACCA
 
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rJMSF046L24+          TGACCATGGAGTAGCGTTATTATATTTTTGGTGCTAGTCGTCTACCTTTAGGAACCTTGT
rJMSF014C16+          TGACCATGGAGTAGCGTTATTATATTTTTGGTGCTAGTCGTCTACCTTTAGGAACCTTGT
rJMSF003A14+          TGACCATGGAGTAGCGTTATTATATTTTTGGTGCTAGTCGTCTACCTTTAGGAACCTTGT
                      ____________________________________________________________
consensus             TGACCATGGAGTAGCGTTATTATATTTTTGGTGCTAGTCGTCTACCTTTAGGAACCTTGT
 
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rJMSF046L24+          CTTGGTCATCCACAGTTTTCATCCCCTCAGACGTAGCACACCCCGTAGCTCTGTTCATCA
rJMSF014C16+          CTTGGTCATCCACAGTTTTCATCCCCTCAGACGTAGCACACCCCGTAGCTCTGTTCATCA
rJMSF003A14+          CTTGGTCATCCACAGTTTTCATCCCCTCAGACGTAGCACACCCCGTAGCTCTGTTCATCA
                      ____________________________________________________________
consensus             CTTGGTCATCCACAGTTTTCATCCCCTCAGACGTAGCACACCCCGTAGCTCTGTTCATCA
 
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rJMSF046L24+          TCTCTATGTTCATAGAACCTCATTACATGGCAACCCCGTTTTCCATTTTGAATAAGTAAA
rJMSF014C16+          TCTCTATGTTCATAGAACCTCATTACATGGCAACCCCGTTTTCCATTTTGAATAAGTAAA
rJMSF003A14+          TCTCTATGTTCATAGAACCTCATTACATGGCAACCCCGTTTTCCATTTTGAATAAGTAAA
                      ____________________________________________________________
consensus             TCTCTATGTTCATAGAACCTCATTACATGGCAACCCCGTTTTCCATTTTGAATAAGTAAA
 
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rJMSF046L24+          ATATCCATTCTTCAAAGATCCCACAATCCTCGGTATAGACGTGTAGCTAGCTTCTGAATA
rJMSF014C16+          ATATCCATTCTTCAAAGATCCCACAATCCTCGGTATAGACGTGTAGCTAGCTTCTGAATA
rJMSF003A14+          ATATCCATTCTTCAAAGATCCCACAATCCTCGGTATAGACGTGTAGCTAGCTTCTGAATA
                      ____________________________________________________________
consensus             ATATCCATTCTTCAAAGATCCCACAATCCTCGGTATAGACGTGTAGCTAGCTTCTGAATA
 
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rJMSF046L24+          ACAAGAAACAAACCCGCCTTCTGAACTAGGAGAATTTGCACCCATGCTCAATTTTTGGAG
rJMSF014C16+          ACAAGAAACAAACCCGCCTTCTGAACTAGGAGAATTTGCACCCATGCTCAATTTTTGGAG
rJMSF003A14+          ACAAGAAACAAACCCGCCTTCTGAACTAGGAGAATTTGCACCCATGCTCAATTTTTGGAG
                      ____________________________________________________________
consensus             ACAAGAAACAAACCCGCCTTCTGAACTAGGAGAATTTGCACCCATGCTCAATTTTTGGAG
 
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rJMSF046L24+          CTTCTTGTTTATTTATGTTGTAGTCTTCTTTTTGGAACAAAAACCTTGTGGTCTCAACTC
rJMSF014C16+          CTTCTTGTTTATTTATGTTGTAGTCTTCTTTTTGGAACAAAAACCTTGTGGTCTCAACTC
rJMSF003A14+          CTTCTTGTTTATTTATGTTGTAGTCTTCTTTTTGGAACAAAAACCTTGTGGTCTCAACTC
                      ____________________________________________________________
consensus             CTTCTTGTTTATTTATGTTGTAGTCTTCTTTTTGGAACAAAAACCTTGTGGTCTCAACTC
 
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rJMSF046L24+          AAGACAAGATTCAAGATTCAAGATTCATGCCTCCGGTTTAATCCATCTCGCCATTCAGAA
rJMSF014C16+          AAGACAAGATTCAAGATTCAAGATTCATGCCTCCGGTTTAATCCATCTCGCCATTCAGAA
rJMSF003A14+          AAGACAAGATTCAAGATTCAAGATTCATGCCTCCGGTTTAATCCATCTCGCCATTCAGAA
                      ____________________________________________________________
consensus             AAGACAAGATTCAAGATTCAAGATTCATGCCTCCGGTTTAATCCATCTCGCCATTCAGAA
 
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rJMSF046L24+          CGGGCTTCCAATTTGACTGAGTGAGTTTCAAGTTCTCCTTGTTCTTCCACCCTTTTTGTC
rJMSF014C16+          CGGGCTTCCAATTTGACTGAGTGAGTTTCAAGTTCTCCTTGTTCTTCCACCCTTTTTGTC
rJMSF003A14+          CGGGCTTCCAATTTGACTGAGTGAGTTTCAAGTTCTCCTTGTTCTTCCACCCTTTTTGTC
                      ____________________________________________________________
consensus             CGGGCTTCCAATTTGACTGAGTGAGTTTCAAGTTCTCCTTGTTCTTCCACCCTTTTTGTC
 
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rJMSF046L24+          TGGGGCTTTGTTGTGCAAAAAAACAAAAAGAATGATTCTGAGAACTACAAGCAAGGCAAT
rJMSF014C16+          TGGGGCTTTGTTGTGCAAAAAAACAAAAAGAATGATTCTGAGAACTACAAGCAAGGCAAT
rJMSF003A14+          TGGGGCTTTGTTGTGCAAAAAAACAAAAAGAATGATTCTGAGAACTACAAGCAAGGCAAT
                      ____________________________________________________________
consensus             TGGGGCTTTGTTGTGCAAAAAAACAAAAAGAATGATTCTGAGAACTACAAGCAAGGCAAT
 
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rJMSF046L24+          GTAATGCTGCCTTCTTTAT                                         
rJMSF014C16+          GTAATGCTGCCTTCTTTA-TGGACAAGATCTATACTTGTGT                   
rJMSF003A14+          GTAATGCTGCCTTCTTTATTGGACAAGATCTATACTTGTGTTGTGTTGTGATATATAATT
                      ____________________________________________________________
consensus             GTAATGCTGCCTTCTTTATTGGACAAGATCTATACTTGTGTTGTGTTGTGATATATAATT